Wall clock time and date at job start Mon Mar 23 2020 11:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37429 * 122.44678 * 2 1 4 4 C 1.36712 * 113.29279 * 179.97438 * 3 2 1 5 5 C 1.46533 * 125.45628 * 180.02562 * 4 3 2 6 6 O 1.21707 * 120.00295 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99916 * 180.02562 * 5 4 3 8 8 C 1.39628 * 120.00482 * 174.72320 * 7 5 4 9 9 C 1.39057 * 119.92485 * 326.31803 * 8 7 5 10 10 C 1.37768 * 120.07032 * 179.76384 * 9 8 7 11 11 C 1.39647 * 119.92786 * 0.51244 * 10 9 8 12 12 C 1.47750 * 120.07166 * 179.76637 * 11 10 9 13 13 N 1.31283 * 126.38755 * 179.97438 * 12 11 10 14 14 N 1.28669 * 109.25012 * 179.97438 * 13 12 11 15 15 C 1.30344 * 109.53632 * 0.02562 * 14 13 12 16 16 O 1.34458 * 107.64030 * 359.75837 * 15 14 13 17 17 C 1.39652 * 119.86156 * 359.74044 * 11 10 9 18 18 C 1.37768 * 119.92341 * 0.02562 * 17 11 10 19 19 S 1.75826 * 109.08074 * 359.97438 * 4 3 2 20 20 C 1.33860 * 122.44717 * 179.70643 * 2 1 3 21 21 C 1.50701 * 124.51966 * 0.02698 * 20 2 1 22 22 O 1.42890 * 109.47199 * 29.99561 * 21 20 2 23 23 Si 1.86299 * 109.46888 * 149.99912 * 21 20 2 24 24 H 1.48495 * 109.47276 * 59.99920 * 23 21 20 25 25 H 1.48505 * 109.46730 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47133 * 299.99614 * 23 21 20 27 27 H 1.08999 * 109.47040 * 90.02387 * 1 2 3 28 28 H 1.09001 * 109.47384 * 330.02823 * 1 2 3 29 29 H 1.09003 * 109.46857 * 210.02613 * 1 2 3 30 30 H 1.07996 * 123.35442 * 0.02562 * 3 2 1 31 31 H 0.97002 * 119.99904 * 354.71599 * 7 5 4 32 32 H 1.08007 * 119.96847 * 0.02562 * 9 8 7 33 33 H 1.08006 * 120.03779 * 180.27760 * 10 9 8 34 34 H 1.08000 * 126.18182 * 180.02562 * 15 14 13 35 35 H 1.07996 * 120.03645 * 180.02562 * 17 11 10 36 36 H 1.08004 * 119.96225 * 180.02562 * 18 17 11 37 37 H 1.08995 * 109.46485 * 269.99726 * 21 20 2 38 38 H 0.96701 * 114.00029 * 59.99894 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9423 0.0006 5 6 4.6231 1.9854 0.0012 6 8 4.3002 3.1589 0.0009 7 7 5.9273 1.6454 0.0012 8 6 6.9067 2.6345 -0.1093 9 6 6.6634 3.7690 -0.8757 10 6 7.6258 4.7490 -0.9829 11 6 8.8507 4.5970 -0.3297 12 6 9.8870 5.6436 -0.4467 13 7 11.0750 5.6292 0.1118 14 7 11.7074 6.7030 -0.2085 15 6 10.9548 7.4394 -0.9768 16 8 9.7908 6.7892 -1.1509 17 6 9.0939 3.4540 0.4349 18 6 8.1255 2.4800 0.5420 19 16 3.8971 -0.7897 0.0018 20 6 2.2252 -1.1296 0.0058 21 6 1.6355 -2.5165 0.0123 22 8 0.3757 -2.5016 -0.6618 23 14 2.7928 -3.6873 -0.8598 24 1 4.1020 -3.7027 -0.1592 25 1 2.2120 -5.0541 -0.8528 26 1 2.9869 -3.2386 -2.2620 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 0.8902 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.8016 2.1448 0.0004 31 1 6.1856 0.7136 0.0781 32 1 5.7174 3.8841 -1.3840 33 1 7.4346 5.6321 -1.5746 34 1 11.2200 8.3966 -1.4009 35 1 10.0400 3.3338 0.9416 36 1 8.3127 1.5959 1.1335 37 1 1.4931 -2.8457 1.0415 38 1 0.4268 -2.2176 -1.5847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001540976789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:10 Heat of formation + Delta-G solvation = 33.115150 kcal Electronic energy + Delta-G solvation = -25812.427522 eV Core-core repulsion = 21829.351960 eV Total energy + Delta-G solvation = -3983.075562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.09134 -41.81870 -40.30681 -39.54527 -37.50720 -37.13723 -36.25471 -33.29535 -32.25689 -32.22466 -30.38952 -30.11772 -26.97586 -25.36669 -25.09307 -24.40999 -23.63821 -22.79665 -21.72485 -20.42307 -19.64524 -19.20275 -18.80787 -18.22536 -17.74341 -17.49186 -17.42681 -16.83065 -16.59086 -16.33513 -16.19259 -15.77648 -15.45901 -15.24316 -14.97715 -14.72628 -14.52376 -14.22917 -14.14907 -13.79202 -13.59400 -13.39633 -13.24199 -13.10918 -12.86539 -12.65566 -12.58247 -12.43200 -12.27023 -12.04164 -11.96313 -11.87285 -11.30635 -10.85188 -10.82132 -10.17404 -9.86294 -9.59352 -9.18240 -0.89226 -0.57575 0.09692 0.22028 0.51943 0.58441 0.84584 1.14783 1.20271 1.27477 1.29041 1.48816 1.66187 1.70830 1.93691 2.63021 2.86559 3.11486 3.34777 3.45012 3.49067 3.72747 3.79260 3.96936 4.03241 4.08066 4.14230 4.26361 4.28601 4.32993 4.43926 4.47653 4.58329 4.66586 4.73950 4.83932 4.91293 4.96476 5.06376 5.19155 5.25286 5.26847 5.35882 5.69196 5.99705 6.24784 6.74755 7.28792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.093 4.093 3 C -0.036 4.036 4 C -0.270 4.270 5 C 0.596 3.404 6 O -0.500 6.500 7 N -0.672 5.672 8 C 0.178 3.822 9 C -0.123 4.123 10 C -0.058 4.058 11 C -0.047 4.047 12 C 0.217 3.783 13 N -0.280 5.280 14 N -0.287 5.287 15 C 0.146 3.854 16 O -0.224 6.224 17 C -0.041 4.041 18 C -0.146 4.146 19 S 0.189 5.811 20 C -0.230 4.230 21 C -0.041 4.041 22 O -0.527 6.527 23 Si 0.904 3.096 24 H -0.232 1.232 25 H -0.228 1.228 26 H -0.239 1.239 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.412 0.588 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.265 0.735 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -3.955 -2.263 5.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.069 4.069 4 C -0.390 4.390 5 C 0.384 3.616 6 O -0.376 6.376 7 N -0.316 5.316 8 C 0.082 3.918 9 C -0.143 4.143 10 C -0.078 4.078 11 C -0.049 4.049 12 C 0.010 3.990 13 N -0.127 5.127 14 N -0.133 5.133 15 C -0.084 4.084 16 O -0.103 6.103 17 C -0.061 4.061 18 C -0.166 4.166 19 S 0.458 5.542 20 C -0.349 4.349 21 C -0.153 4.153 22 O -0.333 6.333 23 Si 0.723 3.277 24 H -0.155 1.155 25 H -0.150 1.150 26 H -0.161 1.161 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.176 0.824 31 H 0.249 0.751 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.281 0.719 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.298 -5.212 -1.433 5.414 hybrid contribution -2.087 1.588 -0.933 2.783 sum -2.385 -3.625 -2.366 4.942 Atomic orbital electron populations 1.20665 0.88248 1.03659 1.02947 1.18730 0.98652 0.90330 1.02797 1.20776 0.90661 1.00376 0.95123 1.24317 0.97713 0.96765 1.20199 1.17005 0.81074 0.87787 0.75699 1.90893 1.81213 1.17983 1.47488 1.43368 1.04995 1.10090 1.73177 1.17885 0.88654 0.90187 0.95057 1.21071 1.00648 0.93509 0.99080 1.21130 0.90953 0.98866 0.96869 1.17200 0.91137 0.92090 1.04516 1.25554 0.95329 0.86300 0.91832 1.74781 1.02489 1.14797 1.20670 1.74391 1.26461 0.99824 1.12621 1.29789 0.79343 1.00922 0.98331 1.84904 1.39037 1.28949 1.57360 1.20974 0.99524 0.90505 0.95095 1.20850 0.93005 1.01265 1.01486 1.83025 1.03654 0.98208 1.69362 1.24550 0.98139 1.01257 1.10979 1.24429 0.92433 0.94824 1.03626 1.86551 1.27585 1.90171 1.28947 0.86224 0.78720 0.81275 0.81523 1.15494 1.15005 1.16145 0.90930 0.91772 0.89363 0.82449 0.75129 0.83658 0.84400 0.71935 0.83528 0.84148 0.85283 0.77304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.18 8.69 36.00 0.31 0.50 16 2 C -0.09 0.08 5.75 -106.46 -0.61 -0.53 16 3 C -0.04 0.00 9.80 -40.43 -0.40 -0.40 16 4 C -0.27 -0.03 6.45 -36.79 -0.24 -0.27 16 5 C 0.60 0.87 7.51 -12.92 -0.10 0.77 16 6 O -0.50 -2.25 14.53 5.18 0.08 -2.18 16 7 N -0.67 0.41 5.32 -11.06 -0.06 0.36 16 8 C 0.18 0.07 6.27 -83.70 -0.53 -0.45 16 9 C -0.12 -0.16 8.63 -39.45 -0.34 -0.50 16 10 C -0.06 -0.05 9.72 -39.23 -0.38 -0.43 16 11 C -0.05 -0.08 5.87 -104.96 -0.62 -0.69 16 12 C 0.22 0.68 7.98 -13.90 -0.11 0.57 16 13 N -0.28 -1.38 11.91 32.06 0.38 -1.00 16 14 N -0.29 -1.22 12.22 29.46 0.36 -0.86 16 15 C 0.15 0.05 13.36 52.13 0.70 0.75 16 16 O -0.22 -0.41 10.67 3.86 0.04 -0.37 16 17 C -0.04 -0.02 9.69 -39.23 -0.38 -0.40 16 18 C -0.15 0.11 9.94 -39.45 -0.39 -0.28 16 19 S 0.19 -0.35 19.80 -107.50 -2.13 -2.48 16 20 C -0.23 0.35 5.54 -35.85 -0.20 0.15 16 21 C -0.04 0.11 2.76 36.01 0.10 0.21 16 22 O -0.53 1.29 9.85 -35.23 -0.35 0.94 16 23 Si 0.90 -2.31 26.59 -169.99 -4.52 -6.83 16 24 H -0.23 0.58 7.10 56.52 0.40 0.98 16 25 H -0.23 0.30 7.11 56.52 0.40 0.71 16 26 H -0.24 0.45 7.11 56.52 0.40 0.85 16 27 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 28 H 0.06 -0.13 8.13 -51.93 -0.42 -0.55 16 29 H 0.09 -0.12 6.40 -51.93 -0.33 -0.45 16 30 H 0.16 -0.03 8.06 -52.49 -0.42 -0.45 16 31 H 0.41 -1.35 7.94 -40.82 -0.32 -1.67 16 32 H 0.15 0.26 6.42 -52.48 -0.34 -0.08 16 33 H 0.14 -0.05 7.93 -52.48 -0.42 -0.47 16 34 H 0.27 -1.40 8.06 -52.49 -0.42 -1.82 16 35 H 0.15 -0.03 7.86 -52.49 -0.41 -0.44 16 36 H 0.14 -0.47 8.06 -52.48 -0.42 -0.89 16 37 H 0.13 -0.46 7.96 -51.93 -0.41 -0.87 16 38 H 0.38 -1.95 8.66 45.56 0.39 -1.56 16 LS Contribution 343.76 15.07 5.18 5.18 Total: 0.00 -8.62 343.76 -6.94 -15.57 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -2.75 Total: -7.33 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.18 Total: -1.01 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: 0.68 Total: -1.50 kcal Atomic # 8 Polarization: -1.37 SS G_CDS: -0.23 Total: -1.60 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: -4.52 Total: -6.83 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.13 Total: -2.48 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -8.62 -6.94 -15.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540976789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.684 kcal (2) G-P(sol) polarization free energy of solvation -8.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds