Wall clock time and date at job start Mon Mar 23 2020 11:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47103 * 2 1 4 4 N 1.46502 * 109.46914 * 120.00117 * 2 1 3 5 5 N 1.40076 * 126.09072 * 300.02294 * 4 2 1 6 6 C 1.30837 * 108.41314 * 179.97438 * 5 4 2 7 7 C 1.39737 * 108.43972 * 0.02562 * 6 5 4 8 8 C 1.35808 * 126.09805 * 120.29343 * 4 2 1 9 9 N 1.39381 * 126.26320 * 0.03328 * 8 4 2 10 10 C 1.34773 * 120.00109 * 180.21069 * 9 8 4 11 11 O 1.21611 * 120.00053 * 0.02562 * 10 9 8 12 12 C 1.47508 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.39851 * 120.00163 * 359.72748 * 12 10 9 14 14 C 1.36557 * 119.99731 * 179.78421 * 13 12 10 15 15 C 1.39835 * 120.00187 * 0.46990 * 14 13 12 16 16 C 1.39824 * 120.00148 * 359.78548 * 15 14 13 17 17 C 1.36551 * 120.00577 * 359.97233 * 16 15 14 18 18 C 1.47549 * 119.99738 * 179.76181 * 15 14 13 19 19 S 1.75893 * 125.27569 * 179.71950 * 18 15 14 20 20 C 1.75865 * 91.00403 * 179.97438 * 19 18 15 21 21 C 1.33777 * 109.76317 * 0.34004 * 20 19 18 22 22 C 1.35016 * 125.27747 * 0.02562 * 18 15 14 23 23 C 1.50703 * 125.11814 * 180.02562 * 20 19 18 24 24 O 1.42909 * 109.46889 * 120.32642 * 23 20 19 25 25 Si 1.86299 * 109.47045 * 0.32592 * 23 20 19 26 26 H 1.48493 * 109.47064 * 60.00122 * 25 23 20 27 27 H 1.48500 * 109.46967 * 180.02562 * 25 23 20 28 28 H 1.48498 * 109.47005 * 299.99969 * 25 23 20 29 29 H 1.08996 * 109.47081 * 300.00267 * 1 2 3 30 30 H 1.09000 * 109.46791 * 60.00289 * 1 2 3 31 31 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47081 * 239.99733 * 2 1 3 33 33 H 1.08994 * 109.47269 * 299.99938 * 3 2 1 34 34 H 1.09005 * 109.47290 * 60.00045 * 3 2 1 35 35 H 1.09005 * 109.47150 * 179.97438 * 3 2 1 36 36 H 1.07992 * 125.77945 * 179.97438 * 6 5 4 37 37 H 1.08002 * 126.06589 * 179.97438 * 7 6 5 38 38 H 0.97001 * 119.99439 * 0.21670 * 9 8 4 39 39 H 1.08002 * 120.00250 * 0.02562 * 13 12 10 40 40 H 1.07997 * 120.00153 * 180.22982 * 14 13 12 41 41 H 1.08003 * 119.99271 * 180.02562 * 16 15 14 42 42 H 1.08002 * 119.99967 * 179.97438 * 17 16 15 43 43 H 1.07992 * 122.46132 * 179.76154 * 21 20 19 44 44 H 1.07998 * 122.64890 * 359.97438 * 22 18 15 45 45 H 1.08999 * 109.46974 * 240.32248 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7594 -0.3253 2.5234 6 6 2.3618 -1.1781 3.3119 7 6 3.0273 -2.1179 2.5204 8 6 2.8069 -1.7962 1.2160 9 7 3.2984 -2.4783 0.1042 10 6 4.0711 -3.5699 0.2707 11 8 4.3392 -3.9600 1.3909 12 6 4.5908 -4.2920 -0.9058 13 6 4.2769 -3.8474 -2.1941 14 6 4.7617 -4.5134 -3.2832 15 6 5.5637 -5.6458 -3.1104 16 6 5.8731 -6.0935 -1.8225 17 6 5.3926 -5.4248 -0.7332 18 6 6.0831 -6.3684 -4.2873 19 16 7.1056 -7.7985 -4.2315 20 6 7.1580 -7.8676 -5.9880 21 6 6.4462 -6.8582 -6.5018 22 6 5.8520 -6.0311 -5.5741 23 6 7.8994 -8.9036 -6.7932 24 8 6.9768 -9.6108 -7.6244 25 14 8.7406 -10.1010 -5.6402 26 1 7.7219 -10.7696 -4.7916 27 1 9.4717 -11.1214 -6.4336 28 1 9.6993 -9.3660 -4.7765 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 2.3479 -1.1584 4.3915 37 1 3.6156 -2.9493 2.8797 38 1 3.0843 -2.1672 -0.7892 39 1 3.6544 -2.9750 -2.3276 40 1 4.5224 -4.1679 -4.2781 41 1 6.4930 -6.9679 -1.6892 42 1 5.6313 -5.7709 0.2616 43 1 6.3439 -6.7037 -7.5657 44 1 5.2497 -5.1795 -5.8540 45 1 8.6471 -8.4127 -7.4161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290349126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:51 Heat of formation + Delta-G solvation = 20.165557 kcal Electronic energy + Delta-G solvation = -29098.455254 eV Core-core repulsion = 24980.543230 eV Total energy + Delta-G solvation = -4117.912024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.63058 -41.20983 -39.81737 -38.39764 -36.67726 -36.11107 -34.34658 -32.74881 -32.24214 -31.07579 -30.13586 -29.06025 -28.21698 -26.61824 -24.59636 -24.07458 -23.89547 -23.07469 -22.54588 -21.22940 -20.99439 -19.77383 -19.37971 -18.25338 -18.04533 -16.89601 -16.81710 -16.64541 -16.06456 -15.91869 -15.71463 -15.62469 -15.53860 -15.38351 -14.92291 -14.87976 -14.55020 -14.44262 -14.13284 -13.97475 -13.91029 -13.73531 -13.13417 -13.12819 -13.03792 -13.01292 -12.95323 -12.53224 -12.37505 -12.30780 -12.17202 -12.14474 -12.02140 -11.83892 -11.61765 -11.42993 -11.13083 -10.55305 -10.16395 -9.97673 -9.43310 -9.21279 -8.82463 -8.50981 -7.88224 -0.79019 0.34073 0.37347 0.58431 0.82326 0.99285 1.02474 1.30901 1.41608 1.54206 1.63652 1.92120 1.97004 2.10757 2.42714 2.84516 3.32122 3.42228 3.62884 3.71817 3.86294 3.91793 3.98110 4.05592 4.22580 4.27955 4.37080 4.44327 4.47848 4.59242 4.66778 4.67539 4.73445 4.77997 4.79755 4.80506 4.90487 4.95853 5.07010 5.12066 5.18656 5.21894 5.22338 5.24175 5.28130 5.42902 5.68108 5.71662 5.75000 5.75643 5.92388 6.18628 6.72645 6.85284 7.56762 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.001776 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.416805 B =15763.223053 C =16788.960673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 C -0.156 4.156 4 N -0.379 5.379 5 N -0.306 5.306 6 C 0.054 3.946 7 C -0.304 4.304 8 C 0.300 3.700 9 N -0.632 5.632 10 C 0.575 3.425 11 O -0.534 6.534 12 C -0.154 4.154 13 C -0.057 4.057 14 C -0.113 4.113 15 C 0.030 3.970 16 C -0.139 4.139 17 C -0.046 4.046 18 C -0.186 4.186 19 S 0.053 5.947 20 C -0.151 4.151 21 C -0.172 4.172 22 C -0.087 4.087 23 C 0.009 3.991 24 O -0.928 6.928 25 Si 0.887 3.113 26 H -0.273 1.273 27 H -0.267 1.267 28 H -0.239 1.239 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.208 0.792 37 H 0.157 0.843 38 H 0.425 0.575 39 H 0.170 0.830 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.180 0.820 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 25.162 16.719 32.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 C -0.214 4.214 4 N -0.169 5.169 5 N -0.128 5.128 6 C -0.131 4.131 7 C -0.336 4.336 8 C 0.080 3.920 9 N -0.281 5.281 10 C 0.365 3.635 11 O -0.410 6.410 12 C -0.158 4.158 13 C -0.076 4.076 14 C -0.132 4.132 15 C 0.027 3.973 16 C -0.158 4.158 17 C -0.065 4.065 18 C -0.302 4.302 19 S 0.317 5.683 20 C -0.269 4.269 21 C -0.200 4.200 22 C -0.118 4.118 23 C -0.111 4.111 24 O -0.878 6.878 25 Si 0.714 3.286 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.164 1.164 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.225 0.775 37 H 0.174 0.826 38 H 0.266 0.734 39 H 0.187 0.813 40 H 0.179 0.821 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.144 0.856 44 H 0.197 0.803 45 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -11.329 24.347 18.809 32.786 hybrid contribution 0.030 -0.433 -1.953 2.001 sum -11.298 23.915 16.855 31.363 Atomic orbital electron populations 1.22109 0.92398 1.02715 1.04152 1.21687 0.96454 0.94596 0.82923 1.22111 1.01273 0.93829 1.04152 1.49291 1.40010 1.21031 1.06557 1.77319 1.25377 1.23990 0.86110 1.24156 0.95322 0.92236 1.01393 1.21716 1.13913 1.07628 0.90317 1.18174 0.95343 0.89243 0.89269 1.42583 1.49920 1.27633 1.07980 1.18314 0.77059 0.78943 0.89211 1.90743 1.57713 1.66288 1.26256 1.19609 1.04598 0.99017 0.92526 1.21222 0.97227 0.99371 0.89738 1.21157 0.97032 0.93878 1.01174 1.18489 0.94851 0.93996 0.89926 1.20996 1.02006 1.01193 0.91560 1.20875 0.93521 0.92723 0.99404 1.22954 1.08944 1.01467 0.96847 1.83763 1.50726 1.28138 1.05641 1.26664 1.03897 1.01024 0.95303 1.20050 1.01861 0.96899 1.01181 1.20519 1.00314 1.00933 0.89997 1.22930 0.97368 0.93722 0.97063 1.94908 1.58452 1.71144 1.63279 0.86814 0.78825 0.84372 0.78605 1.19879 1.19171 1.16352 0.92462 0.87906 0.92842 0.86353 0.87901 0.92480 0.92767 0.77509 0.82578 0.73427 0.81269 0.82120 0.85797 0.84305 0.85585 0.80296 0.98871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.45 71.98 0.68 -0.57 16 2 C 0.14 1.28 3.70 44.99 0.17 1.45 16 3 C -0.16 -1.22 9.45 71.98 0.68 -0.53 16 4 N -0.38 -6.32 3.30 -324.07 -1.07 -7.39 16 5 N -0.31 -6.19 12.42 -57.12 -0.71 -6.90 16 6 C 0.05 1.04 12.00 85.20 1.02 2.07 16 7 C -0.30 -6.81 9.65 22.15 0.21 -6.59 16 8 C 0.30 5.75 7.68 131.19 1.01 6.76 16 9 N -0.63 -9.23 5.36 -311.07 -1.67 -10.90 16 10 C 0.57 11.49 7.72 86.69 0.67 12.16 16 11 O -0.53 -14.37 13.46 -4.07 -0.05 -14.43 16 12 C -0.15 -2.83 5.88 -20.05 -0.12 -2.95 16 13 C -0.06 -0.74 9.48 22.27 0.21 -0.53 16 14 C -0.11 -1.94 9.48 22.26 0.21 -1.73 16 15 C 0.03 0.76 5.88 -20.05 -0.12 0.64 16 16 C -0.14 -3.49 9.54 22.26 0.21 -3.28 16 17 C -0.05 -1.03 9.53 22.27 0.21 -0.81 16 18 C -0.19 -6.20 6.37 23.99 0.15 -6.05 16 19 S 0.05 2.17 19.46 -56.49 -1.10 1.07 16 20 C -0.15 -7.71 5.76 24.67 0.14 -7.57 16 21 C -0.17 -7.69 10.00 21.14 0.21 -7.48 16 22 C -0.09 -2.90 9.64 21.41 0.21 -2.69 16 23 C 0.01 0.51 3.05 71.24 0.22 0.73 16 24 O -0.93 -69.52 17.99 -148.98 -2.68 -72.20 16 25 Si 0.89 44.77 26.49 68.60 1.82 46.58 16 26 H -0.27 -14.13 7.11 99.48 0.71 -13.43 16 27 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.24 -10.14 7.11 99.48 0.71 -9.44 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.12 0.36 6.84 -2.39 -0.02 0.34 16 33 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.16 3.99 5.83 -2.91 -0.02 3.98 16 38 H 0.43 2.79 5.56 -92.71 -0.52 2.28 16 39 H 0.17 0.54 6.38 -2.91 -0.02 0.52 16 40 H 0.16 1.94 6.74 -2.91 -0.02 1.92 16 41 H 0.12 3.25 7.26 -2.91 -0.02 3.23 16 42 H 0.14 3.02 7.64 -2.91 -0.02 3.00 16 43 H 0.13 5.75 8.06 -2.91 -0.02 5.73 16 44 H 0.18 4.12 6.88 -2.91 -0.02 4.10 16 45 H -0.01 -0.33 7.96 -2.39 -0.02 -0.35 16 Total: -1.00 -88.53 390.13 1.81 -86.72 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: 1.29 Total: -5.58 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.98 Total: -16.97 kcal Atomic # 7 Polarization: -21.74 SS G_CDS: -3.45 Total: -25.19 kcal Atomic # 8 Polarization: -83.90 SS G_CDS: -2.74 Total: -86.63 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.82 Total: 46.58 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.10 Total: 1.07 kcal Total: -88.53 1.81 -86.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290349126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.890 kcal (2) G-P(sol) polarization free energy of solvation -88.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds