Wall clock time and date at job start Mon Mar 23 2020 11:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30347 * 126.17709 * 2 1 4 4 N 1.28668 * 109.53693 * 179.71322 * 3 2 1 5 5 C 1.31284 * 109.24937 * 0.41226 * 4 3 2 6 6 C 1.47744 * 126.38992 * 179.86229 * 5 4 3 7 7 C 1.39652 * 120.06866 * 359.68784 * 6 5 4 8 8 C 1.37762 * 119.93103 * 180.02562 * 7 6 5 9 9 C 1.39061 * 120.06860 * 359.97438 * 8 7 6 10 10 N 1.39634 * 119.92790 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00017 * 146.59486 * 10 9 8 12 12 O 1.21714 * 119.99877 * 354.72373 * 11 10 9 13 13 C 1.46533 * 120.00220 * 174.72313 * 11 10 9 14 14 S 1.75836 * 125.45803 * 0.29414 * 13 11 10 15 15 C 1.70622 * 91.55998 * 180.08459 * 14 13 11 16 16 C 1.50696 * 124.51823 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47051 * 119.69911 * 16 15 14 18 18 Si 1.86296 * 109.47367 * 359.70004 * 16 15 14 19 19 H 1.48507 * 109.47120 * 59.99988 * 18 16 15 20 20 H 1.48498 * 109.47396 * 300.00212 * 18 16 15 21 21 H 1.48508 * 109.47291 * 179.97438 * 18 16 15 22 22 C 1.33852 * 110.95524 * 359.65913 * 15 14 13 23 23 C 1.36711 * 125.46179 * 180.02562 * 13 11 10 24 24 C 1.39060 * 120.14481 * 0.25351 * 9 8 7 25 25 C 1.37773 * 120.06403 * 359.48730 * 24 9 8 26 26 O 1.34450 * 126.18349 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46733 * 270.03975 * 1 2 3 28 28 H 1.08994 * 109.47015 * 30.04410 * 1 2 3 29 29 H 1.09000 * 109.46529 * 150.03889 * 1 2 3 30 30 H 1.07999 * 120.03302 * 0.04033 * 7 6 5 31 31 H 1.08001 * 119.96850 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00094 * 326.59624 * 10 9 8 33 33 H 1.08997 * 109.47232 * 239.69581 * 16 15 14 34 34 H 0.96702 * 114.00240 * 300.00081 * 17 16 15 35 35 H 1.08006 * 122.44540 * 180.24562 * 22 15 14 36 36 H 1.07997 * 123.34964 * 359.97438 * 23 13 11 37 37 H 1.07991 * 119.96940 * 179.74802 * 24 9 8 38 38 H 1.08003 * 120.03042 * 180.27214 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2765 1.0522 0.0000 4 7 3.5093 0.6837 0.0061 5 6 3.5691 -0.6278 0.0013 6 6 4.7971 -1.4492 0.0027 7 6 6.0507 -0.8337 0.0031 8 6 7.1939 -1.6024 0.0038 9 6 7.1005 -2.9899 0.0048 10 7 8.2612 -3.7662 0.0050 11 6 8.2798 -4.9503 0.6483 12 8 7.3188 -5.2992 1.3088 13 6 9.4569 -5.8178 0.5527 14 16 10.9207 -5.4548 -0.3514 15 6 11.6292 -6.9366 0.1106 16 6 13.0036 -7.3927 -0.3064 17 8 13.8136 -7.5875 0.8547 18 14 13.7829 -6.0991 -1.3972 19 1 13.8914 -4.8208 -0.6491 20 1 12.9413 -5.8965 -2.6038 21 1 15.1376 -6.5483 -1.8076 22 6 10.8041 -7.6368 0.8984 23 6 9.5951 -7.0366 1.1563 24 6 5.8539 -3.6059 -0.0004 25 6 4.7068 -2.8427 0.0042 26 8 2.3008 -1.0852 0.0005 27 1 -0.3633 0.0007 1.0277 28 1 -0.3633 0.8895 -0.5145 29 1 -0.3632 -0.8904 -0.5132 30 1 6.1238 0.2438 0.0030 31 1 8.1636 -1.1270 0.0037 32 1 9.0541 -3.4532 -0.4578 33 1 12.9241 -8.3310 -0.8554 34 1 13.9279 -6.7921 1.3925 35 1 11.0689 -8.6032 1.3014 36 1 8.8304 -7.4830 1.7747 37 1 5.7847 -4.6836 -0.0038 38 1 3.7389 -3.3218 0.0046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565816823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:12 Heat of formation + Delta-G solvation = 32.811421 kcal Electronic energy + Delta-G solvation = -25525.182995 eV Core-core repulsion = 21542.094262 eV Total energy + Delta-G solvation = -3983.088732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.05871 -41.81096 -39.99881 -39.28558 -37.50876 -37.10302 -36.27268 -34.04448 -32.32605 -32.22129 -31.25417 -28.86200 -27.72559 -25.49268 -24.50582 -24.31285 -23.47879 -22.99247 -22.11899 -20.84682 -19.70480 -19.01091 -18.58712 -18.36151 -17.77941 -17.39850 -17.20261 -16.69274 -16.66112 -16.43645 -15.90215 -15.72260 -15.31691 -15.28719 -14.90258 -14.56968 -14.49604 -14.24679 -14.08437 -14.04920 -13.80143 -13.73083 -13.56511 -13.33827 -12.85138 -12.80103 -12.61011 -12.55034 -12.39638 -11.95756 -11.91433 -11.82707 -11.29322 -10.81763 -10.64623 -10.16470 -10.04983 -9.83454 -9.14239 -0.91046 -0.56841 0.03793 0.22834 0.43031 0.57719 0.85270 1.11796 1.19293 1.20159 1.27780 1.49682 1.65857 1.68922 1.93601 2.64074 2.77451 3.13343 3.33703 3.37264 3.47181 3.68033 3.77806 3.93827 4.06841 4.09298 4.24327 4.25099 4.26487 4.28434 4.29302 4.31684 4.46504 4.54306 4.78160 4.81740 4.84872 4.90430 4.97780 5.06340 5.14079 5.20131 5.27136 5.69962 5.99373 6.25444 6.74022 7.33708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.165 3.835 3 N -0.285 5.285 4 N -0.276 5.276 5 C 0.212 3.788 6 C -0.043 4.043 7 C -0.042 4.042 8 C -0.145 4.145 9 C 0.176 3.824 10 N -0.671 5.671 11 C 0.595 3.405 12 O -0.500 6.500 13 C -0.267 4.267 14 S 0.184 5.816 15 C -0.223 4.223 16 C -0.043 4.043 17 O -0.529 6.529 18 Si 0.885 3.115 19 H -0.231 1.231 20 H -0.230 1.230 21 H -0.221 1.221 22 C -0.118 4.118 23 C -0.041 4.041 24 C -0.122 4.122 25 C -0.059 4.059 26 O -0.221 6.221 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.412 0.588 33 H 0.131 0.869 34 H 0.379 0.621 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 -2.230 -2.307 3.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.045 4.045 3 N -0.132 5.132 4 N -0.124 5.124 5 C 0.004 3.996 6 C -0.046 4.046 7 C -0.062 4.062 8 C -0.165 4.165 9 C 0.081 3.919 10 N -0.316 5.316 11 C 0.383 3.617 12 O -0.375 6.375 13 C -0.387 4.387 14 S 0.452 5.548 15 C -0.343 4.343 16 C -0.156 4.156 17 O -0.335 6.335 18 Si 0.704 3.296 19 H -0.154 1.154 20 H -0.153 1.153 21 H -0.143 1.143 22 C -0.149 4.149 23 C -0.074 4.074 24 C -0.142 4.142 25 C -0.080 4.080 26 O -0.101 6.101 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.249 0.751 33 H 0.148 0.852 34 H 0.227 0.773 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.970 -0.021 -3.505 4.594 hybrid contribution -0.680 -2.124 1.182 2.524 sum 2.290 -2.145 -2.322 3.904 Atomic orbital electron populations 1.20420 0.79814 1.05986 1.05531 1.28113 0.97880 0.79274 0.99255 1.74414 0.95990 1.25457 1.17378 1.74741 1.12135 1.08177 1.17315 1.25397 0.83487 0.90481 1.00200 1.17196 0.86867 0.91410 1.09128 1.20964 0.89359 1.01025 0.94868 1.20843 0.99517 0.91208 1.04952 1.17878 0.86168 0.90226 0.97676 1.43364 1.14360 1.19999 1.53883 1.17014 0.86072 0.80091 0.78477 1.90898 1.35111 1.72608 1.38906 1.24405 0.99871 1.02247 1.12225 1.83024 1.07032 1.17172 1.47609 1.24673 1.03236 1.00005 1.06350 1.24464 0.86609 1.09988 0.94496 1.86562 1.69616 1.39369 1.37916 0.86369 0.84159 0.78408 0.80676 1.15368 1.15259 1.14252 1.20032 0.92587 1.02440 0.99890 1.20902 0.97639 0.92010 0.96854 1.21064 0.90023 1.01483 1.01639 1.21124 0.99366 0.91511 0.95950 1.84841 1.17100 1.38121 1.70074 0.88031 0.87252 0.88681 0.83542 0.84159 0.75147 0.85153 0.77310 0.82774 0.82308 0.83660 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.15 10.51 36.01 0.38 0.53 16 2 C 0.16 0.42 8.47 -12.90 -0.11 0.31 16 3 N -0.28 -1.56 12.22 32.58 0.40 -1.17 16 4 N -0.28 -1.61 11.91 32.06 0.38 -1.23 16 5 C 0.21 0.86 7.98 -13.90 -0.11 0.75 16 6 C -0.04 -0.10 5.87 -104.96 -0.62 -0.71 16 7 C -0.04 -0.03 9.69 -39.23 -0.38 -0.41 16 8 C -0.14 0.09 9.94 -39.45 -0.39 -0.30 16 9 C 0.18 0.09 6.27 -83.69 -0.52 -0.43 16 10 N -0.67 0.41 5.32 -11.05 -0.06 0.36 16 11 C 0.60 0.82 7.51 -12.92 -0.10 0.72 16 12 O -0.50 -2.23 14.53 5.18 0.08 -2.15 16 13 C -0.27 0.03 6.45 -36.79 -0.24 -0.21 16 14 S 0.18 -0.37 19.21 -107.50 -2.07 -2.44 16 15 C -0.22 0.39 5.58 -35.85 -0.20 0.19 16 16 C -0.04 0.11 2.95 36.00 0.11 0.21 16 17 O -0.53 0.90 12.85 -35.23 -0.45 0.45 16 18 Si 0.89 -2.28 26.15 -169.99 -4.45 -6.72 16 19 H -0.23 0.60 7.11 56.52 0.40 1.00 16 20 H -0.23 0.51 7.11 56.52 0.40 0.91 16 21 H -0.22 0.30 7.11 56.52 0.40 0.70 16 22 C -0.12 0.15 9.95 -41.42 -0.41 -0.26 16 23 C -0.04 0.01 10.01 -40.43 -0.40 -0.39 16 24 C -0.12 -0.18 8.63 -39.45 -0.34 -0.52 16 25 C -0.06 -0.08 9.72 -39.23 -0.38 -0.46 16 26 O -0.22 -0.73 10.67 3.87 0.04 -0.69 16 27 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 28 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 29 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 30 H 0.15 0.02 7.86 -52.49 -0.41 -0.39 16 31 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 32 H 0.41 -1.36 7.94 -40.82 -0.32 -1.69 16 33 H 0.13 -0.45 7.96 -51.93 -0.41 -0.86 16 34 H 0.38 -1.83 8.70 45.56 0.40 -1.43 16 35 H 0.15 -0.34 8.06 -52.48 -0.42 -0.77 16 36 H 0.16 -0.12 8.06 -52.49 -0.42 -0.54 16 37 H 0.15 0.28 6.42 -52.49 -0.34 -0.05 16 38 H 0.14 0.01 7.93 -52.48 -0.42 -0.40 16 LS Contribution 349.12 15.07 5.26 5.26 Total: 0.00 -8.74 349.12 -7.43 -16.16 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: -2.84 Total: -6.83 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.72 Total: -0.99 kcal Atomic # 7 Polarization: -2.76 SS G_CDS: 0.72 Total: -2.04 kcal Atomic # 8 Polarization: -2.06 SS G_CDS: -0.34 Total: -2.40 kcal Atomic # 14 Polarization: -2.28 SS G_CDS: -4.45 Total: -6.72 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.07 Total: -2.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -8.74 -7.43 -16.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565816823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.974 kcal (2) G-P(sol) polarization free energy of solvation -8.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds