Wall clock time and date at job start Mon Mar 23 2020 11:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46802 * 2 1 4 4 N 1.40075 * 126.08992 * 90.02933 * 3 2 1 5 5 C 1.30835 * 108.41209 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.77658 * 180.02562 * 5 4 3 7 7 C 1.39725 * 108.44230 * 0.02562 * 5 4 3 8 8 C 1.35805 * 126.09680 * 270.02602 * 3 2 1 9 9 N 1.39371 * 126.26582 * 0.04180 * 8 3 2 10 10 C 1.34780 * 120.00025 * 179.97438 * 9 8 3 11 11 O 1.21608 * 119.99968 * 359.97438 * 10 9 8 12 12 C 1.47511 * 119.99569 * 179.97438 * 10 9 8 13 13 C 1.39855 * 120.00926 * 359.72490 * 12 10 9 14 14 C 1.36552 * 119.99760 * 179.76025 * 13 12 10 15 15 C 1.39829 * 120.00476 * 0.49221 * 14 13 12 16 16 C 1.39822 * 120.00410 * 359.78226 * 15 14 13 17 17 C 1.36559 * 120.00322 * 359.96099 * 16 15 14 18 18 C 1.47556 * 119.99666 * 179.75999 * 15 14 13 19 19 S 1.75891 * 125.27524 * 179.71622 * 18 15 14 20 20 C 1.75866 * 91.00281 * 179.97438 * 19 18 15 21 21 C 1.33769 * 109.76243 * 0.34062 * 20 19 18 22 22 C 1.35009 * 125.27634 * 0.02562 * 18 15 14 23 23 C 1.50703 * 125.11643 * 180.02562 * 20 19 18 24 24 O 1.42903 * 109.46934 * 120.30217 * 23 20 19 25 25 Si 1.86293 * 109.47302 * 0.30280 * 23 20 19 26 26 H 1.48505 * 109.47207 * 59.99903 * 25 23 20 27 27 H 1.48502 * 109.47302 * 179.97438 * 25 23 20 28 28 H 1.48498 * 109.47311 * 300.00353 * 25 23 20 29 29 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46810 * 299.99297 * 1 2 3 31 31 H 1.08992 * 109.47398 * 59.99513 * 1 2 3 32 32 H 1.09007 * 109.46981 * 240.00486 * 2 1 3 33 33 H 1.08992 * 109.47398 * 120.00487 * 2 1 3 34 34 H 1.09002 * 109.47068 * 90.02527 * 6 5 4 35 35 H 1.08996 * 109.46608 * 210.02475 * 6 5 4 36 36 H 1.08993 * 109.47186 * 330.02333 * 6 5 4 37 37 H 1.08004 * 126.06916 * 180.02562 * 7 5 4 38 38 H 0.96997 * 119.99925 * 359.97438 * 9 8 3 39 39 H 1.08001 * 119.99769 * 0.02627 * 13 12 10 40 40 H 1.08002 * 119.99765 * 180.27907 * 14 13 12 41 41 H 1.08000 * 119.99574 * 179.97438 * 16 15 14 42 42 H 1.08007 * 119.99852 * 180.02562 * 17 16 15 43 43 H 1.07994 * 122.46145 * 179.75255 * 21 20 19 44 44 H 1.07998 * 122.64843 * 359.97438 * 22 18 15 45 45 H 1.09001 * 109.46861 * 240.29820 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2938 2.1590 1.1319 5 6 2.7096 3.3342 0.7346 6 6 3.1143 4.4753 1.6320 7 6 2.7149 3.3521 -0.6625 8 6 2.2845 2.1358 -1.0973 9 7 2.1424 1.7381 -2.4255 10 6 2.4442 2.5946 -3.4214 11 8 2.8401 3.7146 -3.1611 12 6 2.2944 2.1735 -4.8272 13 6 1.8446 0.8835 -5.1267 14 6 1.7012 0.4955 -6.4281 15 6 2.0140 1.3843 -7.4612 16 6 2.4691 2.6721 -7.1620 17 6 2.6076 3.0621 -5.8606 18 6 1.8641 0.9631 -8.8674 19 16 2.2092 1.9660 -10.2706 20 6 1.7531 0.6591 -11.3554 21 6 1.3760 -0.4088 -10.6436 22 6 1.4351 -0.2500 -9.2765 23 6 1.7763 0.7338 -12.8604 24 8 2.6595 -0.2657 -13.3733 25 14 2.3705 2.4182 -13.3896 26 1 3.7391 2.6489 -12.8614 27 1 2.3940 2.4916 -14.8726 28 1 1.4528 3.4569 -12.8565 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.1807 4.4077 1.8473 35 1 2.9034 5.4215 1.1338 36 1 2.5514 4.4219 2.5638 37 1 3.0091 4.1830 -1.2867 38 1 1.8263 0.8449 -2.6332 39 1 1.6065 0.1958 -4.3287 40 1 1.3496 -0.4991 -6.6594 41 1 2.7110 3.3583 -7.9601 42 1 2.9588 4.0570 -5.6295 43 1 1.0500 -1.3284 -11.1067 44 1 1.1592 -1.0336 -8.5864 45 1 0.7717 0.5644 -13.2481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557792597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:58 Heat of formation + Delta-G solvation = 15.994041 kcal Electronic energy + Delta-G solvation = -29003.485275 eV Core-core repulsion = 24885.392360 eV Total energy + Delta-G solvation = -4118.092914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.66173 -41.22983 -39.82723 -38.40126 -36.51323 -35.43809 -34.35290 -32.78685 -32.25068 -31.90044 -30.23478 -29.08865 -28.45640 -26.63068 -24.73559 -24.04741 -23.93251 -22.96743 -22.45235 -21.43563 -20.97730 -19.76662 -19.01960 -18.13529 -18.05209 -17.04389 -16.85502 -16.65995 -16.15688 -15.96326 -15.81972 -15.54602 -15.52374 -15.20635 -14.92499 -14.67446 -14.53297 -14.41016 -14.13662 -14.11594 -13.77944 -13.74790 -13.29816 -13.17379 -13.12697 -12.98877 -12.95541 -12.87250 -12.53347 -12.27047 -12.14760 -12.02576 -11.98284 -11.84142 -11.63715 -11.43196 -11.14118 -10.55579 -10.16620 -9.82043 -9.43476 -9.24896 -8.83032 -8.51383 -7.88572 -0.79455 0.33000 0.37098 0.58190 0.78342 0.99055 1.02005 1.30750 1.41366 1.54016 1.58101 1.85856 1.97355 2.09125 2.42617 2.84139 3.31257 3.46737 3.62296 3.71642 3.86023 3.96387 4.04628 4.17076 4.22547 4.27513 4.34287 4.44334 4.45462 4.59222 4.66342 4.69627 4.74687 4.78483 4.80722 4.83758 4.87738 4.95698 5.03895 5.11491 5.14591 5.17799 5.19635 5.23452 5.27950 5.42683 5.67873 5.71463 5.74821 5.75355 5.92661 6.17154 6.71271 6.84240 7.56572 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.001757 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.474966 B =15928.861818 C =16991.430263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.385 5.385 4 N -0.314 5.314 5 C 0.075 3.925 6 C -0.071 4.071 7 C -0.304 4.304 8 C 0.307 3.693 9 N -0.630 5.630 10 C 0.574 3.426 11 O -0.534 6.534 12 C -0.154 4.154 13 C -0.057 4.057 14 C -0.113 4.113 15 C 0.030 3.970 16 C -0.139 4.139 17 C -0.046 4.046 18 C -0.186 4.186 19 S 0.053 5.947 20 C -0.151 4.151 21 C -0.172 4.172 22 C -0.087 4.087 23 C 0.009 3.991 24 O -0.928 6.928 25 Si 0.887 3.113 26 H -0.274 1.274 27 H -0.267 1.267 28 H -0.238 1.238 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.427 0.573 39 H 0.170 0.830 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.180 0.820 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 1.454 31.970 32.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.173 5.173 4 N -0.138 5.138 5 C -0.091 4.091 6 C -0.129 4.129 7 C -0.336 4.336 8 C 0.086 3.914 9 N -0.280 5.280 10 C 0.365 3.635 11 O -0.410 6.410 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.132 4.132 15 C 0.028 3.972 16 C -0.158 4.158 17 C -0.065 4.065 18 C -0.302 4.302 19 S 0.318 5.682 20 C -0.269 4.269 21 C -0.200 4.200 22 C -0.118 4.118 23 C -0.111 4.111 24 O -0.878 6.878 25 Si 0.714 3.286 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.163 1.163 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.175 0.825 38 H 0.267 0.733 39 H 0.188 0.812 40 H 0.179 0.821 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.144 0.856 44 H 0.197 0.803 45 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -4.276 3.457 32.472 32.934 hybrid contribution -0.360 -1.629 -1.490 2.236 sum -4.635 1.828 30.982 31.380 Atomic orbital electron populations 1.22192 0.93377 1.04603 1.02287 1.22089 0.95957 0.76178 1.06268 1.49089 1.54094 1.13067 1.01059 1.77311 1.25305 1.04704 1.06501 1.22688 0.97481 0.94782 0.94156 1.20283 1.02458 0.92736 0.97438 1.21595 1.18090 0.99020 0.94850 1.18120 1.00145 0.92168 0.80932 1.42574 1.65759 1.18541 1.01086 1.18337 0.76187 0.83906 0.85118 1.90742 1.45087 1.21147 1.84022 1.19602 1.08734 0.96844 0.90561 1.21224 0.94981 0.93888 0.97424 1.21156 1.00459 1.00606 0.91026 1.18489 0.95458 0.94115 0.89173 1.20996 1.01849 0.95808 0.97099 1.20879 0.94907 0.99805 0.90918 1.22956 1.13606 0.98426 0.95237 1.83761 1.68135 1.18555 0.97788 1.26667 1.00683 0.96475 1.03115 1.20047 1.06704 0.99231 0.93983 1.20520 0.99663 0.97029 0.94559 1.22927 0.95801 1.05731 0.86599 1.94907 1.61341 1.50797 1.80778 0.86817 0.81323 0.78768 0.81721 1.19883 1.19155 1.16326 0.87596 0.93259 0.92466 0.86608 0.87525 0.89425 0.89429 0.90195 0.82496 0.73275 0.81229 0.82117 0.85785 0.84304 0.85588 0.80290 0.98873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.24 71.98 0.74 -0.37 16 2 C 0.11 0.93 6.99 86.38 0.60 1.54 16 3 N -0.38 -6.74 3.64 -344.59 -1.25 -7.99 16 4 N -0.31 -6.95 12.56 -47.47 -0.60 -7.55 16 5 C 0.07 1.61 7.20 43.07 0.31 1.92 16 6 C -0.07 -1.00 10.44 71.24 0.74 -0.25 16 7 C -0.30 -7.25 9.58 22.14 0.21 -7.03 16 8 C 0.31 6.10 7.68 131.19 1.01 7.11 16 9 N -0.63 -9.34 5.36 -311.06 -1.67 -11.00 16 10 C 0.57 11.59 7.72 86.69 0.67 12.26 16 11 O -0.53 -14.51 13.46 -4.05 -0.05 -14.57 16 12 C -0.15 -2.83 5.88 -20.05 -0.12 -2.95 16 13 C -0.06 -0.73 9.48 22.27 0.21 -0.52 16 14 C -0.11 -1.94 9.48 22.26 0.21 -1.73 16 15 C 0.03 0.76 5.88 -20.05 -0.12 0.65 16 16 C -0.14 -3.48 9.54 22.26 0.21 -3.27 16 17 C -0.05 -1.02 9.53 22.27 0.21 -0.81 16 18 C -0.19 -6.20 6.37 23.99 0.15 -6.05 16 19 S 0.05 2.18 19.46 -56.49 -1.10 1.08 16 20 C -0.15 -7.74 5.76 24.67 0.14 -7.60 16 21 C -0.17 -7.68 10.00 21.14 0.21 -7.47 16 22 C -0.09 -2.90 9.64 21.41 0.21 -2.70 16 23 C 0.01 0.52 3.05 71.24 0.22 0.74 16 24 O -0.93 -69.62 17.99 -148.98 -2.68 -72.30 16 25 Si 0.89 44.76 26.49 68.60 1.82 46.58 16 26 H -0.27 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 28 H -0.24 -10.13 7.11 99.48 0.71 -9.42 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.12 0.23 7.52 -2.38 -0.02 0.22 16 33 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.16 4.20 5.83 -2.91 -0.02 4.18 16 38 H 0.43 2.79 6.00 -92.71 -0.56 2.24 16 39 H 0.17 0.54 6.38 -2.91 -0.02 0.52 16 40 H 0.16 1.94 6.74 -2.91 -0.02 1.92 16 41 H 0.12 3.25 7.26 -2.91 -0.02 3.23 16 42 H 0.14 3.02 7.64 -2.91 -0.02 3.00 16 43 H 0.13 5.75 8.06 -2.91 -0.02 5.73 16 44 H 0.18 4.12 6.88 -2.91 -0.02 4.10 16 45 H -0.01 -0.33 7.96 -2.39 -0.02 -0.35 16 Total: -1.00 -89.87 392.00 1.54 -88.33 By element: Atomic # 1 Polarization: -7.29 SS G_CDS: 1.25 Total: -6.04 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 5.82 Total: -16.54 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: -3.52 Total: -26.54 kcal Atomic # 8 Polarization: -84.13 SS G_CDS: -2.73 Total: -86.87 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.82 Total: 46.58 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.10 Total: 1.08 kcal Total: -89.87 1.54 -88.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557792597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.327 kcal (2) G-P(sol) polarization free energy of solvation -89.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds