Wall clock time and date at job start Mon Mar 23 2020 11:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50700 * 109.47112 * 2 1 4 4 N 1.30829 * 125.77625 * 304.97374 * 3 2 1 5 5 N 1.40070 * 108.41294 * 180.02562 * 4 3 2 6 6 C 1.46505 * 126.09783 * 180.02562 * 5 4 3 7 7 C 1.35810 * 107.81244 * 359.97438 * 5 4 3 8 8 N 1.39369 * 126.26485 * 180.02562 * 7 5 4 9 9 C 1.34778 * 119.99927 * 180.02562 * 8 7 5 10 10 O 1.21610 * 120.00469 * 359.97438 * 9 8 7 11 11 C 1.47524 * 120.00106 * 180.02562 * 9 8 7 12 12 C 1.39842 * 120.00185 * 179.97438 * 11 9 8 13 13 C 1.36556 * 119.99483 * 180.02562 * 12 11 9 14 14 C 1.39830 * 120.00506 * 0.02562 * 13 12 11 15 15 C 1.39829 * 120.00032 * 0.24717 * 14 13 12 16 16 C 1.36548 * 120.00363 * 359.49113 * 15 14 13 17 17 C 1.47556 * 119.99694 * 179.97438 * 14 13 12 18 18 S 1.75882 * 125.27894 * 359.97020 * 17 14 13 19 19 C 1.75863 * 91.00661 * 180.02562 * 18 17 14 20 20 C 1.33774 * 109.75652 * 359.97438 * 19 18 17 21 21 C 1.35006 * 125.27285 * 179.97438 * 17 14 13 22 22 C 1.50692 * 125.11937 * 180.26839 * 19 18 17 23 23 O 1.42901 * 109.47487 * 119.69380 * 22 19 18 24 24 Si 1.86301 * 109.47369 * 359.69469 * 22 19 18 25 25 H 1.48496 * 109.47418 * 59.99765 * 24 22 19 26 26 H 1.48498 * 109.47264 * 180.02562 * 24 22 19 27 27 H 1.48501 * 109.46942 * 299.99707 * 24 22 19 28 28 C 1.36144 * 107.46964 * 0.26070 * 7 5 4 29 29 H 1.08996 * 109.46700 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46918 * 59.99928 * 1 2 3 31 31 H 1.09003 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46700 * 239.99651 * 2 1 3 33 33 H 1.08997 * 109.46918 * 120.00071 * 2 1 3 34 34 H 1.08998 * 109.46980 * 269.96000 * 6 5 4 35 35 H 1.09004 * 109.47090 * 29.95440 * 6 5 4 36 36 H 1.08998 * 109.47406 * 149.95467 * 6 5 4 37 37 H 0.97004 * 120.00316 * 359.97438 * 8 7 5 38 38 H 1.08003 * 120.00632 * 0.03851 * 12 11 9 39 39 H 1.08008 * 119.99833 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.99392 * 179.72512 * 15 14 13 41 41 H 1.08005 * 120.00362 * 180.23095 * 16 15 14 42 42 H 1.07997 * 122.45274 * 179.97438 * 20 19 18 43 43 H 1.08005 * 122.64846 * 359.97438 * 21 17 14 44 44 H 1.09000 * 109.47570 * 239.69044 * 22 19 18 45 45 H 1.08004 * 126.07050 * 179.73755 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7138 2.3447 -0.8697 5 7 2.3858 3.5251 -0.5276 6 6 2.3065 4.8016 -1.2421 7 6 3.1231 3.2757 0.5854 8 7 3.9405 4.1854 1.2537 9 6 4.6198 3.8004 2.3522 10 8 4.5192 2.6593 2.7606 11 6 5.4846 4.7635 3.0600 12 6 6.1890 4.3641 4.2002 13 6 6.9891 5.2558 4.8555 14 6 7.1035 6.5683 4.3870 15 6 6.3947 6.9692 3.2503 16 6 5.5988 6.0762 2.5917 17 6 7.9676 7.5319 5.0956 18 16 8.9116 7.1806 6.5374 19 6 9.5213 8.8296 6.5778 20 6 9.0103 9.5258 5.5561 21 6 8.1562 8.8199 4.7377 22 6 10.4804 9.3744 7.6045 23 8 11.6700 9.8250 6.9534 24 14 10.9103 8.0345 8.8254 25 1 11.5439 6.8978 8.1102 26 1 11.8550 8.5716 9.8375 27 1 9.6742 7.5664 9.5022 28 6 2.9216 1.9730 0.9256 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0807 4.8377 -2.0085 35 1 1.3268 4.8955 -1.7108 36 1 2.4528 5.6214 -0.5388 37 1 4.0211 5.0955 0.9278 38 1 6.1005 3.3505 4.5623 39 1 7.5335 4.9473 5.7359 40 1 6.4798 7.9841 2.8910 41 1 5.0543 6.3849 1.7115 42 1 9.2494 10.5651 5.3859 43 1 7.6753 9.2620 3.8775 44 1 10.0154 10.2088 8.1295 45 1 3.3682 1.4582 1.7636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633689973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:05 Heat of formation + Delta-G solvation = 40.565846 kcal Electronic energy + Delta-G solvation = -28765.327563 eV Core-core repulsion = 24648.300162 eV Total energy + Delta-G solvation = -4117.027401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85001 -40.32716 -38.79083 -36.92148 -35.75975 -34.45081 -32.81194 -32.07258 -31.41362 -30.96156 -29.25477 -27.55492 -27.01396 -25.17116 -23.86868 -23.25581 -22.93114 -21.78385 -21.05633 -20.44051 -20.11262 -18.47596 -18.08815 -17.22959 -16.70323 -16.27391 -15.95003 -15.30334 -15.24762 -15.11390 -14.68037 -14.49983 -14.41674 -14.25196 -13.88461 -13.76534 -13.66448 -13.37388 -13.21316 -13.07807 -12.91481 -12.65078 -12.39274 -12.11003 -11.87087 -11.75125 -11.59106 -11.52097 -11.30209 -11.13953 -11.03422 -10.75777 -10.59673 -10.20646 -10.05201 -9.91708 -9.64326 -9.29227 -9.25472 -9.10458 -8.37899 -7.83326 -7.33491 -6.09075 -5.50679 0.30348 1.27467 1.43806 1.77179 1.88353 2.18644 2.50351 2.67736 2.70328 2.84340 3.35254 3.40900 3.46591 3.53763 3.88034 4.06942 4.18358 4.43155 4.50704 4.52614 4.68734 4.72006 4.76427 4.83450 4.93586 5.02498 5.16722 5.20427 5.21369 5.28405 5.34619 5.55122 5.57979 5.65244 5.77038 5.80143 5.83986 5.87449 5.95517 6.04916 6.11892 6.19171 6.47234 6.50590 6.51695 6.64738 6.68604 6.89292 6.91813 7.26456 7.32648 7.41603 7.49470 7.67346 9.77248 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.001647 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.404620 B =17000.052331 C =17924.716803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.088 3.912 4 N -0.289 5.289 5 N -0.395 5.395 6 C 0.100 3.900 7 C 0.309 3.691 8 N -0.649 5.649 9 C 0.574 3.426 10 O -0.504 6.504 11 C -0.166 4.166 12 C -0.037 4.037 13 C -0.136 4.136 14 C 0.065 3.935 15 C -0.129 4.129 16 C -0.072 4.072 17 C -0.225 4.225 18 S 0.055 5.945 19 C -0.079 4.079 20 C -0.181 4.181 21 C -0.076 4.076 22 C 0.054 3.946 23 O -0.843 6.843 24 Si 0.836 3.164 25 H -0.263 1.263 26 H -0.260 1.260 27 H -0.284 1.284 28 C -0.274 4.274 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.409 0.591 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.010 0.990 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.524 -11.613 -15.191 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.078 4.078 4 N -0.112 5.112 5 N -0.183 5.183 6 C -0.042 4.042 7 C 0.090 3.910 8 N -0.297 5.297 9 C 0.364 3.636 10 O -0.378 6.378 11 C -0.170 4.170 12 C -0.055 4.055 13 C -0.155 4.155 14 C 0.063 3.937 15 C -0.149 4.149 16 C -0.091 4.091 17 C -0.341 4.341 18 S 0.319 5.681 19 C -0.198 4.198 20 C -0.207 4.207 21 C -0.109 4.109 22 C -0.068 4.068 23 O -0.790 6.790 24 Si 0.664 3.336 25 H -0.187 1.187 26 H -0.185 1.185 27 H -0.212 1.212 28 C -0.306 4.306 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.246 0.754 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.026 0.974 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -21.521 -13.797 -14.573 29.426 hybrid contribution 0.344 1.928 -0.588 2.045 sum -21.177 -11.868 -15.161 28.621 Atomic orbital electron populations 1.21709 0.94417 1.01760 1.02444 1.19984 0.96232 0.88524 1.03392 1.22207 0.96219 0.96299 0.93118 1.77342 1.19744 0.90691 1.23410 1.48584 1.37448 1.10713 1.21560 1.21810 1.04814 0.80456 0.97079 1.18092 0.93012 0.91248 0.88671 1.42823 1.44841 1.13782 1.28288 1.18269 0.78825 0.87866 0.78609 1.90728 1.62705 1.19504 1.64881 1.19474 1.03765 0.93892 0.99855 1.20841 0.92508 1.00017 0.92178 1.21026 1.00548 0.92633 1.01287 1.18463 0.91350 0.91831 0.92092 1.20838 0.98027 1.00298 0.95715 1.20796 0.97580 0.92154 0.98601 1.22584 1.09610 0.97603 1.04298 1.84052 1.42525 1.16461 1.25034 1.27465 0.97015 0.92299 1.02997 1.19797 1.01812 1.02259 0.96845 1.20337 0.98404 0.92407 0.99708 1.22445 0.92643 0.96871 0.94886 1.95021 1.28378 1.82306 1.73279 0.87706 0.80942 0.82719 0.82213 1.18746 1.18492 1.21222 1.21574 1.09315 0.92464 1.07198 0.92645 0.92194 0.92172 0.90214 0.89741 0.90670 0.88754 0.90199 0.75359 0.84391 0.84978 0.84902 0.86129 0.84394 0.85176 0.97355 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.87 37.16 0.37 -0.67 16 2 C -0.04 -0.34 6.51 -27.88 -0.18 -0.52 16 3 C 0.09 0.99 6.48 -82.46 -0.53 0.45 16 4 N -0.29 -3.38 12.53 33.64 0.42 -2.95 16 5 N -0.39 -3.94 4.04 -67.05 -0.27 -4.21 16 6 C 0.10 0.53 11.30 59.85 0.68 1.20 16 7 C 0.31 3.44 7.68 -152.75 -1.17 2.26 16 8 N -0.65 -6.02 5.36 -12.29 -0.07 -6.09 16 9 C 0.57 6.68 7.73 -12.47 -0.10 6.58 16 10 O -0.50 -7.20 13.46 5.27 0.07 -7.13 16 11 C -0.17 -1.87 5.88 -104.91 -0.62 -2.48 16 12 C -0.04 -0.45 9.53 -39.59 -0.38 -0.83 16 13 C -0.14 -1.87 9.54 -39.59 -0.38 -2.25 16 14 C 0.06 0.94 5.88 -104.91 -0.62 0.33 16 15 C -0.13 -1.48 9.48 -39.60 -0.38 -1.86 16 16 C -0.07 -0.69 9.48 -39.59 -0.38 -1.06 16 17 C -0.23 -4.01 6.37 -36.93 -0.24 -4.25 16 18 S 0.05 1.14 19.46 -107.50 -2.09 -0.95 16 19 C -0.08 -1.95 5.76 -35.88 -0.21 -2.16 16 20 C -0.18 -3.97 10.00 -41.32 -0.41 -4.39 16 21 C -0.08 -1.35 9.64 -40.91 -0.39 -1.75 16 22 C 0.05 1.52 3.05 36.00 0.11 1.63 16 23 O -0.84 -29.62 17.99 -35.23 -0.63 -30.25 16 24 Si 0.84 20.88 26.49 -169.99 -4.50 16.38 16 25 H -0.26 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C -0.27 -3.39 9.56 -39.78 -0.38 -3.77 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.23 7.52 -51.93 -0.39 -0.16 16 37 H 0.41 2.41 6.00 -40.82 -0.24 2.17 16 38 H 0.14 1.59 7.64 -52.48 -0.40 1.19 16 39 H 0.13 1.80 7.26 -52.48 -0.38 1.42 16 40 H 0.13 1.29 6.74 -52.49 -0.35 0.93 16 41 H 0.12 0.67 6.38 -52.48 -0.33 0.34 16 42 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 43 H 0.13 1.82 6.88 -52.48 -0.36 1.45 16 44 H 0.01 0.26 7.96 -51.93 -0.41 -0.15 16 45 H 0.17 2.31 5.83 -52.48 -0.31 2.00 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -37.59 391.61 -11.74 -49.33 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -5.36 Total: -6.48 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -5.20 Total: -13.53 kcal Atomic # 7 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.56 Total: -37.39 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.50 Total: 16.38 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.09 Total: -0.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.59 -11.74 -49.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633689973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.896 kcal (2) G-P(sol) polarization free energy of solvation -37.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds