Wall clock time and date at job start Mon Mar 23 2020 11:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46802 * 2 1 4 4 N 1.40075 * 126.08992 * 90.02933 * 3 2 1 5 5 C 1.30835 * 108.41209 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.77658 * 180.02562 * 5 4 3 7 7 C 1.39725 * 108.44230 * 0.02562 * 5 4 3 8 8 C 1.35805 * 126.09680 * 270.02602 * 3 2 1 9 9 N 1.39371 * 126.26582 * 0.04180 * 8 3 2 10 10 C 1.34780 * 120.00025 * 179.97438 * 9 8 3 11 11 O 1.21608 * 119.99968 * 359.97438 * 10 9 8 12 12 C 1.47511 * 119.99569 * 179.97438 * 10 9 8 13 13 C 1.39855 * 120.00926 * 359.72490 * 12 10 9 14 14 C 1.36552 * 119.99760 * 179.76025 * 13 12 10 15 15 C 1.39829 * 120.00476 * 0.49221 * 14 13 12 16 16 C 1.39822 * 120.00410 * 359.78226 * 15 14 13 17 17 C 1.36559 * 120.00322 * 359.96099 * 16 15 14 18 18 C 1.47556 * 119.99666 * 179.75999 * 15 14 13 19 19 S 1.75891 * 125.27524 * 179.71622 * 18 15 14 20 20 C 1.75866 * 91.00281 * 179.97438 * 19 18 15 21 21 C 1.33769 * 109.76243 * 0.34062 * 20 19 18 22 22 C 1.35009 * 125.27634 * 0.02562 * 18 15 14 23 23 C 1.50703 * 125.11643 * 180.02562 * 20 19 18 24 24 O 1.42903 * 109.46934 * 120.30217 * 23 20 19 25 25 Si 1.86293 * 109.47302 * 0.30280 * 23 20 19 26 26 H 1.48505 * 109.47207 * 59.99903 * 25 23 20 27 27 H 1.48502 * 109.47302 * 179.97438 * 25 23 20 28 28 H 1.48498 * 109.47311 * 300.00353 * 25 23 20 29 29 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46810 * 299.99297 * 1 2 3 31 31 H 1.08992 * 109.47398 * 59.99513 * 1 2 3 32 32 H 1.09007 * 109.46981 * 240.00486 * 2 1 3 33 33 H 1.08992 * 109.47398 * 120.00487 * 2 1 3 34 34 H 1.09002 * 109.47068 * 90.02527 * 6 5 4 35 35 H 1.08996 * 109.46608 * 210.02475 * 6 5 4 36 36 H 1.08993 * 109.47186 * 330.02333 * 6 5 4 37 37 H 1.08004 * 126.06916 * 180.02562 * 7 5 4 38 38 H 0.96997 * 119.99925 * 359.97438 * 9 8 3 39 39 H 1.08001 * 119.99769 * 0.02627 * 13 12 10 40 40 H 1.08002 * 119.99765 * 180.27907 * 14 13 12 41 41 H 1.08000 * 119.99574 * 179.97438 * 16 15 14 42 42 H 1.08007 * 119.99852 * 180.02562 * 17 16 15 43 43 H 1.07994 * 122.46145 * 179.75255 * 21 20 19 44 44 H 1.07998 * 122.64843 * 359.97438 * 22 18 15 45 45 H 1.09001 * 109.46861 * 240.29820 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2938 2.1590 1.1319 5 6 2.7096 3.3342 0.7346 6 6 3.1143 4.4753 1.6320 7 6 2.7149 3.3521 -0.6625 8 6 2.2845 2.1358 -1.0973 9 7 2.1424 1.7381 -2.4255 10 6 2.4442 2.5946 -3.4214 11 8 2.8401 3.7146 -3.1611 12 6 2.2944 2.1735 -4.8272 13 6 1.8446 0.8835 -5.1267 14 6 1.7012 0.4955 -6.4281 15 6 2.0140 1.3843 -7.4612 16 6 2.4691 2.6721 -7.1620 17 6 2.6076 3.0621 -5.8606 18 6 1.8641 0.9631 -8.8674 19 16 2.2092 1.9660 -10.2706 20 6 1.7531 0.6591 -11.3554 21 6 1.3760 -0.4088 -10.6436 22 6 1.4351 -0.2500 -9.2765 23 6 1.7763 0.7338 -12.8604 24 8 2.6595 -0.2657 -13.3733 25 14 2.3705 2.4182 -13.3896 26 1 3.7391 2.6489 -12.8614 27 1 2.3940 2.4916 -14.8726 28 1 1.4528 3.4569 -12.8565 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.1807 4.4077 1.8473 35 1 2.9034 5.4215 1.1338 36 1 2.5514 4.4219 2.5638 37 1 3.0091 4.1830 -1.2867 38 1 1.8263 0.8449 -2.6332 39 1 1.6065 0.1958 -4.3287 40 1 1.3496 -0.4991 -6.6594 41 1 2.7110 3.3583 -7.9601 42 1 2.9588 4.0570 -5.6295 43 1 1.0500 -1.3284 -11.1067 44 1 1.1592 -1.0336 -8.5864 45 1 0.7717 0.5644 -13.2481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557792597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:59 Heat of formation + Delta-G solvation = 40.730908 kcal Electronic energy + Delta-G solvation = -29002.412604 eV Core-core repulsion = 24885.392360 eV Total energy + Delta-G solvation = -4117.020243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85052 -40.31452 -38.78118 -36.91870 -35.71751 -34.76616 -32.82599 -31.58652 -31.23307 -30.93262 -29.23477 -27.85606 -27.53691 -25.19942 -23.80667 -23.10209 -22.93223 -21.73611 -21.08093 -20.60167 -20.09446 -18.47936 -18.10549 -17.26361 -16.71337 -16.13601 -15.92956 -15.36469 -15.29581 -15.02213 -14.82559 -14.60271 -14.30226 -13.98145 -13.81183 -13.67276 -13.54918 -13.36536 -13.15763 -13.08234 -12.77528 -12.67066 -12.49981 -12.38925 -12.10795 -11.87813 -11.82760 -11.52733 -11.30600 -11.16224 -11.03175 -10.82694 -10.59626 -10.19682 -10.05051 -9.91577 -9.64202 -9.29018 -9.25183 -9.09065 -8.36505 -7.83282 -7.33353 -6.09014 -5.50568 0.30698 1.27709 1.45001 1.77367 1.89023 2.18708 2.51556 2.66771 2.70259 2.85242 3.35282 3.41009 3.46787 3.53837 3.88246 4.01423 4.19425 4.43279 4.45124 4.51219 4.54027 4.65462 4.72000 4.81399 4.88483 5.01972 5.17120 5.17242 5.26243 5.31913 5.38533 5.50504 5.53999 5.56723 5.57933 5.67877 5.79125 5.87204 5.89995 6.05350 6.12240 6.19630 6.47398 6.51837 6.53548 6.66882 6.68953 6.89518 6.93502 7.26549 7.32717 7.41617 7.51900 7.68274 9.77335 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.001757 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.474966 B =15928.861818 C =16991.430263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.127 3.873 3 N -0.390 5.390 4 N -0.292 5.292 5 C 0.083 3.917 6 C -0.071 4.071 7 C -0.276 4.276 8 C 0.310 3.690 9 N -0.649 5.649 10 C 0.574 3.426 11 O -0.504 6.504 12 C -0.166 4.166 13 C -0.073 4.073 14 C -0.129 4.129 15 C 0.065 3.935 16 C -0.136 4.136 17 C -0.037 4.037 18 C -0.225 4.225 19 S 0.055 5.945 20 C -0.079 4.079 21 C -0.181 4.181 22 C -0.076 4.076 23 C 0.053 3.947 24 O -0.843 6.843 25 Si 0.836 3.164 26 H -0.263 1.263 27 H -0.260 1.260 28 H -0.284 1.284 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.173 0.827 38 H 0.409 0.591 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 2.016 27.871 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.006 3.994 3 N -0.179 5.179 4 N -0.115 5.115 5 C -0.083 4.083 6 C -0.130 4.130 7 C -0.308 4.308 8 C 0.092 3.908 9 N -0.297 5.297 10 C 0.364 3.636 11 O -0.378 6.378 12 C -0.170 4.170 13 C -0.091 4.091 14 C -0.149 4.149 15 C 0.063 3.937 16 C -0.155 4.155 17 C -0.056 4.056 18 C -0.341 4.341 19 S 0.319 5.681 20 C -0.197 4.197 21 C -0.207 4.207 22 C -0.108 4.108 23 C -0.069 4.069 24 O -0.790 6.790 25 Si 0.664 3.336 26 H -0.188 1.188 27 H -0.185 1.185 28 H -0.212 1.212 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.190 0.810 38 H 0.246 0.754 39 H 0.138 0.862 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.352 4.030 28.357 28.838 hybrid contribution -0.566 -1.804 -0.595 1.983 sum -3.919 2.225 27.762 28.126 Atomic orbital electron populations 1.22227 0.94147 1.03256 1.03443 1.21634 0.95326 0.78060 1.04372 1.48777 1.54990 1.12103 1.01999 1.77360 1.24605 1.04220 1.05340 1.22235 0.97884 0.94121 0.94061 1.20177 1.01741 0.93476 0.97593 1.21561 1.16504 0.98465 0.94221 1.18105 1.00455 0.92143 0.80146 1.42825 1.66622 1.18088 1.02179 1.18265 0.76522 0.84117 0.84684 1.90727 1.43800 1.19672 1.83630 1.19479 1.10071 0.96224 0.91209 1.20796 0.97253 0.94304 0.96786 1.20838 1.02403 1.00229 0.91390 1.18459 0.92055 0.92799 0.90436 1.21022 1.01825 0.95950 0.96684 1.20845 0.94399 0.99201 0.91107 1.22584 1.17121 0.99665 0.94701 1.84056 1.67779 1.19389 0.96892 1.27461 0.94941 0.93208 1.04120 1.19801 1.08576 1.00532 0.91838 1.20337 0.98886 0.95573 0.96047 1.22450 0.97091 1.03629 0.83700 1.95021 1.59246 1.46810 1.77919 0.87705 0.81890 0.81169 0.82812 1.18751 1.18501 1.21206 0.90232 0.91301 0.92143 0.89644 0.88186 0.90471 0.90250 0.91006 0.80969 0.75403 0.86153 0.84904 0.84983 0.84397 0.84389 0.85177 0.97349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.13 0.76 6.99 -4.04 -0.03 0.73 16 3 N -0.39 -3.93 3.64 -60.27 -0.22 -4.15 16 4 N -0.29 -3.45 12.56 33.64 0.42 -3.03 16 5 C 0.08 0.94 7.20 -82.46 -0.59 0.35 16 6 C -0.07 -0.54 10.44 36.01 0.38 -0.16 16 7 C -0.28 -3.43 9.58 -39.78 -0.38 -3.81 16 8 C 0.31 3.48 7.68 -152.75 -1.17 2.31 16 9 N -0.65 -6.10 5.36 -12.29 -0.07 -6.17 16 10 C 0.57 6.71 7.72 -12.48 -0.10 6.62 16 11 O -0.50 -7.23 13.46 5.27 0.07 -7.16 16 12 C -0.17 -1.88 5.88 -104.91 -0.62 -2.49 16 13 C -0.07 -0.69 9.48 -39.59 -0.38 -1.07 16 14 C -0.13 -1.48 9.48 -39.60 -0.38 -1.86 16 15 C 0.06 0.94 5.88 -104.91 -0.62 0.33 16 16 C -0.14 -1.87 9.54 -39.60 -0.38 -2.25 16 17 C -0.04 -0.45 9.53 -39.58 -0.38 -0.83 16 18 C -0.23 -4.01 6.37 -36.93 -0.24 -4.24 16 19 S 0.05 1.13 19.46 -107.50 -2.09 -0.96 16 20 C -0.08 -1.94 5.76 -35.87 -0.21 -2.15 16 21 C -0.18 -3.98 10.00 -41.32 -0.41 -4.39 16 22 C -0.08 -1.35 9.64 -40.90 -0.39 -1.75 16 23 C 0.05 1.51 3.05 36.01 0.11 1.62 16 24 O -0.84 -29.64 17.99 -35.23 -0.63 -30.27 16 25 Si 0.84 20.89 26.49 -169.99 -4.50 16.39 16 26 H -0.26 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.26 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.32 7.52 -51.93 -0.39 -0.07 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.17 2.31 5.83 -52.48 -0.31 2.00 16 38 H 0.41 2.52 6.00 -40.82 -0.25 2.28 16 39 H 0.12 0.69 6.38 -52.49 -0.34 0.35 16 40 H 0.13 1.29 6.74 -52.49 -0.35 0.94 16 41 H 0.13 1.80 7.26 -52.49 -0.38 1.42 16 42 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 43 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 44 H 0.13 1.82 6.88 -52.49 -0.36 1.45 16 45 H 0.01 0.26 7.96 -51.93 -0.41 -0.15 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -37.45 392.00 -11.87 -49.33 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -5.36 Total: -6.32 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -5.40 Total: -13.55 kcal Atomic # 7 Polarization: -13.49 SS G_CDS: 0.14 Total: -13.35 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.56 Total: -37.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.50 Total: 16.39 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.09 Total: -0.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.45 -11.87 -49.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557792597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.059 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds