Wall clock time and date at job start Mon Mar 23 2020 11:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40073 * 126.09665 * 2 1 4 4 C 1.30833 * 108.41382 * 180.25115 * 3 2 1 5 5 C 1.50699 * 125.78067 * 179.80261 * 4 3 2 6 6 C 1.39729 * 108.44250 * 359.76348 * 4 3 2 7 7 C 1.50702 * 126.07142 * 179.97438 * 6 4 3 8 8 C 1.35819 * 126.09307 * 179.83593 * 2 1 3 9 9 N 1.39369 * 126.26276 * 0.02562 * 8 2 1 10 10 C 1.34776 * 120.00338 * 330.70515 * 9 8 2 11 11 O 1.21617 * 119.99755 * 354.10990 * 10 9 8 12 12 C 1.47512 * 120.00564 * 174.10960 * 10 9 8 13 13 C 1.39852 * 120.00332 * 180.02562 * 12 10 9 14 14 C 1.36559 * 119.99348 * 180.02562 * 13 12 10 15 15 C 1.39827 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.39823 * 120.00274 * 0.25625 * 15 14 13 17 17 C 1.36552 * 120.00735 * 359.48242 * 16 15 14 18 18 C 1.47554 * 119.99754 * 179.97438 * 15 14 13 19 19 S 1.75892 * 125.27505 * 359.97208 * 18 15 14 20 20 C 1.75859 * 91.00370 * 180.02562 * 19 18 15 21 21 C 1.33774 * 109.76366 * 0.02562 * 20 19 18 22 22 C 1.35004 * 125.27773 * 180.02562 * 18 15 14 23 23 C 1.50701 * 125.12184 * 180.26724 * 20 19 18 24 24 O 1.42906 * 109.47402 * 119.69052 * 23 20 19 25 25 Si 1.86301 * 109.46988 * 359.69607 * 23 20 19 26 26 H 1.48503 * 109.47365 * 59.99580 * 25 23 20 27 27 H 1.48498 * 109.47547 * 180.02562 * 25 23 20 28 28 H 1.48506 * 109.46719 * 299.99740 * 25 23 20 29 29 H 1.09010 * 109.47058 * 272.21130 * 1 2 3 30 30 H 1.08995 * 109.47414 * 32.21427 * 1 2 3 31 31 H 1.08997 * 109.47304 * 152.21877 * 1 2 3 32 32 H 1.08996 * 109.46744 * 269.95687 * 5 4 3 33 33 H 1.09002 * 109.47293 * 29.95618 * 5 4 3 34 34 H 1.08992 * 109.47548 * 149.95739 * 5 4 3 35 35 H 1.09002 * 109.47286 * 270.02842 * 7 6 4 36 36 H 1.08999 * 109.46923 * 30.02318 * 7 6 4 37 37 H 1.09001 * 109.47104 * 150.02677 * 7 6 4 38 38 H 0.97000 * 120.00227 * 150.71011 * 9 8 2 39 39 H 1.07995 * 120.00271 * 0.04527 * 13 12 10 40 40 H 1.08000 * 119.99479 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.99610 * 179.74767 * 16 15 14 42 42 H 1.08001 * 120.00672 * 180.25707 * 17 16 15 43 43 H 1.07990 * 122.46144 * 179.97438 * 21 20 19 44 44 H 1.08004 * 122.65023 * 359.97438 * 22 18 15 45 45 H 1.08998 * 109.47467 * 239.69432 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2902 1.1318 0.0000 4 6 3.5367 0.7344 -0.0054 5 6 4.7475 1.6316 -0.0116 6 6 3.5552 -0.6627 -0.0036 7 6 4.7850 -1.5338 -0.0089 8 6 2.2650 -1.0975 0.0031 9 7 1.8426 -2.4256 0.0064 10 6 0.6681 -2.7579 0.5780 11 8 0.0281 -1.9198 1.1838 12 6 0.1588 -4.1380 0.4687 13 6 -1.0601 -4.4825 1.0614 14 6 -1.5312 -5.7603 0.9605 15 6 -0.7951 -6.7240 0.2644 16 6 0.4260 -6.3808 -0.3240 17 6 0.8947 -5.1018 -0.2279 18 6 -1.3039 -8.1048 0.1561 19 16 -2.8126 -8.6885 0.8467 20 6 -2.5145 -10.3016 0.2129 21 6 -1.3538 -10.3191 -0.4519 22 6 -0.6832 -9.1163 -0.4876 23 6 -3.4314 -11.4848 0.3875 24 8 -3.8542 -11.9531 -0.8948 25 14 -4.9204 -10.9748 1.3842 26 1 -5.6431 -9.8889 0.6743 27 1 -5.8237 -12.1408 1.5568 28 1 -4.4810 -10.4882 2.7167 29 1 -0.3634 0.0397 1.0270 30 1 -0.3634 0.8694 -0.5478 31 1 -0.3634 -0.9092 -0.4790 32 1 5.0351 1.8465 -1.0408 33 1 4.5117 2.5637 0.5020 34 1 5.5714 1.1336 0.4994 35 1 5.0764 -1.7448 -1.0378 36 1 5.5984 -1.0170 0.5003 37 1 4.5696 -2.4696 0.5069 38 1 2.3939 -3.1110 -0.4025 39 1 -1.6291 -3.7380 1.5984 40 1 -2.4727 -6.0263 1.4178 41 1 0.9964 -7.1262 -0.8582 42 1 1.8359 -4.8357 -0.6860 43 1 -0.9707 -11.2106 -0.9258 44 1 0.2644 -8.9923 -0.9907 45 1 -2.9010 -12.2818 0.9085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624733087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:02 Heat of formation + Delta-G solvation = 47.421641 kcal Electronic energy + Delta-G solvation = -29281.992699 eV Core-core repulsion = 25165.262588 eV Total energy + Delta-G solvation = -4116.730111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01790 -40.35078 -38.84371 -36.93988 -35.53222 -34.40762 -32.84193 -31.67705 -31.15864 -30.71694 -29.86687 -27.88313 -27.07602 -25.27269 -24.71975 -23.23658 -22.94900 -21.66060 -21.04033 -20.62317 -19.51984 -18.56699 -18.06018 -17.69333 -16.59820 -16.26657 -15.74444 -15.56670 -15.28531 -15.22950 -14.66573 -14.40501 -13.88994 -13.83556 -13.73098 -13.63313 -13.40715 -13.28224 -13.25547 -13.14904 -12.82146 -12.68462 -12.54833 -12.27069 -12.20189 -12.08767 -11.84683 -11.53620 -11.31576 -11.11218 -11.04845 -10.69451 -10.61075 -10.25381 -10.06049 -9.92637 -9.65354 -9.30330 -9.27220 -9.01872 -8.30703 -7.84445 -7.34841 -6.09948 -5.51552 0.26696 1.25918 1.41861 1.84841 1.98749 2.17550 2.35008 2.58539 2.68646 2.75670 3.34225 3.39625 3.45437 3.51920 3.85956 4.13539 4.29538 4.42195 4.51599 4.69913 4.70968 4.79363 4.83607 4.99042 5.14161 5.15472 5.15948 5.25869 5.27380 5.37455 5.42176 5.49112 5.53917 5.55701 5.62225 5.70852 5.78018 5.82586 5.85930 6.01942 6.09658 6.16365 6.42722 6.46092 6.50377 6.64933 6.70168 6.83495 6.88564 7.25503 7.31728 7.40751 7.50461 7.59462 9.76303 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.001756 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.871732 B =15944.235479 C =16715.455185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.364 5.364 3 N -0.289 5.289 4 C 0.087 3.913 5 C -0.071 4.071 6 C -0.265 4.265 7 C -0.069 4.069 8 C 0.318 3.682 9 N -0.647 5.647 10 C 0.559 3.441 11 O -0.518 6.518 12 C -0.171 4.171 13 C -0.038 4.038 14 C -0.138 4.138 15 C 0.066 3.934 16 C -0.129 4.129 17 C -0.070 4.070 18 C -0.226 4.226 19 S 0.054 5.946 20 C -0.078 4.078 21 C -0.181 4.181 22 C -0.075 4.075 23 C 0.054 3.946 24 O -0.843 6.843 25 Si 0.836 3.164 26 H -0.263 1.263 27 H -0.260 1.260 28 H -0.284 1.284 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.424 0.576 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.898 21.802 1.455 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.149 5.149 3 N -0.114 5.114 4 C -0.079 4.079 5 C -0.130 4.130 6 C -0.279 4.279 7 C -0.127 4.127 8 C 0.097 3.903 9 N -0.298 5.298 10 C 0.351 3.649 11 O -0.394 6.394 12 C -0.174 4.174 13 C -0.056 4.056 14 C -0.156 4.156 15 C 0.064 3.936 16 C -0.149 4.149 17 C -0.089 4.089 18 C -0.342 4.342 19 S 0.318 5.682 20 C -0.197 4.197 21 C -0.207 4.207 22 C -0.107 4.107 23 C -0.069 4.069 24 O -0.790 6.790 25 Si 0.664 3.336 26 H -0.188 1.188 27 H -0.185 1.185 28 H -0.212 1.212 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.264 0.736 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 14.429 24.113 2.951 28.255 hybrid contribution 1.741 -1.758 -1.117 2.715 sum 16.171 22.355 1.834 27.651 Atomic orbital electron populations 1.22081 0.73175 1.02426 1.04290 1.48589 1.06799 1.01976 1.57491 1.77392 1.00985 1.06126 1.26868 1.21953 0.93684 0.92933 0.99321 1.20173 0.92105 0.97724 1.02975 1.19361 0.92468 0.94089 1.21981 1.20014 0.93699 0.97532 1.01443 1.17699 0.89839 0.80695 1.02076 1.42838 1.22822 1.05607 1.58502 1.18562 0.79493 0.88646 0.78215 1.90874 1.57904 1.50187 1.40449 1.19502 0.98671 0.92107 1.07140 1.20825 0.93431 0.96182 0.95202 1.21016 1.00910 0.92654 1.01032 1.18467 0.92497 0.90482 0.92140 1.20857 0.96032 0.96396 1.01599 1.20839 0.98481 0.92934 0.96627 1.22581 1.01933 0.96063 1.13589 1.84050 1.20893 1.07602 1.55635 1.27468 0.98734 0.97772 0.95732 1.19805 0.96670 0.98651 1.05604 1.20345 0.99934 0.92076 0.98390 1.22450 0.93354 0.88549 1.02508 1.95023 1.82258 1.81231 1.20455 0.87707 0.88821 0.80306 0.76742 1.18766 1.18480 1.21233 0.89046 0.90869 0.90101 0.90456 0.90873 0.90369 0.92119 0.91408 0.92497 0.73636 0.84593 0.85043 0.84834 0.85848 0.84359 0.85126 0.97325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.32 9.24 59.84 0.55 1.88 16 2 N -0.36 -4.54 3.99 -67.06 -0.27 -4.81 16 3 N -0.29 -3.71 12.56 33.64 0.42 -3.29 16 4 C 0.09 0.91 7.20 -82.46 -0.59 0.32 16 5 C -0.07 -0.46 10.25 36.01 0.37 -0.09 16 6 C -0.26 -2.62 6.12 -104.82 -0.64 -3.26 16 7 C -0.07 -0.44 10.10 36.01 0.36 -0.08 16 8 C 0.32 3.56 7.29 -152.74 -1.11 2.44 16 9 N -0.65 -5.97 5.29 -12.29 -0.07 -6.03 16 10 C 0.56 6.21 6.76 -12.48 -0.08 6.13 16 11 O -0.52 -6.88 11.33 5.26 0.06 -6.82 16 12 C -0.17 -1.86 5.88 -104.91 -0.62 -2.48 16 13 C -0.04 -0.45 9.53 -39.58 -0.38 -0.83 16 14 C -0.14 -1.87 9.54 -39.59 -0.38 -2.24 16 15 C 0.07 0.96 5.88 -104.91 -0.62 0.34 16 16 C -0.13 -1.48 9.48 -39.60 -0.38 -1.85 16 17 C -0.07 -0.66 9.48 -39.59 -0.38 -1.03 16 18 C -0.23 -4.01 6.37 -36.93 -0.24 -4.25 16 19 S 0.05 1.12 19.46 -107.50 -2.09 -0.98 16 20 C -0.08 -1.93 5.76 -35.87 -0.21 -2.14 16 21 C -0.18 -3.97 10.00 -41.32 -0.41 -4.38 16 22 C -0.07 -1.33 9.64 -40.91 -0.39 -1.73 16 23 C 0.05 1.51 3.05 36.01 0.11 1.62 16 24 O -0.84 -29.59 17.99 -35.23 -0.63 -30.22 16 25 Si 0.84 20.86 26.49 -169.99 -4.50 16.35 16 26 H -0.26 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.26 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.09 1.08 6.88 -51.92 -0.36 0.72 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.37 7.24 -51.93 -0.38 -0.01 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 7.24 -51.93 -0.38 -0.01 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.42 2.63 6.83 -40.82 -0.28 2.35 16 39 H 0.14 1.52 7.63 -52.49 -0.40 1.12 16 40 H 0.13 1.78 7.26 -52.49 -0.38 1.40 16 41 H 0.13 1.30 6.74 -52.48 -0.35 0.94 16 42 H 0.12 0.71 6.40 -52.49 -0.34 0.37 16 43 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 44 H 0.13 1.82 6.88 -52.48 -0.36 1.46 16 45 H 0.01 0.27 7.96 -51.93 -0.41 -0.14 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -37.01 386.01 -11.58 -48.59 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: -5.29 Total: -6.97 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -5.03 Total: -11.65 kcal Atomic # 7 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.57 Total: -37.04 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.50 Total: 16.35 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.09 Total: -0.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.01 -11.58 -48.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624733087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.011 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds