Wall clock time and date at job start Mon Mar 23 2020 11:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38041 * 126.43875 * 250.19991 * 3 2 1 5 5 N 1.34358 * 107.53025 * 179.97438 * 4 3 2 6 6 N 1.39925 * 108.61599 * 359.77539 * 5 4 3 7 7 C 1.30964 * 108.85198 * 0.38433 * 6 5 4 8 8 N 1.39738 * 126.06286 * 179.88359 * 7 6 5 9 9 C 1.34774 * 119.99803 * 359.69235 * 8 7 6 10 10 O 1.21609 * 120.00395 * 359.97438 * 9 8 7 11 11 C 1.47519 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.39843 * 120.00354 * 359.72567 * 11 9 8 13 13 C 1.36560 * 120.00247 * 180.27825 * 12 11 9 14 14 C 1.39835 * 119.99681 * 359.97438 * 13 12 11 15 15 C 1.47547 * 119.99506 * 179.97438 * 14 13 12 16 16 S 1.75891 * 125.27622 * 179.71537 * 15 14 13 17 17 C 1.75868 * 91.00532 * 179.97438 * 16 15 14 18 18 C 1.50700 * 125.11682 * 180.11025 * 17 16 15 19 19 O 1.42910 * 109.46683 * 245.23608 * 18 17 16 20 20 Si 1.86295 * 109.47405 * 5.23512 * 18 17 16 21 21 H 1.48501 * 109.46825 * 60.00396 * 20 18 17 22 22 H 1.48506 * 109.47187 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47448 * 300.00214 * 20 18 17 24 24 C 1.33766 * 109.75766 * 0.31714 * 17 16 15 25 25 C 1.35013 * 125.28005 * 0.02562 * 15 14 13 26 26 C 1.39826 * 120.00487 * 359.97438 * 14 13 12 27 27 C 1.36550 * 120.00564 * 0.02562 * 26 14 13 28 28 H 1.07997 * 126.23340 * 0.02562 * 4 3 2 29 29 H 0.96995 * 125.69232 * 180.02562 * 5 4 3 30 30 H 0.96998 * 120.00238 * 179.69703 * 8 7 6 31 31 H 1.08001 * 120.00196 * 0.25416 * 12 11 9 32 32 H 1.07995 * 120.00566 * 179.97438 * 13 12 11 33 33 H 1.08996 * 109.47306 * 125.24152 * 18 17 16 34 34 H 0.96696 * 113.99663 * 60.00604 * 19 18 17 35 35 H 1.08003 * 122.45586 * 179.78206 * 24 17 16 36 36 H 1.08000 * 122.64443 * 359.96069 * 25 15 14 37 37 H 1.08001 * 119.99551 * 180.02562 * 26 14 13 38 38 H 1.08005 * 120.00372 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3877 0.3772 1.0449 5 7 4.6588 0.2297 0.6354 6 7 4.6519 -0.2495 -0.6792 7 6 3.4105 -0.3860 -1.0733 8 7 2.9904 -0.8382 -2.3270 9 6 3.9011 -1.1749 -3.2617 10 8 5.0883 -1.0847 -3.0144 11 6 3.4576 -1.6517 -4.5854 12 6 2.0924 -1.7599 -4.8684 13 6 1.6820 -2.2067 -6.0919 14 6 2.6269 -2.5556 -7.0618 15 6 2.1834 -3.0389 -8.3835 16 16 3.2475 -3.5070 -9.7034 17 6 1.8662 -3.8904 -10.7222 18 6 1.9482 -4.4051 -12.1362 19 8 1.4005 -3.4331 -13.0293 20 14 3.7297 -4.7216 -12.5796 21 1 4.2988 -5.7316 -11.6515 22 1 3.8104 -5.2294 -13.9728 23 1 4.5000 -3.4570 -12.4677 24 6 0.7319 -3.6522 -10.0544 25 6 0.8978 -3.1848 -8.7693 26 6 3.9920 -2.4464 -6.7793 27 6 4.4025 -1.9997 -5.5560 28 1 3.0659 0.7259 2.0150 29 1 5.4494 0.4200 1.1642 30 1 2.0435 -0.9098 -2.5245 31 1 1.3626 -1.4905 -4.1193 32 1 0.6277 -2.2907 -6.3103 33 1 1.3828 -5.3333 -12.2184 34 1 1.8555 -2.5801 -13.0093 35 1 -0.2426 -3.8151 -10.4906 36 1 0.0653 -2.9529 -8.1215 37 1 4.7216 -2.7155 -7.5287 38 1 5.4570 -1.9157 -5.3377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638659926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:01 Heat of formation + Delta-G solvation = 102.426782 kcal Electronic energy + Delta-G solvation = -25999.960121 eV Core-core repulsion = 22016.694138 eV Total energy + Delta-G solvation = -3983.265984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66778 -41.34326 -39.95312 -39.02100 -37.53334 -37.38678 -36.29976 -33.70822 -32.47985 -31.76069 -31.57450 -30.39503 -27.39556 -25.24003 -24.32971 -24.00671 -23.67188 -22.82086 -21.30130 -20.57553 -20.30764 -19.10335 -18.54757 -17.84394 -17.57479 -17.42717 -16.82625 -16.69199 -16.34854 -16.27179 -16.17922 -15.70289 -15.64217 -15.29288 -14.94896 -14.73498 -14.54736 -14.48777 -14.26670 -14.12832 -13.96490 -13.62245 -13.48469 -13.37525 -13.14532 -12.58692 -12.44322 -12.39849 -12.26372 -12.07400 -12.01758 -11.50678 -11.23637 -10.82293 -10.52840 -10.25044 -10.13532 -9.69752 -9.58987 -9.07567 -0.97057 0.14436 0.28182 0.34066 0.50359 0.71605 0.90474 1.10173 1.23182 1.34740 1.46471 1.60431 1.61264 1.84740 1.93663 2.06860 2.52160 2.76720 3.00385 3.32217 3.44100 3.53488 3.60559 3.71197 3.75310 3.79391 4.07872 4.14108 4.25931 4.27364 4.41390 4.49883 4.56184 4.58731 4.62001 4.87312 4.98363 5.06568 5.12799 5.25092 5.27232 5.31845 5.46574 5.65063 5.76358 6.27592 6.48636 6.58625 6.60016 6.87119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.312 3.688 3 C -0.229 4.229 4 C 0.188 3.812 5 N -0.436 5.436 6 N -0.318 5.318 7 C 0.334 3.666 8 N -0.629 5.629 9 C 0.558 3.442 10 O -0.521 6.521 11 C -0.149 4.149 12 C -0.068 4.068 13 C -0.107 4.107 14 C 0.012 3.988 15 C -0.158 4.158 16 S 0.090 5.910 17 C -0.217 4.217 18 C -0.032 4.032 19 O -0.544 6.544 20 Si 0.912 3.088 21 H -0.246 1.246 22 H -0.240 1.240 23 H -0.240 1.240 24 C -0.105 4.105 25 C -0.113 4.113 26 C -0.129 4.129 27 C -0.054 4.054 28 H 0.249 0.751 29 H 0.468 0.532 30 H 0.432 0.568 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.390 0.610 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.134 0.866 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 0.921 2.383 2.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.003 4.003 3 C -0.247 4.247 4 C 0.030 3.970 5 N -0.143 5.143 6 N -0.148 5.148 7 C 0.073 3.927 8 N -0.280 5.280 9 C 0.347 3.653 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.086 4.086 13 C -0.127 4.127 14 C 0.010 3.990 15 C -0.275 4.275 16 S 0.357 5.643 17 C -0.335 4.335 18 C -0.146 4.146 19 O -0.351 6.351 20 Si 0.734 3.266 21 H -0.170 1.170 22 H -0.163 1.163 23 H -0.163 1.163 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.073 4.073 28 H 0.265 0.735 29 H 0.318 0.682 30 H 0.273 0.727 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.152 0.848 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.387 0.115 1.526 2.065 hybrid contribution -1.694 0.633 0.729 1.950 sum -0.307 0.748 2.255 2.396 Atomic orbital electron populations 1.81392 1.12589 1.12629 1.08098 1.24420 0.91013 0.91656 0.93194 1.15776 0.85422 1.26802 0.96746 1.23736 0.82631 0.91215 0.99432 1.46089 1.08704 1.49249 1.10244 1.77915 1.16781 1.25109 0.94969 1.19253 0.90876 0.96055 0.86494 1.42786 1.11588 1.64355 1.09296 1.18670 0.85361 0.76683 0.84582 1.90893 1.17294 1.51322 1.79960 1.19759 0.95256 1.07119 0.93119 1.21238 0.93741 0.95883 0.97742 1.21181 1.00872 0.98644 0.91966 1.18487 0.93464 0.96089 0.90932 1.23067 0.96882 1.10196 0.97338 1.84384 1.10264 1.63857 1.05791 1.25213 0.95867 1.10634 1.01773 1.24304 1.11051 0.95501 0.83704 1.86517 1.60886 1.26468 1.61248 0.86018 0.75020 0.82730 0.82836 1.16978 1.16265 1.16298 1.20231 0.99693 0.99955 0.93673 1.20701 0.96233 1.00506 0.96890 1.21030 0.95143 1.01224 0.97337 1.20934 1.00263 0.94242 0.91889 0.73466 0.68157 0.72698 0.82495 0.81985 0.84291 0.76083 0.82153 0.81369 0.84775 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -2.97 18.54 19.00 0.35 -2.62 16 2 C 0.31 0.30 15.62 88.33 1.38 1.68 16 3 C -0.23 0.53 5.98 -21.19 -0.13 0.41 16 4 C 0.19 -1.86 12.00 84.26 1.01 -0.85 16 5 N -0.44 2.72 7.28 -56.26 -0.41 2.32 16 6 N -0.32 -1.63 10.86 -53.91 -0.59 -2.21 16 7 C 0.33 1.00 7.81 133.90 1.05 2.05 16 8 N -0.63 -1.05 5.38 -309.72 -1.67 -2.71 16 9 C 0.56 3.51 7.73 86.69 0.67 4.18 16 10 O -0.52 -7.40 15.05 -4.06 -0.06 -7.46 16 11 C -0.15 -0.36 5.88 -20.05 -0.12 -0.47 16 12 C -0.07 0.22 9.48 22.27 0.21 0.43 16 13 C -0.11 0.36 9.48 22.26 0.21 0.57 16 14 C 0.01 0.00 5.88 -20.05 -0.12 -0.11 16 15 C -0.16 -0.06 6.37 23.99 0.15 0.09 16 16 S 0.09 0.10 19.48 -56.49 -1.10 -1.00 16 17 C -0.22 0.15 5.71 24.67 0.14 0.29 16 18 C -0.03 0.08 2.96 71.24 0.21 0.29 16 19 O -0.54 0.71 12.88 -148.98 -1.92 -1.21 16 20 Si 0.91 -0.87 26.25 68.60 1.80 0.93 16 21 H -0.25 -0.23 7.11 99.48 0.71 0.48 16 22 H -0.24 -0.24 7.11 99.48 0.71 0.46 16 23 H -0.24 0.05 7.11 99.48 0.71 0.75 16 24 C -0.11 0.19 10.03 21.14 0.21 0.41 16 25 C -0.11 0.26 9.64 21.41 0.21 0.47 16 26 C -0.13 -0.24 9.54 22.26 0.21 -0.03 16 27 C -0.05 -0.19 9.53 22.27 0.21 0.02 16 28 H 0.25 -5.07 8.06 -2.91 -0.02 -5.10 16 29 H 0.47 -6.10 8.96 -213.44 -1.91 -8.01 16 30 H 0.43 -1.81 6.62 -92.71 -0.61 -2.43 16 31 H 0.16 -1.48 6.38 -2.91 -0.02 -1.49 16 32 H 0.16 -1.44 6.74 -2.91 -0.02 -1.46 16 33 H 0.14 -0.67 7.96 -2.39 -0.02 -0.69 16 34 H 0.39 -2.77 8.70 -74.06 -0.64 -3.41 16 35 H 0.16 -0.72 8.06 -2.91 -0.02 -0.75 16 36 H 0.17 -1.26 6.88 -2.91 -0.02 -1.28 16 37 H 0.13 0.05 7.26 -2.91 -0.02 0.03 16 38 H 0.13 0.61 7.64 -2.91 -0.02 0.59 16 Total: 0.00 -27.56 353.92 0.71 -26.86 By element: Atomic # 1 Polarization: -21.08 SS G_CDS: -1.22 Total: -22.30 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.51 Total: 9.41 kcal Atomic # 7 Polarization: -2.92 SS G_CDS: -2.31 Total: -5.23 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -1.98 Total: -8.67 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: 1.80 Total: 0.93 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.10 Total: -1.00 kcal Total: -27.56 0.71 -26.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638659926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.285 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds