Wall clock time and date at job start Mon Mar 23 2020 11:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30347 * 126.17709 * 2 1 4 4 N 1.28668 * 109.53693 * 179.71322 * 3 2 1 5 5 C 1.31284 * 109.24937 * 0.41226 * 4 3 2 6 6 C 1.47744 * 126.38992 * 179.86229 * 5 4 3 7 7 C 1.39652 * 120.06866 * 359.68784 * 6 5 4 8 8 C 1.37762 * 119.93103 * 180.02562 * 7 6 5 9 9 C 1.39061 * 120.06860 * 359.97438 * 8 7 6 10 10 N 1.39634 * 119.92790 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00017 * 146.59486 * 10 9 8 12 12 O 1.21714 * 119.99877 * 354.72373 * 11 10 9 13 13 C 1.46533 * 120.00220 * 174.72313 * 11 10 9 14 14 S 1.75836 * 125.45803 * 0.29414 * 13 11 10 15 15 C 1.70622 * 91.55998 * 180.08459 * 14 13 11 16 16 C 1.50696 * 124.51823 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47051 * 119.69911 * 16 15 14 18 18 Si 1.86296 * 109.47367 * 359.70004 * 16 15 14 19 19 H 1.48507 * 109.47120 * 59.99988 * 18 16 15 20 20 H 1.48498 * 109.47396 * 300.00212 * 18 16 15 21 21 H 1.48508 * 109.47291 * 179.97438 * 18 16 15 22 22 C 1.33852 * 110.95524 * 359.65913 * 15 14 13 23 23 C 1.36711 * 125.46179 * 180.02562 * 13 11 10 24 24 C 1.39060 * 120.14481 * 0.25351 * 9 8 7 25 25 C 1.37773 * 120.06403 * 359.48730 * 24 9 8 26 26 O 1.34450 * 126.18349 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46733 * 270.03975 * 1 2 3 28 28 H 1.08994 * 109.47015 * 30.04410 * 1 2 3 29 29 H 1.09000 * 109.46529 * 150.03889 * 1 2 3 30 30 H 1.07999 * 120.03302 * 0.04033 * 7 6 5 31 31 H 1.08001 * 119.96850 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00094 * 326.59624 * 10 9 8 33 33 H 1.08997 * 109.47232 * 239.69581 * 16 15 14 34 34 H 0.96702 * 114.00240 * 300.00081 * 17 16 15 35 35 H 1.08006 * 122.44540 * 180.24562 * 22 15 14 36 36 H 1.07997 * 123.34964 * 359.97438 * 23 13 11 37 37 H 1.07991 * 119.96940 * 179.74802 * 24 9 8 38 38 H 1.08003 * 120.03042 * 180.27214 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2765 1.0522 0.0000 4 7 3.5093 0.6837 0.0061 5 6 3.5691 -0.6278 0.0013 6 6 4.7971 -1.4492 0.0027 7 6 6.0507 -0.8337 0.0031 8 6 7.1939 -1.6024 0.0038 9 6 7.1005 -2.9899 0.0048 10 7 8.2612 -3.7662 0.0050 11 6 8.2798 -4.9503 0.6483 12 8 7.3188 -5.2992 1.3088 13 6 9.4569 -5.8178 0.5527 14 16 10.9207 -5.4548 -0.3514 15 6 11.6292 -6.9366 0.1106 16 6 13.0036 -7.3927 -0.3064 17 8 13.8136 -7.5875 0.8547 18 14 13.7829 -6.0991 -1.3972 19 1 13.8914 -4.8208 -0.6491 20 1 12.9413 -5.8965 -2.6038 21 1 15.1376 -6.5483 -1.8076 22 6 10.8041 -7.6368 0.8984 23 6 9.5951 -7.0366 1.1563 24 6 5.8539 -3.6059 -0.0004 25 6 4.7068 -2.8427 0.0042 26 8 2.3008 -1.0852 0.0005 27 1 -0.3633 0.0007 1.0277 28 1 -0.3633 0.8895 -0.5145 29 1 -0.3632 -0.8904 -0.5132 30 1 6.1238 0.2438 0.0030 31 1 8.1636 -1.1270 0.0037 32 1 9.0541 -3.4532 -0.4578 33 1 12.9241 -8.3310 -0.8554 34 1 13.9279 -6.7921 1.3925 35 1 11.0689 -8.6032 1.3014 36 1 8.8304 -7.4830 1.7747 37 1 5.7847 -4.6836 -0.0038 38 1 3.7389 -3.3218 0.0046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565816823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:12 Heat of formation + Delta-G solvation = 29.401115 kcal Electronic energy + Delta-G solvation = -25525.330877 eV Core-core repulsion = 21542.094262 eV Total energy + Delta-G solvation = -3983.236614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.28945 -41.87090 -40.00916 -39.22217 -37.36736 -37.35631 -36.36848 -34.13229 -32.31737 -32.23281 -31.20979 -28.90226 -27.69342 -25.58889 -24.44423 -24.37220 -23.55923 -23.10225 -22.17676 -20.79835 -19.64100 -19.08626 -18.65869 -18.59784 -17.69261 -17.40905 -17.24774 -16.70694 -16.56938 -16.29405 -15.94879 -15.72313 -15.35689 -15.30008 -14.80752 -14.58894 -14.44367 -14.12748 -13.99733 -13.97743 -13.72493 -13.63194 -13.59675 -13.49273 -13.08477 -12.71782 -12.60219 -12.44219 -12.22398 -12.15204 -11.97305 -11.72312 -11.40034 -10.79734 -10.63003 -10.21138 -9.96970 -9.68695 -9.23630 -0.91131 -0.63970 0.14559 0.18944 0.43094 0.56017 1.04065 1.06404 1.14437 1.30765 1.39097 1.46188 1.65782 1.88517 1.91534 2.57252 2.66362 3.25455 3.35375 3.42865 3.63792 3.67720 3.74693 3.86993 4.04151 4.12475 4.16896 4.28331 4.29464 4.32971 4.37504 4.52402 4.52695 4.66182 4.81220 4.88529 4.91855 5.00479 5.01473 5.05312 5.15516 5.19569 5.23754 5.65227 6.03428 6.60198 6.72057 7.08946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.173 3.827 3 N -0.326 5.326 4 N -0.306 5.306 5 C 0.209 3.791 6 C -0.059 4.059 7 C -0.044 4.044 8 C -0.133 4.133 9 C 0.171 3.829 10 N -0.660 5.660 11 C 0.595 3.405 12 O -0.538 6.538 13 C -0.287 4.287 14 S 0.221 5.779 15 C -0.222 4.222 16 C -0.040 4.040 17 O -0.544 6.544 18 Si 0.904 3.096 19 H -0.227 1.227 20 H -0.232 1.232 21 H -0.239 1.239 22 C -0.125 4.125 23 C -0.046 4.046 24 C -0.132 4.132 25 C -0.060 4.060 26 O -0.227 6.227 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.172 0.828 32 H 0.426 0.574 33 H 0.140 0.860 34 H 0.392 0.608 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.137 0.863 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -2.293 -2.695 4.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.037 4.037 3 N -0.172 5.172 4 N -0.152 5.152 5 C 0.001 3.999 6 C -0.062 4.062 7 C -0.064 4.064 8 C -0.153 4.153 9 C 0.076 3.924 10 N -0.305 5.305 11 C 0.384 3.616 12 O -0.417 6.417 13 C -0.407 4.407 14 S 0.490 5.510 15 C -0.342 4.342 16 C -0.153 4.153 17 O -0.351 6.351 18 Si 0.724 3.276 19 H -0.150 1.150 20 H -0.155 1.155 21 H -0.162 1.162 22 C -0.156 4.156 23 C -0.080 4.080 24 C -0.153 4.153 25 C -0.080 4.080 26 O -0.107 6.107 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.190 0.810 32 H 0.265 0.735 33 H 0.157 0.843 34 H 0.241 0.759 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.155 0.845 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.721 -0.040 -3.906 5.395 hybrid contribution -0.863 -2.142 1.287 2.643 sum 2.858 -2.182 -2.619 4.448 Atomic orbital electron populations 1.20766 0.76377 1.07501 1.07060 1.29099 0.99363 0.78444 0.96791 1.74335 0.96319 1.26923 1.19654 1.74646 1.12749 1.09102 1.18752 1.25720 0.84172 0.90331 0.99661 1.17353 0.86836 0.91591 1.10417 1.21118 0.89283 1.01435 0.94570 1.21098 1.00409 0.90511 1.03284 1.18018 0.86181 0.90859 0.97361 1.43263 1.14559 1.19330 1.53352 1.17245 0.85992 0.80410 0.77936 1.90876 1.36573 1.73494 1.40716 1.24356 1.00471 1.02371 1.13502 1.82831 1.05326 1.16491 1.46387 1.24882 1.03474 1.00075 1.05739 1.24529 0.85915 1.10559 0.94326 1.86536 1.69642 1.40612 1.38311 0.86103 0.82890 0.78283 0.80332 1.14975 1.15522 1.16215 1.20086 0.92298 1.02909 1.00302 1.20998 0.98022 0.92146 0.96846 1.21069 0.90692 1.01152 1.02340 1.21162 0.99732 0.91269 0.95827 1.84860 1.17061 1.38471 1.70323 0.86252 0.86155 0.86629 0.83112 0.81040 0.73498 0.84274 0.75869 0.82034 0.82701 0.84509 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.35 10.51 71.24 0.75 1.10 16 2 C 0.17 0.98 8.47 88.33 0.75 1.73 16 3 N -0.33 -4.02 12.22 -165.32 -2.02 -6.04 16 4 N -0.31 -4.08 11.91 -166.31 -1.98 -6.06 16 5 C 0.21 1.99 7.98 87.29 0.70 2.69 16 6 C -0.06 -0.33 5.87 -20.08 -0.12 -0.44 16 7 C -0.04 -0.08 9.69 22.50 0.22 0.14 16 8 C -0.13 0.25 9.94 22.35 0.22 0.47 16 9 C 0.17 0.19 6.27 38.29 0.24 0.43 16 10 N -0.66 0.96 5.32 -307.10 -1.63 -0.67 16 11 C 0.59 1.99 7.51 86.41 0.65 2.64 16 12 O -0.54 -5.61 14.53 -4.39 -0.06 -5.67 16 13 C -0.29 0.01 6.45 24.08 0.16 0.17 16 14 S 0.22 -1.11 19.21 -56.49 -1.09 -2.20 16 15 C -0.22 0.95 5.58 24.69 0.14 1.09 16 16 C -0.04 0.24 2.95 71.23 0.21 0.45 16 17 O -0.54 2.31 12.85 -148.98 -1.91 0.39 16 18 Si 0.90 -5.46 26.15 68.60 1.79 -3.66 16 19 H -0.23 1.51 7.11 99.48 0.71 2.21 16 20 H -0.23 1.29 7.11 99.48 0.71 2.00 16 21 H -0.24 0.67 7.11 99.48 0.71 1.38 16 22 C -0.13 0.35 9.95 21.08 0.21 0.56 16 23 C -0.05 0.01 10.01 21.72 0.22 0.23 16 24 C -0.13 -0.53 8.63 22.36 0.19 -0.34 16 25 C -0.06 -0.23 9.72 22.50 0.22 -0.01 16 26 O -0.23 -1.73 10.67 -9.07 -0.10 -1.82 16 27 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 28 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 30 H 0.15 0.12 7.86 -2.91 -0.02 0.09 16 31 H 0.17 -1.47 8.06 -2.91 -0.02 -1.50 16 32 H 0.43 -3.26 7.94 -92.71 -0.74 -4.00 16 33 H 0.14 -1.10 7.96 -2.39 -0.02 -1.12 16 34 H 0.39 -4.13 8.70 -74.06 -0.64 -4.77 16 35 H 0.16 -0.76 8.06 -2.91 -0.02 -0.79 16 36 H 0.16 -0.01 8.06 -2.91 -0.02 -0.04 16 37 H 0.14 0.78 6.42 -2.92 -0.02 0.76 16 38 H 0.14 0.24 7.93 -2.91 -0.02 0.22 16 Total: 0.00 -21.81 349.12 -1.73 -23.54 By element: Atomic # 1 Polarization: -9.24 SS G_CDS: 0.53 Total: -8.71 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 4.75 Total: 10.90 kcal Atomic # 7 Polarization: -7.13 SS G_CDS: -5.63 Total: -12.77 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -2.07 Total: -7.10 kcal Atomic # 14 Polarization: -5.46 SS G_CDS: 1.79 Total: -3.66 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.09 Total: -2.20 kcal Total: -21.81 -1.73 -23.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565816823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.941 kcal (2) G-P(sol) polarization free energy of solvation -21.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds