Wall clock time and date at job start Mon Mar 23 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46956 * 2 1 4 4 N 1.40079 * 126.08955 * 275.50876 * 3 2 1 5 5 C 1.30841 * 108.40797 * 180.25008 * 4 3 2 6 6 C 1.39732 * 108.44312 * 359.76588 * 5 4 3 7 7 C 1.50692 * 126.07114 * 180.02562 * 6 5 4 8 8 C 1.35806 * 126.09425 * 95.34681 * 3 2 1 9 9 N 1.39371 * 126.26636 * 0.02562 * 8 3 2 10 10 C 1.34770 * 120.00473 * 148.70942 * 9 8 3 11 11 O 1.21621 * 119.99611 * 353.97145 * 10 9 8 12 12 C 1.47511 * 120.00664 * 173.96916 * 10 9 8 13 13 C 1.39844 * 120.01072 * 180.02562 * 12 10 9 14 14 C 1.36554 * 120.00204 * 180.02562 * 13 12 10 15 15 C 1.39824 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.39825 * 120.01006 * 0.25484 * 15 14 13 17 17 C 1.36555 * 119.99977 * 359.48457 * 16 15 14 18 18 C 1.47554 * 119.99477 * 179.97438 * 15 14 13 19 19 S 1.75897 * 125.27861 * 359.97349 * 18 15 14 20 20 C 1.75854 * 91.00745 * 180.02562 * 19 18 15 21 21 C 1.33772 * 109.76119 * 359.97438 * 20 19 18 22 22 C 1.35013 * 125.27909 * 179.97438 * 18 15 14 23 23 C 1.50706 * 125.12262 * 180.26887 * 20 19 18 24 24 O 1.42897 * 109.47163 * 119.69067 * 23 20 19 25 25 Si 1.86298 * 109.46544 * 359.68869 * 23 20 19 26 26 H 1.48499 * 109.47146 * 60.00605 * 25 23 20 27 27 H 1.48503 * 109.46888 * 180.02562 * 25 23 20 28 28 H 1.48498 * 109.47454 * 299.99787 * 25 23 20 29 29 H 1.09002 * 109.47099 * 300.00151 * 1 2 3 30 30 H 1.08998 * 109.47398 * 60.00010 * 1 2 3 31 31 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47099 * 239.99849 * 2 1 3 33 33 H 1.08998 * 109.47398 * 119.99990 * 2 1 3 34 34 H 1.07994 * 125.77735 * 179.80643 * 5 4 3 35 35 H 1.09009 * 109.46862 * 275.44960 * 7 6 5 36 36 H 1.08999 * 109.47567 * 35.44793 * 7 6 5 37 37 H 1.08998 * 109.47446 * 155.45607 * 7 6 5 38 38 H 0.97005 * 119.99659 * 328.71544 * 9 8 3 39 39 H 1.08005 * 119.99581 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.00014 * 180.02562 * 14 13 12 41 41 H 1.07998 * 120.00436 * 179.75125 * 16 15 14 42 42 H 1.08001 * 120.00601 * 180.25583 * 17 16 15 43 43 H 1.08004 * 122.45786 * 179.97438 * 21 20 19 44 44 H 1.07999 * 122.64581 * 0.02562 * 22 18 15 45 45 H 1.09001 * 109.46808 * 239.69353 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1909 2.1954 -1.1267 5 6 2.6474 3.3562 -0.7317 6 6 2.7784 3.3296 0.6592 7 6 3.2710 4.4598 1.5258 8 6 2.3814 2.1015 1.0926 9 7 2.3578 1.6619 2.4150 10 6 3.2585 2.1351 3.2987 11 8 4.1587 2.8602 2.9202 12 6 3.1528 1.7739 4.7250 13 6 4.0871 2.2654 5.6421 14 6 3.9893 1.9304 6.9623 15 6 2.9553 1.0956 7.3971 16 6 2.0244 0.5993 6.4793 17 6 2.1189 0.9384 5.1599 18 6 2.8501 0.7333 8.8236 19 16 3.9450 1.2697 10.0914 20 6 3.0368 0.3703 11.2991 21 6 2.0076 -0.2559 10.7175 22 6 1.8984 -0.0614 9.3581 23 6 3.3642 0.3185 12.7693 24 8 2.2642 0.8354 13.5208 25 14 4.8822 1.3454 13.1038 26 1 4.6263 2.7522 12.7029 27 1 5.2053 1.2939 14.5523 28 1 6.0253 0.8082 12.3228 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.8825 4.1934 -1.3722 35 1 4.3605 4.4442 1.5585 36 1 2.9336 5.4095 1.1109 37 1 2.8756 4.3430 2.5348 38 1 1.6930 1.0151 2.6992 39 1 4.8865 2.9092 5.3061 40 1 4.7106 2.3104 7.6707 41 1 1.2282 -0.0487 6.8145 42 1 1.3975 0.5585 4.4516 43 1 1.3137 -0.8695 11.2728 44 1 1.1140 -0.5098 8.7665 45 1 3.5520 -0.7141 13.0635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001453039558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:55 Heat of formation + Delta-G solvation = 49.260577 kcal Electronic energy + Delta-G solvation = -29401.805332 eV Core-core repulsion = 25285.154963 eV Total energy + Delta-G solvation = -4116.650369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93589 -40.28603 -38.77121 -36.90977 -35.49984 -34.83157 -32.84597 -31.62863 -31.29155 -30.85148 -29.79683 -27.65291 -26.43119 -25.09495 -24.00003 -23.16578 -22.91560 -21.60705 -21.29398 -20.89479 -19.66730 -18.69346 -18.20910 -17.49411 -16.67978 -16.23119 -15.72840 -15.46548 -15.29379 -15.01773 -14.75622 -14.58050 -14.29847 -13.94196 -13.80073 -13.63978 -13.38631 -13.36168 -13.15486 -13.01478 -12.69161 -12.50216 -12.32579 -12.18577 -12.07009 -11.82388 -11.80712 -11.50789 -11.30550 -11.16817 -11.02181 -10.70068 -10.58968 -10.10350 -10.03758 -9.91069 -9.63359 -9.26625 -9.24176 -9.20819 -8.24087 -7.82413 -7.32104 -6.08391 -5.50022 0.33556 1.29477 1.42005 1.77830 1.90279 2.19618 2.49875 2.70065 2.72381 2.82578 3.35653 3.41480 3.47163 3.54849 3.89741 4.03776 4.26516 4.43733 4.44975 4.54720 4.61060 4.68107 4.74678 4.84580 4.96899 5.05815 5.12245 5.19100 5.27430 5.32620 5.49901 5.52444 5.53653 5.61401 5.81035 5.84981 5.88612 6.02399 6.05275 6.13113 6.17127 6.20418 6.48711 6.49398 6.53008 6.67032 6.70361 6.85469 6.90710 7.27454 7.33383 7.42313 7.44874 7.74448 9.77907 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.001858 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.871094 B =15069.892814 C =16059.118369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 N -0.385 5.385 4 N -0.287 5.287 5 C 0.061 3.939 6 C -0.228 4.228 7 C -0.053 4.053 8 C 0.304 3.696 9 N -0.653 5.653 10 C 0.565 3.435 11 O -0.496 6.496 12 C -0.165 4.165 13 C -0.038 4.038 14 C -0.136 4.136 15 C 0.063 3.937 16 C -0.129 4.129 17 C -0.073 4.073 18 C -0.224 4.224 19 S 0.054 5.946 20 C -0.079 4.079 21 C -0.181 4.181 22 C -0.076 4.076 23 C 0.054 3.946 24 O -0.843 6.843 25 Si 0.836 3.164 26 H -0.263 1.263 27 H -0.261 1.261 28 H -0.284 1.284 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.185 0.815 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.409 0.591 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -1.565 -27.406 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.174 5.174 4 N -0.108 5.108 5 C -0.125 4.125 6 C -0.242 4.242 7 C -0.111 4.111 8 C 0.085 3.915 9 N -0.303 5.303 10 C 0.355 3.645 11 O -0.370 6.370 12 C -0.169 4.169 13 C -0.057 4.057 14 C -0.155 4.155 15 C 0.061 3.939 16 C -0.149 4.149 17 C -0.092 4.092 18 C -0.340 4.340 19 S 0.318 5.682 20 C -0.198 4.198 21 C -0.207 4.207 22 C -0.109 4.109 23 C -0.069 4.069 24 O -0.790 6.790 25 Si 0.664 3.336 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.212 1.212 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.202 0.798 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.247 0.753 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -0.027 -0.368 -28.204 28.207 hybrid contribution -1.563 -0.952 0.708 1.962 sum -1.591 -1.319 -27.497 27.574 Atomic orbital electron populations 1.22216 0.94100 1.03253 1.03391 1.21657 0.95371 0.77956 1.04469 1.48812 1.54026 1.11828 1.02703 1.77393 1.24070 1.03306 1.06075 1.23590 0.98573 0.96104 0.94205 1.19705 1.14682 0.95182 0.94584 1.20153 1.01278 0.92786 0.96852 1.17674 1.02262 0.90992 0.80539 1.42713 1.35016 1.46914 1.05653 1.18315 0.81091 0.79623 0.85460 1.90897 1.32218 1.34488 1.79351 1.19527 1.00392 1.05325 0.91640 1.20832 0.96771 0.96229 0.91879 1.21016 0.98981 0.99590 0.95886 1.18451 0.92811 0.92338 0.90293 1.20839 0.99922 1.01828 0.92264 1.20811 0.96234 0.96101 0.96060 1.22588 1.05025 1.11208 0.95171 1.84049 1.32176 1.52693 0.99238 1.27454 0.95909 0.94132 1.02292 1.19800 1.01124 1.06755 0.93056 1.20334 0.97771 0.97578 0.95220 1.22447 1.03355 0.96665 0.84385 1.95020 1.38344 1.81258 1.64347 0.87705 0.79747 0.84461 0.81662 1.18731 1.18524 1.21236 0.92188 0.91245 0.90283 0.88408 0.89353 0.79778 0.90805 0.93375 0.92621 0.75331 0.84478 0.85055 0.84966 0.86133 0.84410 0.85193 0.97374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.24 37.16 0.38 -0.43 16 2 C 0.13 0.76 7.11 -4.04 -0.03 0.73 16 3 N -0.39 -3.76 3.64 -60.27 -0.22 -3.98 16 4 N -0.29 -3.21 12.56 30.60 0.38 -2.82 16 5 C 0.06 0.63 11.94 -17.42 -0.21 0.42 16 6 C -0.23 -2.60 5.79 -104.82 -0.61 -3.21 16 7 C -0.05 -0.59 8.25 36.00 0.30 -0.29 16 8 C 0.30 3.26 7.38 -152.75 -1.13 2.13 16 9 N -0.65 -5.96 5.15 -12.29 -0.06 -6.02 16 10 C 0.56 6.40 6.72 -12.48 -0.08 6.31 16 11 O -0.50 -6.83 11.51 5.26 0.06 -6.77 16 12 C -0.17 -1.84 5.88 -104.91 -0.62 -2.45 16 13 C -0.04 -0.47 9.53 -39.59 -0.38 -0.85 16 14 C -0.14 -1.87 9.54 -39.60 -0.38 -2.24 16 15 C 0.06 0.92 5.88 -104.91 -0.62 0.31 16 16 C -0.13 -1.49 9.48 -39.60 -0.38 -1.86 16 17 C -0.07 -0.70 9.48 -39.58 -0.38 -1.07 16 18 C -0.22 -4.00 6.37 -36.93 -0.24 -4.24 16 19 S 0.05 1.13 19.46 -107.50 -2.09 -0.97 16 20 C -0.08 -1.96 5.76 -35.87 -0.21 -2.16 16 21 C -0.18 -3.99 10.00 -41.32 -0.41 -4.40 16 22 C -0.08 -1.37 9.64 -40.90 -0.39 -1.76 16 23 C 0.05 1.52 3.05 36.01 0.11 1.63 16 24 O -0.84 -29.63 17.99 -35.23 -0.63 -30.26 16 25 Si 0.84 20.90 26.49 -169.99 -4.50 16.40 16 26 H -0.26 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.26 -6.55 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 34 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.07 0.90 7.15 -51.92 -0.37 0.53 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.68 6.10 -51.93 -0.32 0.36 16 38 H 0.41 2.50 6.75 -40.82 -0.28 2.22 16 39 H 0.14 1.57 7.64 -52.48 -0.40 1.17 16 40 H 0.13 1.80 7.26 -52.49 -0.38 1.42 16 41 H 0.13 1.30 6.74 -52.49 -0.35 0.94 16 42 H 0.12 0.70 6.40 -52.49 -0.34 0.36 16 43 H 0.14 3.00 8.06 -52.48 -0.42 2.58 16 44 H 0.13 1.82 6.88 -52.49 -0.36 1.46 16 45 H 0.01 0.26 7.96 -51.93 -0.41 -0.16 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -37.05 387.78 -11.85 -48.91 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -5.38 Total: -6.89 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -5.26 Total: -13.44 kcal Atomic # 7 Polarization: -12.93 SS G_CDS: 0.10 Total: -12.83 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.57 Total: -37.03 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.50 Total: 16.40 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.09 Total: -0.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.05 -11.85 -48.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453039558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.168 kcal (2) G-P(sol) polarization free energy of solvation -37.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds