Wall clock time and date at job start Mon Mar 23 2020 11:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40073 * 126.09665 * 2 1 4 4 C 1.30833 * 108.41382 * 180.25115 * 3 2 1 5 5 C 1.50699 * 125.78067 * 179.80261 * 4 3 2 6 6 C 1.39729 * 108.44250 * 359.76348 * 4 3 2 7 7 C 1.50702 * 126.07142 * 179.97438 * 6 4 3 8 8 C 1.35819 * 126.09307 * 179.83593 * 2 1 3 9 9 N 1.39369 * 126.26276 * 0.02562 * 8 2 1 10 10 C 1.34776 * 120.00338 * 330.70515 * 9 8 2 11 11 O 1.21617 * 119.99755 * 354.10990 * 10 9 8 12 12 C 1.47512 * 120.00564 * 174.10960 * 10 9 8 13 13 C 1.39852 * 120.00332 * 180.02562 * 12 10 9 14 14 C 1.36559 * 119.99348 * 180.02562 * 13 12 10 15 15 C 1.39827 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.39823 * 120.00274 * 0.25625 * 15 14 13 17 17 C 1.36552 * 120.00735 * 359.48242 * 16 15 14 18 18 C 1.47554 * 119.99754 * 179.97438 * 15 14 13 19 19 S 1.75892 * 125.27505 * 359.97208 * 18 15 14 20 20 C 1.75859 * 91.00370 * 180.02562 * 19 18 15 21 21 C 1.33774 * 109.76366 * 0.02562 * 20 19 18 22 22 C 1.35004 * 125.27773 * 180.02562 * 18 15 14 23 23 C 1.50701 * 125.12184 * 180.26724 * 20 19 18 24 24 O 1.42906 * 109.47402 * 119.69052 * 23 20 19 25 25 Si 1.86301 * 109.46988 * 359.69607 * 23 20 19 26 26 H 1.48503 * 109.47365 * 59.99580 * 25 23 20 27 27 H 1.48498 * 109.47547 * 180.02562 * 25 23 20 28 28 H 1.48506 * 109.46719 * 299.99740 * 25 23 20 29 29 H 1.09010 * 109.47058 * 272.21130 * 1 2 3 30 30 H 1.08995 * 109.47414 * 32.21427 * 1 2 3 31 31 H 1.08997 * 109.47304 * 152.21877 * 1 2 3 32 32 H 1.08996 * 109.46744 * 269.95687 * 5 4 3 33 33 H 1.09002 * 109.47293 * 29.95618 * 5 4 3 34 34 H 1.08992 * 109.47548 * 149.95739 * 5 4 3 35 35 H 1.09002 * 109.47286 * 270.02842 * 7 6 4 36 36 H 1.08999 * 109.46923 * 30.02318 * 7 6 4 37 37 H 1.09001 * 109.47104 * 150.02677 * 7 6 4 38 38 H 0.97000 * 120.00227 * 150.71011 * 9 8 2 39 39 H 1.07995 * 120.00271 * 0.04527 * 13 12 10 40 40 H 1.08000 * 119.99479 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.99610 * 179.74767 * 16 15 14 42 42 H 1.08001 * 120.00672 * 180.25707 * 17 16 15 43 43 H 1.07990 * 122.46144 * 179.97438 * 21 20 19 44 44 H 1.08004 * 122.65023 * 359.97438 * 22 18 15 45 45 H 1.08998 * 109.47467 * 239.69432 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2902 1.1318 0.0000 4 6 3.5367 0.7344 -0.0054 5 6 4.7475 1.6316 -0.0116 6 6 3.5552 -0.6627 -0.0036 7 6 4.7850 -1.5338 -0.0089 8 6 2.2650 -1.0975 0.0031 9 7 1.8426 -2.4256 0.0064 10 6 0.6681 -2.7579 0.5780 11 8 0.0281 -1.9198 1.1838 12 6 0.1588 -4.1380 0.4687 13 6 -1.0601 -4.4825 1.0614 14 6 -1.5312 -5.7603 0.9605 15 6 -0.7951 -6.7240 0.2644 16 6 0.4260 -6.3808 -0.3240 17 6 0.8947 -5.1018 -0.2279 18 6 -1.3039 -8.1048 0.1561 19 16 -2.8126 -8.6885 0.8467 20 6 -2.5145 -10.3016 0.2129 21 6 -1.3538 -10.3191 -0.4519 22 6 -0.6832 -9.1163 -0.4876 23 6 -3.4314 -11.4848 0.3875 24 8 -3.8542 -11.9531 -0.8948 25 14 -4.9204 -10.9748 1.3842 26 1 -5.6431 -9.8889 0.6743 27 1 -5.8237 -12.1408 1.5568 28 1 -4.4810 -10.4882 2.7167 29 1 -0.3634 0.0397 1.0270 30 1 -0.3634 0.8694 -0.5478 31 1 -0.3634 -0.9092 -0.4790 32 1 5.0351 1.8465 -1.0408 33 1 4.5117 2.5637 0.5020 34 1 5.5714 1.1336 0.4994 35 1 5.0764 -1.7448 -1.0378 36 1 5.5984 -1.0170 0.5003 37 1 4.5696 -2.4696 0.5069 38 1 2.3939 -3.1110 -0.4025 39 1 -1.6291 -3.7380 1.5984 40 1 -2.4727 -6.0263 1.4178 41 1 0.9964 -7.1262 -0.8582 42 1 1.8359 -4.8357 -0.6860 43 1 -0.9707 -11.2106 -0.9258 44 1 0.2644 -8.9923 -0.9907 45 1 -2.9010 -12.2818 0.9085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624733087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:01 Heat of formation + Delta-G solvation = 22.705874 kcal Electronic energy + Delta-G solvation = -29283.064456 eV Core-core repulsion = 25165.262588 eV Total energy + Delta-G solvation = -4117.801867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80985 -41.23665 -39.86286 -38.41906 -36.36873 -35.15242 -34.33650 -32.86624 -32.27132 -31.73204 -30.52455 -29.37214 -27.92641 -26.61643 -25.52360 -24.48183 -23.94743 -22.97648 -22.38431 -21.41429 -20.33126 -19.78821 -19.14057 -18.54100 -17.96350 -17.13393 -16.83207 -16.50508 -16.32664 -16.10006 -15.95483 -15.52927 -15.45695 -14.95372 -14.59877 -14.52478 -14.47114 -14.32439 -14.09697 -13.95532 -13.74959 -13.74572 -13.41942 -13.24387 -13.13981 -13.05399 -12.96755 -12.79126 -12.74362 -12.53645 -12.15828 -12.03316 -11.90269 -11.84917 -11.48094 -11.44737 -11.12171 -10.54680 -10.17638 -9.84111 -9.44502 -9.06746 -8.84063 -8.52045 -7.89333 -0.81223 0.30950 0.36169 0.57169 0.76186 0.98298 1.23156 1.29741 1.40277 1.50985 1.53532 1.73142 1.88108 2.06048 2.41697 2.82216 3.33564 3.50947 3.64557 3.71940 3.84987 4.03408 4.16620 4.21981 4.30761 4.32143 4.34942 4.43754 4.55639 4.58158 4.60968 4.67272 4.75239 4.78419 4.84921 4.91326 4.94666 5.02898 5.10991 5.11151 5.16365 5.19804 5.20347 5.26658 5.29741 5.42099 5.66862 5.70537 5.74162 5.78569 5.93155 6.10827 6.70462 6.81223 7.55798 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.001756 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.871732 B =15944.235479 C =16715.455185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.382 5.382 3 N -0.327 5.327 4 C 0.078 3.922 5 C -0.070 4.070 6 C -0.262 4.262 7 C -0.069 4.069 8 C 0.298 3.702 9 N -0.629 5.629 10 C 0.559 3.441 11 O -0.542 6.542 12 C -0.156 4.156 13 C -0.046 4.046 14 C -0.140 4.140 15 C 0.030 3.970 16 C -0.114 4.114 17 C -0.056 4.056 18 C -0.187 4.187 19 S 0.052 5.948 20 C -0.151 4.151 21 C -0.171 4.171 22 C -0.087 4.087 23 C 0.009 3.991 24 O -0.928 6.928 25 Si 0.887 3.113 26 H -0.274 1.274 27 H -0.266 1.266 28 H -0.239 1.239 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.439 0.561 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.160 0.840 42 H 0.171 0.829 43 H 0.127 0.873 44 H 0.180 0.820 45 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.720 24.780 1.583 32.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.167 5.167 3 N -0.151 5.151 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.276 4.276 7 C -0.127 4.127 8 C 0.077 3.923 9 N -0.281 5.281 10 C 0.351 3.649 11 O -0.420 6.420 12 C -0.160 4.160 13 C -0.065 4.065 14 C -0.159 4.159 15 C 0.028 3.972 16 C -0.133 4.133 17 C -0.074 4.074 18 C -0.303 4.303 19 S 0.317 5.683 20 C -0.269 4.269 21 C -0.199 4.199 22 C -0.118 4.118 23 C -0.110 4.110 24 O -0.878 6.878 25 Si 0.714 3.286 26 H -0.199 1.199 27 H -0.191 1.191 28 H -0.164 1.164 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.282 0.718 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.178 0.822 42 H 0.188 0.812 43 H 0.144 0.856 44 H 0.197 0.803 45 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 18.285 27.077 3.109 32.820 hybrid contribution 0.831 -2.350 -1.133 2.738 sum 19.116 24.727 1.975 31.317 Atomic orbital electron populations 1.21987 0.73205 1.02792 1.03515 1.48730 1.07116 1.02472 1.58397 1.77349 1.02223 1.07078 1.28499 1.22670 0.93955 0.94084 0.97981 1.20328 0.91113 0.97216 1.04184 1.19858 0.93177 0.94273 1.20273 1.20142 0.92375 0.97326 1.02822 1.18037 0.90338 0.81027 1.02883 1.42648 1.22258 1.05406 1.57813 1.18589 0.79844 0.88399 0.78085 1.90891 1.58724 1.50822 1.41556 1.19642 0.98030 0.92338 1.05967 1.20861 0.94242 0.95627 0.95761 1.20994 1.00728 0.93196 1.00973 1.18488 0.94685 0.88695 0.95314 1.21161 0.94420 0.97718 1.00030 1.21254 0.99595 0.91442 0.95116 1.22958 0.99278 0.97637 1.10396 1.83749 1.23385 1.05021 1.56144 1.26673 1.00320 0.99072 1.00877 1.20049 0.96129 1.00065 1.03693 1.20525 1.01674 0.90049 0.99523 1.22925 0.96923 0.90150 1.01030 1.94908 1.84983 1.83455 1.24457 0.86819 0.84680 0.79498 0.77637 1.19888 1.19106 1.16382 0.90449 0.90006 0.90120 0.89029 0.91014 0.88222 0.90481 0.90149 0.91605 0.71769 0.84361 0.85887 0.82212 0.81179 0.85558 0.80313 0.98851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.68 9.24 127.77 1.18 3.86 16 2 N -0.38 -9.04 3.99 -366.06 -1.46 -10.50 16 3 N -0.33 -8.02 12.56 -47.47 -0.60 -8.62 16 4 C 0.08 1.47 7.20 43.07 0.31 1.78 16 5 C -0.07 -0.71 10.25 71.24 0.73 0.02 16 6 C -0.26 -4.34 6.12 -19.99 -0.12 -4.47 16 7 C -0.07 -0.57 10.10 71.24 0.72 0.15 16 8 C 0.30 5.86 7.29 131.19 0.96 6.82 16 9 N -0.63 -9.19 5.29 -311.05 -1.64 -10.83 16 10 C 0.56 10.66 6.76 86.69 0.59 11.25 16 11 O -0.54 -13.51 11.33 -4.08 -0.05 -13.56 16 12 C -0.16 -2.80 5.88 -20.05 -0.12 -2.92 16 13 C -0.05 -0.99 9.53 22.27 0.21 -0.78 16 14 C -0.14 -3.50 9.54 22.26 0.21 -3.29 16 15 C 0.03 0.78 5.88 -20.05 -0.12 0.66 16 16 C -0.11 -1.99 9.48 22.26 0.21 -1.78 16 17 C -0.06 -0.73 9.48 22.27 0.21 -0.52 16 18 C -0.19 -6.25 6.37 23.99 0.15 -6.09 16 19 S 0.05 2.16 19.46 -56.49 -1.10 1.06 16 20 C -0.15 -7.75 5.76 24.67 0.14 -7.61 16 21 C -0.17 -7.69 10.00 21.14 0.21 -7.48 16 22 C -0.09 -2.92 9.64 21.41 0.21 -2.72 16 23 C 0.01 0.54 3.05 71.24 0.22 0.76 16 24 O -0.93 -69.63 17.99 -148.98 -2.68 -72.31 16 25 Si 0.89 44.78 26.49 68.60 1.82 46.60 16 26 H -0.27 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.24 -10.17 7.11 99.48 0.71 -9.46 16 29 H 0.08 1.84 6.88 -2.38 -0.02 1.82 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.66 6.16 -2.39 -0.01 1.65 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.57 7.24 -2.39 -0.02 0.55 16 35 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 0.49 7.24 -2.39 -0.02 0.47 16 37 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 38 H 0.44 3.10 6.83 -92.71 -0.63 2.47 16 39 H 0.14 2.90 7.63 -2.91 -0.02 2.87 16 40 H 0.12 3.21 7.26 -2.91 -0.02 3.19 16 41 H 0.16 2.01 6.74 -2.91 -0.02 1.99 16 42 H 0.17 0.66 6.40 -2.91 -0.02 0.64 16 43 H 0.13 5.78 8.06 -2.92 -0.02 5.76 16 44 H 0.18 4.17 6.88 -2.91 -0.02 4.15 16 45 H -0.01 -0.32 7.96 -2.39 -0.02 -0.34 16 Total: -1.00 -88.58 386.01 1.37 -87.20 By element: Atomic # 1 Polarization: -7.87 SS G_CDS: 1.18 Total: -6.69 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.90 Total: -12.34 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: -3.70 Total: -29.96 kcal Atomic # 8 Polarization: -83.15 SS G_CDS: -2.73 Total: -85.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.82 Total: 46.60 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.10 Total: 1.06 kcal Total: -88.58 1.37 -87.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624733087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.910 kcal (2) G-P(sol) polarization free energy of solvation -88.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds