Wall clock time and date at job start Mon Mar 23 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46956 * 2 1 4 4 N 1.40079 * 126.08955 * 275.50876 * 3 2 1 5 5 C 1.30841 * 108.40797 * 180.25008 * 4 3 2 6 6 C 1.39732 * 108.44312 * 359.76588 * 5 4 3 7 7 C 1.50692 * 126.07114 * 180.02562 * 6 5 4 8 8 C 1.35806 * 126.09425 * 95.34681 * 3 2 1 9 9 N 1.39371 * 126.26636 * 0.02562 * 8 3 2 10 10 C 1.34770 * 120.00473 * 148.70942 * 9 8 3 11 11 O 1.21621 * 119.99611 * 353.97145 * 10 9 8 12 12 C 1.47511 * 120.00664 * 173.96916 * 10 9 8 13 13 C 1.39844 * 120.01072 * 180.02562 * 12 10 9 14 14 C 1.36554 * 120.00204 * 180.02562 * 13 12 10 15 15 C 1.39824 * 119.99924 * 0.02562 * 14 13 12 16 16 C 1.39825 * 120.01006 * 0.25484 * 15 14 13 17 17 C 1.36555 * 119.99977 * 359.48457 * 16 15 14 18 18 C 1.47554 * 119.99477 * 179.97438 * 15 14 13 19 19 S 1.75897 * 125.27861 * 359.97349 * 18 15 14 20 20 C 1.75854 * 91.00745 * 180.02562 * 19 18 15 21 21 C 1.33772 * 109.76119 * 359.97438 * 20 19 18 22 22 C 1.35013 * 125.27909 * 179.97438 * 18 15 14 23 23 C 1.50706 * 125.12262 * 180.26887 * 20 19 18 24 24 O 1.42897 * 109.47163 * 119.69067 * 23 20 19 25 25 Si 1.86298 * 109.46544 * 359.68869 * 23 20 19 26 26 H 1.48499 * 109.47146 * 60.00605 * 25 23 20 27 27 H 1.48503 * 109.46888 * 180.02562 * 25 23 20 28 28 H 1.48498 * 109.47454 * 299.99787 * 25 23 20 29 29 H 1.09002 * 109.47099 * 300.00151 * 1 2 3 30 30 H 1.08998 * 109.47398 * 60.00010 * 1 2 3 31 31 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47099 * 239.99849 * 2 1 3 33 33 H 1.08998 * 109.47398 * 119.99990 * 2 1 3 34 34 H 1.07994 * 125.77735 * 179.80643 * 5 4 3 35 35 H 1.09009 * 109.46862 * 275.44960 * 7 6 5 36 36 H 1.08999 * 109.47567 * 35.44793 * 7 6 5 37 37 H 1.08998 * 109.47446 * 155.45607 * 7 6 5 38 38 H 0.97005 * 119.99659 * 328.71544 * 9 8 3 39 39 H 1.08005 * 119.99581 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.00014 * 180.02562 * 14 13 12 41 41 H 1.07998 * 120.00436 * 179.75125 * 16 15 14 42 42 H 1.08001 * 120.00601 * 180.25583 * 17 16 15 43 43 H 1.08004 * 122.45786 * 179.97438 * 21 20 19 44 44 H 1.07999 * 122.64581 * 0.02562 * 22 18 15 45 45 H 1.09001 * 109.46808 * 239.69353 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1909 2.1954 -1.1267 5 6 2.6474 3.3562 -0.7317 6 6 2.7784 3.3296 0.6592 7 6 3.2710 4.4598 1.5258 8 6 2.3814 2.1015 1.0926 9 7 2.3578 1.6619 2.4150 10 6 3.2585 2.1351 3.2987 11 8 4.1587 2.8602 2.9202 12 6 3.1528 1.7739 4.7250 13 6 4.0871 2.2654 5.6421 14 6 3.9893 1.9304 6.9623 15 6 2.9553 1.0956 7.3971 16 6 2.0244 0.5993 6.4793 17 6 2.1189 0.9384 5.1599 18 6 2.8501 0.7333 8.8236 19 16 3.9450 1.2697 10.0914 20 6 3.0368 0.3703 11.2991 21 6 2.0076 -0.2559 10.7175 22 6 1.8984 -0.0614 9.3581 23 6 3.3642 0.3185 12.7693 24 8 2.2642 0.8354 13.5208 25 14 4.8822 1.3454 13.1038 26 1 4.6263 2.7522 12.7029 27 1 5.2053 1.2939 14.5523 28 1 6.0253 0.8082 12.3228 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.8825 4.1934 -1.3722 35 1 4.3605 4.4442 1.5585 36 1 2.9336 5.4095 1.1109 37 1 2.8756 4.3430 2.5348 38 1 1.6930 1.0151 2.6992 39 1 4.8865 2.9092 5.3061 40 1 4.7106 2.3104 7.6707 41 1 1.2282 -0.0487 6.8145 42 1 1.3975 0.5585 4.4516 43 1 1.3137 -0.8695 11.2728 44 1 1.1140 -0.5098 8.7665 45 1 3.5520 -0.7141 13.0635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001453039558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:55 Heat of formation + Delta-G solvation = 25.032290 kcal Electronic energy + Delta-G solvation = -29402.855949 eV Core-core repulsion = 25285.154963 eV Total energy + Delta-G solvation = -4117.700986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.70812 -41.17808 -39.80228 -38.39306 -36.27603 -35.46881 -34.35241 -32.87283 -32.22051 -32.02070 -30.56875 -29.21953 -27.27435 -26.48829 -24.58138 -24.42739 -23.92600 -22.92167 -22.39642 -21.84865 -20.49147 -19.77772 -19.32774 -18.34205 -18.03248 -17.07822 -16.83632 -16.49776 -16.17925 -15.97823 -15.81279 -15.52529 -15.45682 -15.08879 -14.92577 -14.64107 -14.54749 -14.36480 -14.15049 -13.99602 -13.79614 -13.68419 -13.20788 -13.08382 -13.04354 -12.94883 -12.92154 -12.81590 -12.52156 -12.26425 -12.13538 -12.01888 -11.94807 -11.83727 -11.53865 -11.43117 -10.98709 -10.50148 -10.14784 -9.95273 -9.43057 -9.06982 -8.81445 -8.50718 -7.88116 -0.76538 0.35986 0.38826 0.58698 0.75529 0.99780 1.10217 1.30925 1.41698 1.54297 1.61456 1.85593 2.02724 2.10578 2.42855 2.86383 3.38615 3.50928 3.65430 3.74543 3.88067 4.04088 4.07154 4.24077 4.27726 4.30788 4.31938 4.39934 4.45529 4.58204 4.64972 4.68055 4.72152 4.80583 4.85918 4.91489 4.96955 4.99647 5.12871 5.17635 5.19406 5.20868 5.24272 5.29646 5.33661 5.44187 5.68443 5.71546 5.72108 5.77197 5.95626 6.14098 6.70116 6.92382 7.56990 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.001858 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.871094 B =15069.892814 C =16059.118369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.382 5.382 4 N -0.309 5.309 5 C 0.058 3.942 6 C -0.253 4.253 7 C -0.044 4.044 8 C 0.296 3.704 9 N -0.636 5.636 10 C 0.566 3.434 11 O -0.523 6.523 12 C -0.152 4.152 13 C -0.047 4.047 14 C -0.139 4.139 15 C 0.028 3.972 16 C -0.113 4.113 17 C -0.058 4.058 18 C -0.185 4.185 19 S 0.053 5.947 20 C -0.152 4.152 21 C -0.172 4.172 22 C -0.088 4.088 23 C 0.009 3.991 24 O -0.928 6.928 25 Si 0.888 3.112 26 H -0.273 1.273 27 H -0.267 1.267 28 H -0.239 1.239 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.208 0.792 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.426 0.574 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.126 0.874 44 H 0.179 0.821 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -2.360 -31.609 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.171 5.171 4 N -0.131 5.131 5 C -0.128 4.128 6 C -0.267 4.267 7 C -0.102 4.102 8 C 0.077 3.923 9 N -0.287 5.287 10 C 0.356 3.644 11 O -0.398 6.398 12 C -0.155 4.155 13 C -0.066 4.066 14 C -0.157 4.157 15 C 0.025 3.975 16 C -0.133 4.133 17 C -0.077 4.077 18 C -0.301 4.301 19 S 0.318 5.682 20 C -0.269 4.269 21 C -0.200 4.200 22 C -0.119 4.119 23 C -0.111 4.111 24 O -0.878 6.878 25 Si 0.714 3.286 26 H -0.198 1.198 27 H -0.192 1.192 28 H -0.164 1.164 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.225 0.775 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.266 0.734 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.177 0.823 42 H 0.186 0.814 43 H 0.144 0.856 44 H 0.196 0.804 45 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -0.606 -1.212 -32.427 32.455 hybrid contribution -1.413 -0.743 1.616 2.271 sum -2.018 -1.955 -30.811 30.939 Atomic orbital electron populations 1.22173 0.92992 1.04531 1.02573 1.22042 0.96286 0.76285 1.05805 1.49112 1.53348 1.12678 1.01921 1.77352 1.24742 1.03905 1.07098 1.23988 0.97965 0.96590 0.94220 1.19940 1.15659 0.95827 0.95254 1.20019 1.00148 0.93728 0.96280 1.17772 1.02210 0.91147 0.81201 1.42480 1.34747 1.46666 1.04820 1.18334 0.81040 0.79328 0.85682 1.90911 1.33492 1.35674 1.79709 1.19664 1.00128 1.04486 0.91258 1.20866 0.97518 0.96678 0.91530 1.20992 0.98788 0.99571 0.96395 1.18476 0.95177 0.94996 0.88813 1.21144 0.99089 1.00804 0.92253 1.21223 0.95947 0.94380 0.96131 1.22963 1.02612 1.08527 0.96006 1.83750 1.32749 1.52363 0.99386 1.26661 0.99441 0.99016 1.01829 1.20045 0.99572 1.05227 0.95134 1.20511 0.99461 0.98478 0.93455 1.22930 1.04528 0.97115 0.86500 1.94906 1.42341 1.82841 1.67691 0.86811 0.78330 0.82112 0.81339 1.19834 1.19176 1.16370 0.92043 0.92983 0.87930 0.88005 0.87162 0.77545 0.92369 0.91925 0.93858 0.73361 0.84314 0.85884 0.82322 0.81401 0.85616 0.80386 0.98901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 10.24 71.98 0.74 -0.25 16 2 C 0.12 0.99 7.11 86.38 0.61 1.60 16 3 N -0.38 -6.42 3.64 -344.59 -1.25 -7.67 16 4 N -0.31 -6.33 12.56 -57.12 -0.72 -7.04 16 5 C 0.06 1.09 11.94 85.20 1.02 2.10 16 6 C -0.25 -5.31 5.79 -19.99 -0.12 -5.43 16 7 C -0.04 -0.92 8.25 71.23 0.59 -0.33 16 8 C 0.30 5.52 7.38 131.19 0.97 6.49 16 9 N -0.64 -9.05 5.15 -311.06 -1.60 -10.66 16 10 C 0.57 10.92 6.72 86.69 0.58 11.51 16 11 O -0.52 -13.39 11.51 -4.10 -0.05 -13.43 16 12 C -0.15 -2.75 5.88 -20.05 -0.12 -2.87 16 13 C -0.05 -1.03 9.53 22.26 0.21 -0.82 16 14 C -0.14 -3.49 9.54 22.26 0.21 -3.27 16 15 C 0.03 0.71 5.88 -20.05 -0.12 0.59 16 16 C -0.11 -1.99 9.48 22.26 0.21 -1.78 16 17 C -0.06 -0.77 9.48 22.27 0.21 -0.55 16 18 C -0.18 -6.21 6.37 23.99 0.15 -6.05 16 19 S 0.05 2.19 19.46 -56.49 -1.10 1.09 16 20 C -0.15 -7.76 5.76 24.67 0.14 -7.62 16 21 C -0.17 -7.72 10.00 21.14 0.21 -7.51 16 22 C -0.09 -2.98 9.64 21.41 0.21 -2.77 16 23 C 0.01 0.51 3.05 71.24 0.22 0.73 16 24 O -0.93 -69.62 17.99 -148.98 -2.68 -72.30 16 25 Si 0.89 44.82 26.49 68.60 1.82 46.63 16 26 H -0.27 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.24 -10.16 7.11 99.48 0.71 -9.45 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 0.45 7.91 -2.39 -0.02 0.43 16 34 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.06 1.38 7.15 -2.38 -0.02 1.36 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 0.99 6.10 -2.39 -0.01 0.97 16 38 H 0.43 2.84 6.75 -92.70 -0.63 2.22 16 39 H 0.14 2.97 7.64 -2.91 -0.02 2.95 16 40 H 0.12 3.23 7.26 -2.91 -0.02 3.21 16 41 H 0.16 2.01 6.74 -2.91 -0.02 1.99 16 42 H 0.17 0.64 6.40 -2.91 -0.02 0.62 16 43 H 0.13 5.77 8.06 -2.91 -0.02 5.74 16 44 H 0.18 4.18 6.88 -2.91 -0.02 4.16 16 45 H -0.01 -0.35 7.96 -2.39 -0.02 -0.36 16 Total: -1.00 -88.20 387.78 1.53 -86.67 By element: Atomic # 1 Polarization: -8.23 SS G_CDS: 1.18 Total: -7.05 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.93 Total: -16.24 kcal Atomic # 7 Polarization: -21.80 SS G_CDS: -3.57 Total: -25.37 kcal Atomic # 8 Polarization: -83.00 SS G_CDS: -2.73 Total: -85.73 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.82 Total: 46.63 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.10 Total: 1.09 kcal Total: -88.20 1.53 -86.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453039558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.702 kcal (2) G-P(sol) polarization free energy of solvation -88.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds