Wall clock time and date at job start Mon Mar 23 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37429 * 122.44678 * 2 1 4 4 C 1.36712 * 113.29279 * 179.97438 * 3 2 1 5 5 C 1.46533 * 125.45628 * 180.02562 * 4 3 2 6 6 O 1.21707 * 120.00295 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99916 * 180.02562 * 5 4 3 8 8 C 1.39628 * 120.00482 * 174.72320 * 7 5 4 9 9 C 1.39057 * 119.92485 * 326.31803 * 8 7 5 10 10 C 1.37768 * 120.07032 * 179.76384 * 9 8 7 11 11 C 1.39647 * 119.92786 * 0.51244 * 10 9 8 12 12 C 1.47750 * 120.07166 * 179.76637 * 11 10 9 13 13 N 1.31283 * 126.38755 * 179.97438 * 12 11 10 14 14 N 1.28669 * 109.25012 * 179.97438 * 13 12 11 15 15 C 1.30344 * 109.53632 * 0.02562 * 14 13 12 16 16 O 1.34458 * 107.64030 * 359.75837 * 15 14 13 17 17 C 1.39652 * 119.86156 * 359.74044 * 11 10 9 18 18 C 1.37768 * 119.92341 * 0.02562 * 17 11 10 19 19 S 1.75826 * 109.08074 * 359.97438 * 4 3 2 20 20 C 1.33860 * 122.44717 * 179.70643 * 2 1 3 21 21 C 1.50701 * 124.51966 * 0.02698 * 20 2 1 22 22 O 1.42890 * 109.47199 * 29.99561 * 21 20 2 23 23 Si 1.86299 * 109.46888 * 149.99912 * 21 20 2 24 24 H 1.48495 * 109.47276 * 59.99920 * 23 21 20 25 25 H 1.48505 * 109.46730 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47133 * 299.99614 * 23 21 20 27 27 H 1.08999 * 109.47040 * 90.02387 * 1 2 3 28 28 H 1.09001 * 109.47384 * 330.02823 * 1 2 3 29 29 H 1.09003 * 109.46857 * 210.02613 * 1 2 3 30 30 H 1.07996 * 123.35442 * 0.02562 * 3 2 1 31 31 H 0.97002 * 119.99904 * 354.71599 * 7 5 4 32 32 H 1.08007 * 119.96847 * 0.02562 * 9 8 7 33 33 H 1.08006 * 120.03779 * 180.27760 * 10 9 8 34 34 H 1.08000 * 126.18182 * 180.02562 * 15 14 13 35 35 H 1.07996 * 120.03645 * 180.02562 * 17 11 10 36 36 H 1.08004 * 119.96225 * 180.02562 * 18 17 11 37 37 H 1.08995 * 109.46485 * 269.99726 * 21 20 2 38 38 H 0.96701 * 114.00029 * 59.99894 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9423 0.0006 5 6 4.6231 1.9854 0.0012 6 8 4.3002 3.1589 0.0009 7 7 5.9273 1.6454 0.0012 8 6 6.9067 2.6345 -0.1093 9 6 6.6634 3.7690 -0.8757 10 6 7.6258 4.7490 -0.9829 11 6 8.8507 4.5970 -0.3297 12 6 9.8870 5.6436 -0.4467 13 7 11.0750 5.6292 0.1118 14 7 11.7074 6.7030 -0.2085 15 6 10.9548 7.4394 -0.9768 16 8 9.7908 6.7892 -1.1509 17 6 9.0939 3.4540 0.4349 18 6 8.1255 2.4800 0.5420 19 16 3.8971 -0.7897 0.0018 20 6 2.2252 -1.1296 0.0058 21 6 1.6355 -2.5165 0.0123 22 8 0.3757 -2.5016 -0.6618 23 14 2.7928 -3.6873 -0.8598 24 1 4.1020 -3.7027 -0.1592 25 1 2.2120 -5.0541 -0.8528 26 1 2.9869 -3.2386 -2.2620 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 0.8902 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.8016 2.1448 0.0004 31 1 6.1856 0.7136 0.0781 32 1 5.7174 3.8841 -1.3840 33 1 7.4346 5.6321 -1.5746 34 1 11.2200 8.3966 -1.4009 35 1 10.0400 3.3338 0.9416 36 1 8.3127 1.5959 1.1335 37 1 1.4931 -2.8457 1.0415 38 1 0.4268 -2.2176 -1.5847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001540976789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:09 Heat of formation + Delta-G solvation = 30.136657 kcal Electronic energy + Delta-G solvation = -25812.556679 eV Core-core repulsion = 21829.351960 eV Total energy + Delta-G solvation = -3983.204719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.22706 -41.86952 -40.23405 -39.55113 -37.34123 -37.29402 -36.33646 -33.37347 -32.26790 -32.18942 -30.27353 -30.13852 -26.95490 -25.34177 -25.17651 -24.38474 -23.69070 -22.83727 -21.75371 -20.32331 -19.58985 -19.25365 -18.80783 -18.37696 -17.64575 -17.44836 -17.40962 -16.86531 -16.47282 -16.30167 -16.20102 -15.73583 -15.49250 -15.22263 -14.86460 -14.64797 -14.48550 -14.19858 -14.09197 -13.81283 -13.58222 -13.47800 -13.13231 -13.04840 -12.98068 -12.62017 -12.49043 -12.30134 -12.17190 -12.13850 -11.98715 -11.76651 -11.41300 -10.93487 -10.67215 -10.19344 -9.76658 -9.47754 -9.22957 -0.88973 -0.60785 0.18719 0.21112 0.52432 0.61984 0.99603 1.21590 1.24038 1.36355 1.39809 1.45790 1.66578 1.87940 1.92145 2.59160 2.81849 3.35117 3.40355 3.50156 3.64799 3.75552 3.76742 3.96327 4.05760 4.06684 4.15705 4.25772 4.30342 4.37160 4.53937 4.60050 4.64822 4.75408 4.83823 4.92082 4.92803 5.00852 5.05551 5.17151 5.21313 5.37914 5.49657 5.66769 6.03935 6.60644 6.72548 7.14311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.102 4.102 3 C -0.044 4.044 4 C -0.289 4.289 5 C 0.595 3.405 6 O -0.539 6.539 7 N -0.660 5.660 8 C 0.171 3.829 9 C -0.134 4.134 10 C -0.059 4.059 11 C -0.060 4.060 12 C 0.213 3.787 13 N -0.310 5.310 14 N -0.334 5.334 15 C 0.170 3.830 16 O -0.228 6.228 17 C -0.044 4.044 18 C -0.135 4.135 19 S 0.227 5.773 20 C -0.229 4.229 21 C -0.037 4.037 22 O -0.536 6.536 23 Si 0.926 3.074 24 H -0.228 1.228 25 H -0.246 1.246 26 H -0.248 1.248 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.152 0.848 31 H 0.425 0.575 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.315 0.685 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.140 0.860 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -4.785 -2.332 5.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.078 4.078 4 C -0.409 4.409 5 C 0.385 3.615 6 O -0.417 6.417 7 N -0.305 5.305 8 C 0.075 3.925 9 C -0.154 4.154 10 C -0.079 4.079 11 C -0.063 4.063 12 C 0.004 3.996 13 N -0.157 5.157 14 N -0.178 5.178 15 C -0.060 4.060 16 O -0.107 6.107 17 C -0.064 4.064 18 C -0.155 4.155 19 S 0.496 5.504 20 C -0.349 4.349 21 C -0.150 4.150 22 O -0.344 6.344 23 Si 0.746 3.254 24 H -0.151 1.151 25 H -0.169 1.169 26 H -0.171 1.171 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.169 0.831 31 H 0.265 0.735 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.329 0.671 35 H 0.169 0.831 36 H 0.188 0.812 37 H 0.158 0.842 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.238 -6.070 -1.499 6.257 hybrid contribution -2.114 1.826 -0.955 2.953 sum -2.353 -4.243 -2.454 5.437 Atomic orbital electron populations 1.20649 0.87662 1.03408 1.03458 1.18786 0.99144 0.90146 1.03373 1.20858 0.90963 1.00625 0.95355 1.24278 0.97426 0.97858 1.21290 1.17221 0.81741 0.87555 0.75004 1.90869 1.81848 1.19537 1.49454 1.43260 1.04250 1.10677 1.72331 1.18027 0.89230 0.90183 0.95056 1.21075 1.00367 0.94243 0.99733 1.21179 0.90678 0.99115 0.96904 1.17351 0.91144 0.92426 1.05373 1.25779 0.95212 0.86828 0.91748 1.74697 1.03363 1.15738 1.21918 1.74308 1.27908 1.00667 1.14956 1.30879 0.77921 1.01230 0.95962 1.84928 1.39683 1.28778 1.57325 1.21128 1.00012 0.90408 0.94854 1.21095 0.91855 1.01747 1.00777 1.82826 1.03082 0.96079 1.68370 1.24806 0.98503 1.01686 1.09888 1.24489 0.92349 0.93870 1.04297 1.86529 1.27676 1.90170 1.29984 0.85918 0.78548 0.80029 0.80895 1.15119 1.16873 1.17066 0.90067 0.91941 0.89618 0.83063 0.73537 0.84627 0.83659 0.67088 0.83095 0.81204 0.84220 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.35 8.69 71.24 0.62 0.97 16 2 C -0.10 0.18 5.75 -21.05 -0.12 0.06 16 3 C -0.04 -0.04 9.80 21.72 0.21 0.17 16 4 C -0.29 -0.19 6.45 24.08 0.16 -0.03 16 5 C 0.60 2.24 7.51 86.41 0.65 2.89 16 6 O -0.54 -5.79 14.53 -4.37 -0.06 -5.86 16 7 N -0.66 0.80 5.32 -307.11 -1.63 -0.83 16 8 C 0.17 0.18 6.27 38.29 0.24 0.42 16 9 C -0.13 -0.50 8.63 22.36 0.19 -0.31 16 10 C -0.06 -0.17 9.72 22.50 0.22 0.04 16 11 C -0.06 -0.26 5.87 -20.08 -0.12 -0.37 16 12 C 0.21 1.53 7.98 87.29 0.70 2.23 16 13 N -0.31 -3.43 11.91 -166.31 -1.98 -5.41 16 14 N -0.33 -3.03 12.22 -175.20 -2.14 -5.17 16 15 C 0.17 0.03 13.36 130.46 1.74 1.77 16 16 O -0.23 -0.87 10.67 -9.11 -0.10 -0.97 16 17 C -0.04 -0.05 9.69 22.50 0.22 0.17 16 18 C -0.13 0.28 9.94 22.35 0.22 0.50 16 19 S 0.23 -1.02 19.80 -56.49 -1.12 -2.13 16 20 C -0.23 0.85 5.54 24.69 0.14 0.99 16 21 C -0.04 0.23 2.76 71.24 0.20 0.43 16 22 O -0.54 3.02 9.85 -148.98 -1.47 1.55 16 23 Si 0.93 -5.44 26.59 68.60 1.82 -3.61 16 24 H -0.23 1.47 7.10 99.48 0.71 2.18 16 25 H -0.25 0.69 7.11 99.48 0.71 1.39 16 26 H -0.25 1.10 7.11 99.48 0.71 1.80 16 27 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.06 -0.22 8.13 -2.39 -0.02 -0.24 16 29 H 0.09 -0.26 6.40 -2.39 -0.02 -0.28 16 30 H 0.15 0.22 8.06 -2.91 -0.02 0.20 16 31 H 0.43 -3.11 7.94 -92.71 -0.74 -3.85 16 32 H 0.14 0.76 6.42 -2.91 -0.02 0.74 16 33 H 0.15 0.07 7.93 -2.91 -0.02 0.04 16 34 H 0.31 -4.01 8.06 -2.91 -0.02 -4.04 16 35 H 0.15 0.01 7.86 -2.91 -0.02 -0.01 16 36 H 0.17 -1.44 8.06 -2.91 -0.02 -1.47 16 37 H 0.14 -1.16 7.96 -2.39 -0.02 -1.18 16 38 H 0.39 -4.29 8.66 -74.06 -0.64 -4.93 16 Total: 0.00 -21.76 343.76 -0.88 -22.64 By element: Atomic # 1 Polarization: -10.65 SS G_CDS: 0.53 Total: -10.12 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.26 Total: 9.92 kcal Atomic # 7 Polarization: -5.66 SS G_CDS: -5.76 Total: -11.42 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -1.63 Total: -5.28 kcal Atomic # 14 Polarization: -5.44 SS G_CDS: 1.82 Total: -3.61 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -1.12 Total: -2.13 kcal Total: -21.76 -0.88 -22.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001540976789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.775 kcal (2) G-P(sol) polarization free energy of solvation -21.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds