Wall clock time and date at job start Mon Mar 23 2020 11:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47103 * 2 1 4 4 N 1.46502 * 109.46914 * 120.00117 * 2 1 3 5 5 N 1.40076 * 126.09072 * 300.02294 * 4 2 1 6 6 C 1.30837 * 108.41314 * 179.97438 * 5 4 2 7 7 C 1.39737 * 108.43972 * 0.02562 * 6 5 4 8 8 C 1.35808 * 126.09805 * 120.29343 * 4 2 1 9 9 N 1.39381 * 126.26320 * 0.03328 * 8 4 2 10 10 C 1.34773 * 120.00109 * 180.21069 * 9 8 4 11 11 O 1.21611 * 120.00053 * 0.02562 * 10 9 8 12 12 C 1.47508 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.39851 * 120.00163 * 359.72748 * 12 10 9 14 14 C 1.36557 * 119.99731 * 179.78421 * 13 12 10 15 15 C 1.39835 * 120.00187 * 0.46990 * 14 13 12 16 16 C 1.39824 * 120.00148 * 359.78548 * 15 14 13 17 17 C 1.36551 * 120.00577 * 359.97233 * 16 15 14 18 18 C 1.47549 * 119.99738 * 179.76181 * 15 14 13 19 19 S 1.75893 * 125.27569 * 179.71950 * 18 15 14 20 20 C 1.75865 * 91.00403 * 179.97438 * 19 18 15 21 21 C 1.33777 * 109.76317 * 0.34004 * 20 19 18 22 22 C 1.35016 * 125.27747 * 0.02562 * 18 15 14 23 23 C 1.50703 * 125.11814 * 180.02562 * 20 19 18 24 24 O 1.42909 * 109.46889 * 120.32642 * 23 20 19 25 25 Si 1.86299 * 109.47045 * 0.32592 * 23 20 19 26 26 H 1.48493 * 109.47064 * 60.00122 * 25 23 20 27 27 H 1.48500 * 109.46967 * 180.02562 * 25 23 20 28 28 H 1.48498 * 109.47005 * 299.99969 * 25 23 20 29 29 H 1.08996 * 109.47081 * 300.00267 * 1 2 3 30 30 H 1.09000 * 109.46791 * 60.00289 * 1 2 3 31 31 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47081 * 239.99733 * 2 1 3 33 33 H 1.08994 * 109.47269 * 299.99938 * 3 2 1 34 34 H 1.09005 * 109.47290 * 60.00045 * 3 2 1 35 35 H 1.09005 * 109.47150 * 179.97438 * 3 2 1 36 36 H 1.07992 * 125.77945 * 179.97438 * 6 5 4 37 37 H 1.08002 * 126.06589 * 179.97438 * 7 6 5 38 38 H 0.97001 * 119.99439 * 0.21670 * 9 8 4 39 39 H 1.08002 * 120.00250 * 0.02562 * 13 12 10 40 40 H 1.07997 * 120.00153 * 180.22982 * 14 13 12 41 41 H 1.08003 * 119.99271 * 180.02562 * 16 15 14 42 42 H 1.08002 * 119.99967 * 179.97438 * 17 16 15 43 43 H 1.07992 * 122.46132 * 179.76154 * 21 20 19 44 44 H 1.07998 * 122.64890 * 359.97438 * 22 18 15 45 45 H 1.08999 * 109.46974 * 240.32248 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7594 -0.3253 2.5234 6 6 2.3618 -1.1781 3.3119 7 6 3.0273 -2.1179 2.5204 8 6 2.8069 -1.7962 1.2160 9 7 3.2984 -2.4783 0.1042 10 6 4.0711 -3.5699 0.2707 11 8 4.3392 -3.9600 1.3909 12 6 4.5908 -4.2920 -0.9058 13 6 4.2769 -3.8474 -2.1941 14 6 4.7617 -4.5134 -3.2832 15 6 5.5637 -5.6458 -3.1104 16 6 5.8731 -6.0935 -1.8225 17 6 5.3926 -5.4248 -0.7332 18 6 6.0831 -6.3684 -4.2873 19 16 7.1056 -7.7985 -4.2315 20 6 7.1580 -7.8676 -5.9880 21 6 6.4462 -6.8582 -6.5018 22 6 5.8520 -6.0311 -5.5741 23 6 7.8994 -8.9036 -6.7932 24 8 6.9768 -9.6108 -7.6244 25 14 8.7406 -10.1010 -5.6402 26 1 7.7219 -10.7696 -4.7916 27 1 9.4717 -11.1214 -6.4336 28 1 9.6993 -9.3660 -4.7765 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 2.3479 -1.1584 4.3915 37 1 3.6156 -2.9493 2.8797 38 1 3.0843 -2.1672 -0.7892 39 1 3.6544 -2.9750 -2.3276 40 1 4.5224 -4.1679 -4.2781 41 1 6.4930 -6.9679 -1.6892 42 1 5.6313 -5.7709 0.2616 43 1 6.3439 -6.7037 -7.5657 44 1 5.2497 -5.1795 -5.8540 45 1 8.6471 -8.4127 -7.4161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001290349126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:52 Heat of formation + Delta-G solvation = 44.160954 kcal Electronic energy + Delta-G solvation = -29097.414735 eV Core-core repulsion = 24980.543230 eV Total energy + Delta-G solvation = -4116.871505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84592 -40.30852 -38.77913 -36.91815 -36.11576 -35.27325 -32.81288 -31.45534 -30.97486 -30.35582 -29.16560 -27.81407 -27.53632 -25.18231 -23.47105 -23.28222 -22.91499 -21.88572 -21.08510 -20.46669 -20.13245 -18.76106 -18.28549 -17.34841 -16.67686 -16.01432 -15.86620 -15.30285 -15.29165 -15.04155 -14.93212 -14.63483 -14.37763 -14.17200 -13.81721 -13.67384 -13.46082 -13.35151 -13.27083 -13.08800 -12.74481 -12.62243 -12.54267 -12.11291 -11.91575 -11.88466 -11.79888 -11.53392 -11.36084 -11.26280 -11.03089 -10.86264 -10.59629 -10.20086 -10.05021 -9.91454 -9.64097 -9.30495 -9.26599 -9.23620 -8.35832 -7.83211 -7.33194 -6.08847 -5.50422 0.30835 1.27789 1.46631 1.76137 1.89925 2.18798 2.57608 2.65651 2.70270 2.87523 3.35387 3.41142 3.46833 3.53901 3.88336 3.91313 4.19084 4.35606 4.41034 4.43347 4.51581 4.65056 4.72575 4.82824 5.01039 5.02525 5.07773 5.17291 5.20651 5.25559 5.30776 5.35246 5.57051 5.61324 5.62713 5.67102 5.79332 5.87320 5.89433 6.05202 6.12221 6.19482 6.47474 6.51888 6.52015 6.65076 6.69031 6.89602 6.93388 7.26634 7.32803 7.41690 7.50110 7.68308 9.77389 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.001776 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.416805 B =15763.223053 C =16788.960673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 C -0.161 4.161 4 N -0.385 5.385 5 N -0.288 5.288 6 C 0.057 3.943 7 C -0.279 4.279 8 C 0.307 3.693 9 N -0.650 5.650 10 C 0.574 3.426 11 O -0.504 6.504 12 C -0.166 4.166 13 C -0.073 4.073 14 C -0.129 4.129 15 C 0.065 3.935 16 C -0.136 4.136 17 C -0.037 4.037 18 C -0.225 4.225 19 S 0.054 5.946 20 C -0.078 4.078 21 C -0.181 4.181 22 C -0.075 4.075 23 C 0.053 3.947 24 O -0.843 6.843 25 Si 0.836 3.164 26 H -0.263 1.263 27 H -0.261 1.261 28 H -0.284 1.284 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.185 0.815 37 H 0.173 0.827 38 H 0.408 0.592 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 21.547 15.209 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 C -0.219 4.219 4 N -0.175 5.175 5 N -0.110 5.110 6 C -0.129 4.129 7 C -0.311 4.311 8 C 0.088 3.912 9 N -0.298 5.298 10 C 0.364 3.636 11 O -0.378 6.378 12 C -0.170 4.170 13 C -0.091 4.091 14 C -0.149 4.149 15 C 0.062 3.938 16 C -0.155 4.155 17 C -0.055 4.055 18 C -0.341 4.341 19 S 0.319 5.681 20 C -0.197 4.197 21 C -0.208 4.208 22 C -0.108 4.108 23 C -0.069 4.069 24 O -0.790 6.790 25 Si 0.664 3.336 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.212 1.212 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.202 0.798 37 H 0.190 0.810 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -9.681 20.688 17.308 28.658 hybrid contribution -0.345 0.389 -1.702 1.780 sum -10.026 21.077 15.606 28.077 Atomic orbital electron populations 1.22134 0.92939 1.03122 1.03645 1.21230 0.95933 0.94060 0.83304 1.22137 1.01808 0.94260 1.03652 1.49005 1.40803 1.21535 1.06132 1.77354 1.24912 1.23501 0.85234 1.23770 0.96019 0.92953 1.00174 1.21690 1.12974 1.07242 0.89167 1.18138 0.95164 0.88788 0.89148 1.42835 1.50923 1.28598 1.07439 1.18256 0.77054 0.78616 0.89635 1.90729 1.56632 1.65391 1.25084 1.19478 1.05884 0.99949 0.91676 1.20794 0.98107 0.98675 0.91573 1.20840 0.99102 0.95734 0.99181 1.18460 0.92010 0.92007 0.91276 1.21021 1.01989 1.01220 0.91250 1.20841 0.92940 0.92069 0.99699 1.22583 1.12085 1.03977 0.95422 1.84057 1.49103 1.25714 1.09246 1.27461 1.00239 0.99298 0.92710 1.19803 1.03065 0.97123 1.00769 1.20337 0.99443 0.99882 0.91173 1.22452 0.97436 0.91336 0.95659 1.95022 1.55876 1.68053 1.60029 0.87702 0.79139 0.87010 0.79717 1.18749 1.18510 1.21213 0.90792 0.90558 0.92041 0.89219 0.90555 0.90797 0.92059 0.79814 0.81018 0.75477 0.86181 0.84905 0.84985 0.84396 0.84389 0.85180 0.97347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.45 37.16 0.35 -0.55 16 2 C 0.16 0.99 3.70 -67.93 -0.25 0.74 16 3 C -0.16 -0.89 9.45 37.15 0.35 -0.54 16 4 N -0.39 -3.71 3.30 -53.78 -0.18 -3.89 16 5 N -0.29 -3.14 12.42 30.60 0.38 -2.76 16 6 C 0.06 0.58 12.00 -17.42 -0.21 0.37 16 7 C -0.28 -3.28 9.65 -39.77 -0.38 -3.67 16 8 C 0.31 3.33 7.68 -152.74 -1.17 2.16 16 9 N -0.65 -6.04 5.36 -12.29 -0.07 -6.11 16 10 C 0.57 6.67 7.72 -12.48 -0.10 6.57 16 11 O -0.50 -7.17 13.46 5.27 0.07 -7.10 16 12 C -0.17 -1.87 5.88 -104.91 -0.62 -2.49 16 13 C -0.07 -0.69 9.48 -39.59 -0.38 -1.07 16 14 C -0.13 -1.48 9.48 -39.59 -0.38 -1.86 16 15 C 0.06 0.94 5.88 -104.91 -0.62 0.32 16 16 C -0.14 -1.87 9.54 -39.60 -0.38 -2.25 16 17 C -0.04 -0.45 9.53 -39.59 -0.38 -0.83 16 18 C -0.22 -4.01 6.37 -36.93 -0.24 -4.24 16 19 S 0.05 1.13 19.46 -107.50 -2.09 -0.96 16 20 C -0.08 -1.93 5.76 -35.87 -0.21 -2.14 16 21 C -0.18 -3.98 10.00 -41.32 -0.41 -4.40 16 22 C -0.08 -1.35 9.64 -40.90 -0.39 -1.74 16 23 C 0.05 1.51 3.05 36.01 0.11 1.62 16 24 O -0.84 -29.61 17.99 -35.23 -0.63 -30.24 16 25 Si 0.84 20.89 26.49 -169.99 -4.50 16.38 16 26 H -0.26 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.26 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.38 6.84 -51.93 -0.36 0.03 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.17 2.21 5.83 -52.49 -0.31 1.90 16 38 H 0.41 2.52 5.56 -40.82 -0.23 2.29 16 39 H 0.12 0.69 6.38 -52.49 -0.33 0.35 16 40 H 0.13 1.29 6.74 -52.49 -0.35 0.94 16 41 H 0.13 1.80 7.26 -52.48 -0.38 1.42 16 42 H 0.14 1.59 7.64 -52.49 -0.40 1.19 16 43 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 44 H 0.13 1.81 6.88 -52.49 -0.36 1.45 16 45 H 0.01 0.27 7.96 -51.93 -0.41 -0.15 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -36.85 390.13 -11.74 -48.59 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -5.31 Total: -5.80 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -5.29 Total: -13.99 kcal Atomic # 7 Polarization: -12.90 SS G_CDS: 0.14 Total: -12.76 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.56 Total: -37.34 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.50 Total: 16.38 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.09 Total: -0.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.85 -11.74 -48.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290349126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.753 kcal (2) G-P(sol) polarization free energy of solvation -36.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds