Wall clock time and date at job start Mon Mar 23 2020 11:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50700 * 109.47112 * 2 1 4 4 N 1.30829 * 125.77625 * 304.97374 * 3 2 1 5 5 N 1.40070 * 108.41294 * 180.02562 * 4 3 2 6 6 C 1.46505 * 126.09783 * 180.02562 * 5 4 3 7 7 C 1.35810 * 107.81244 * 359.97438 * 5 4 3 8 8 N 1.39369 * 126.26485 * 180.02562 * 7 5 4 9 9 C 1.34778 * 119.99927 * 180.02562 * 8 7 5 10 10 O 1.21610 * 120.00469 * 359.97438 * 9 8 7 11 11 C 1.47524 * 120.00106 * 180.02562 * 9 8 7 12 12 C 1.39842 * 120.00185 * 179.97438 * 11 9 8 13 13 C 1.36556 * 119.99483 * 180.02562 * 12 11 9 14 14 C 1.39830 * 120.00506 * 0.02562 * 13 12 11 15 15 C 1.39829 * 120.00032 * 0.24717 * 14 13 12 16 16 C 1.36548 * 120.00363 * 359.49113 * 15 14 13 17 17 C 1.47556 * 119.99694 * 179.97438 * 14 13 12 18 18 S 1.75882 * 125.27894 * 359.97020 * 17 14 13 19 19 C 1.75863 * 91.00661 * 180.02562 * 18 17 14 20 20 C 1.33774 * 109.75652 * 359.97438 * 19 18 17 21 21 C 1.35006 * 125.27285 * 179.97438 * 17 14 13 22 22 C 1.50692 * 125.11937 * 180.26839 * 19 18 17 23 23 O 1.42901 * 109.47487 * 119.69380 * 22 19 18 24 24 Si 1.86301 * 109.47369 * 359.69469 * 22 19 18 25 25 H 1.48496 * 109.47418 * 59.99765 * 24 22 19 26 26 H 1.48498 * 109.47264 * 180.02562 * 24 22 19 27 27 H 1.48501 * 109.46942 * 299.99707 * 24 22 19 28 28 C 1.36144 * 107.46964 * 0.26070 * 7 5 4 29 29 H 1.08996 * 109.46700 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46918 * 59.99928 * 1 2 3 31 31 H 1.09003 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46700 * 239.99651 * 2 1 3 33 33 H 1.08997 * 109.46918 * 120.00071 * 2 1 3 34 34 H 1.08998 * 109.46980 * 269.96000 * 6 5 4 35 35 H 1.09004 * 109.47090 * 29.95440 * 6 5 4 36 36 H 1.08998 * 109.47406 * 149.95467 * 6 5 4 37 37 H 0.97004 * 120.00316 * 359.97438 * 8 7 5 38 38 H 1.08003 * 120.00632 * 0.03851 * 12 11 9 39 39 H 1.08008 * 119.99833 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.99392 * 179.72512 * 15 14 13 41 41 H 1.08005 * 120.00362 * 180.23095 * 16 15 14 42 42 H 1.07997 * 122.45274 * 179.97438 * 20 19 18 43 43 H 1.08005 * 122.64846 * 359.97438 * 21 17 14 44 44 H 1.09000 * 109.47570 * 239.69044 * 22 19 18 45 45 H 1.08004 * 126.07050 * 179.73755 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7138 2.3447 -0.8697 5 7 2.3858 3.5251 -0.5276 6 6 2.3065 4.8016 -1.2421 7 6 3.1231 3.2757 0.5854 8 7 3.9405 4.1854 1.2537 9 6 4.6198 3.8004 2.3522 10 8 4.5192 2.6593 2.7606 11 6 5.4846 4.7635 3.0600 12 6 6.1890 4.3641 4.2002 13 6 6.9891 5.2558 4.8555 14 6 7.1035 6.5683 4.3870 15 6 6.3947 6.9692 3.2503 16 6 5.5988 6.0762 2.5917 17 6 7.9676 7.5319 5.0956 18 16 8.9116 7.1806 6.5374 19 6 9.5213 8.8296 6.5778 20 6 9.0103 9.5258 5.5561 21 6 8.1562 8.8199 4.7377 22 6 10.4804 9.3744 7.6045 23 8 11.6700 9.8250 6.9534 24 14 10.9103 8.0345 8.8254 25 1 11.5439 6.8978 8.1102 26 1 11.8550 8.5716 9.8375 27 1 9.6742 7.5664 9.5022 28 6 2.9216 1.9730 0.9256 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0807 4.8377 -2.0085 35 1 1.3268 4.8955 -1.7108 36 1 2.4528 5.6214 -0.5388 37 1 4.0211 5.0955 0.9278 38 1 6.1005 3.3505 4.5623 39 1 7.5335 4.9473 5.7359 40 1 6.4798 7.9841 2.8910 41 1 5.0543 6.3849 1.7115 42 1 9.2494 10.5651 5.3859 43 1 7.6753 9.2620 3.8775 44 1 10.0154 10.2088 8.1295 45 1 3.3682 1.4582 1.7636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633689973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:04 Heat of formation + Delta-G solvation = 15.571131 kcal Electronic energy + Delta-G solvation = -28766.411415 eV Core-core repulsion = 24648.300162 eV Total energy + Delta-G solvation = -4118.111253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65414 -41.23616 -39.83217 -38.40359 -36.57151 -35.17433 -34.33964 -32.79245 -32.58348 -32.23623 -30.25950 -29.08175 -27.60019 -26.60318 -24.64772 -24.38833 -23.93605 -23.02741 -22.46549 -21.25868 -20.98196 -19.76780 -19.00635 -18.09923 -18.04745 -17.03948 -16.96936 -16.65847 -16.09861 -15.97560 -15.89524 -15.54390 -15.45460 -15.08129 -14.93811 -14.92979 -14.61439 -14.56268 -14.30373 -14.12816 -13.77136 -13.70710 -13.39917 -13.12693 -13.09598 -12.96744 -12.94947 -12.53505 -12.35009 -12.26800 -12.14789 -12.02583 -11.91120 -11.84160 -11.53370 -11.42980 -11.13785 -10.55599 -10.16647 -9.81693 -9.43628 -9.25204 -8.83222 -8.51313 -7.88615 -0.79525 0.32756 0.37099 0.58104 0.78000 0.99010 1.02715 1.30681 1.41279 1.53847 1.57683 1.85355 2.00568 2.08969 2.42509 2.84126 3.31114 3.47676 3.61918 3.71693 3.86000 3.93196 4.21851 4.22945 4.32850 4.37229 4.43112 4.44406 4.46016 4.59660 4.60197 4.60503 4.64783 4.67207 4.79671 4.85811 4.94926 5.02567 5.09157 5.11808 5.17590 5.19266 5.22652 5.27923 5.36289 5.42640 5.67762 5.71261 5.71894 5.75322 5.91544 6.16618 6.69822 6.84326 7.56556 Molecular weight = 370.11amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.001647 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.404620 B =17000.052331 C =17924.716803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C 0.081 3.919 4 N -0.309 5.309 5 N -0.390 5.390 6 C 0.086 3.914 7 C 0.305 3.695 8 N -0.630 5.630 9 C 0.574 3.426 10 O -0.534 6.534 11 C -0.154 4.154 12 C -0.046 4.046 13 C -0.139 4.139 14 C 0.030 3.970 15 C -0.113 4.113 16 C -0.057 4.057 17 C -0.186 4.186 18 S 0.053 5.947 19 C -0.152 4.152 20 C -0.171 4.171 21 C -0.087 4.087 22 C 0.010 3.990 23 O -0.928 6.928 24 Si 0.887 3.113 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.239 1.239 28 C -0.303 4.303 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.428 0.572 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.161 0.839 41 H 0.172 0.828 42 H 0.126 0.874 43 H 0.180 0.820 44 H -0.006 1.006 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.828 -12.588 -17.890 33.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.085 4.085 4 N -0.133 5.133 5 N -0.178 5.178 6 C -0.054 4.054 7 C 0.084 3.916 8 N -0.279 5.279 9 C 0.365 3.635 10 O -0.410 6.410 11 C -0.157 4.157 12 C -0.065 4.065 13 C -0.158 4.158 14 C 0.027 3.973 15 C -0.133 4.133 16 C -0.075 4.075 17 C -0.302 4.302 18 S 0.318 5.682 19 C -0.270 4.270 20 C -0.199 4.199 21 C -0.118 4.118 22 C -0.110 4.110 23 O -0.878 6.878 24 Si 0.713 3.287 25 H -0.199 1.199 26 H -0.191 1.191 27 H -0.164 1.164 28 C -0.334 4.334 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.269 0.731 38 H 0.157 0.843 39 H 0.142 0.858 40 H 0.179 0.821 41 H 0.189 0.811 42 H 0.144 0.856 43 H 0.197 0.803 44 H 0.011 0.989 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.866 -14.743 -17.273 33.676 hybrid contribution 1.088 2.113 0.024 2.376 sum -23.778 -12.631 -17.249 31.976 Atomic orbital electron populations 1.21657 0.93697 1.02777 1.01570 1.20108 0.96809 0.87250 1.04170 1.22586 0.95893 0.97413 0.92643 1.77290 1.20565 0.91515 1.23932 1.48911 1.36328 1.11482 1.21102 1.22266 1.05880 0.79155 0.98096 1.18094 0.93168 0.91224 0.89078 1.42564 1.43717 1.14370 1.27286 1.18338 0.78829 0.87434 0.78949 1.90744 1.63618 1.20861 1.65800 1.19600 1.02503 0.94683 0.98938 1.20876 0.92786 1.00000 0.92859 1.21000 1.00732 0.92795 1.01261 1.18493 0.93189 0.91458 0.94119 1.21157 0.96401 1.01866 0.93864 1.21232 0.96449 0.90460 0.99346 1.22957 1.07414 0.98094 1.01773 1.83759 1.43409 1.13434 1.27630 1.26675 1.00525 0.95409 1.04400 1.20042 1.01393 1.02006 0.96462 1.20522 0.98332 0.92116 1.00847 1.22915 0.91772 0.99001 0.97294 1.94907 1.32457 1.84574 1.75868 0.86823 0.81739 0.79956 0.80155 1.19879 1.19123 1.16363 1.21603 1.10559 0.93638 1.07632 0.93496 0.92979 0.90224 0.89288 0.89066 0.89173 0.88112 0.87198 0.73139 0.84305 0.85799 0.82136 0.81122 0.85586 0.80292 0.98879 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.87 71.99 0.71 -1.11 16 2 C -0.04 -0.67 6.51 29.85 0.19 -0.48 16 3 C 0.08 1.73 6.48 43.07 0.28 2.00 16 4 N -0.31 -6.71 12.53 -47.48 -0.59 -7.31 16 5 N -0.39 -6.67 4.04 -366.05 -1.48 -8.15 16 6 C 0.09 0.55 11.30 127.77 1.44 1.99 16 7 C 0.31 5.98 7.68 131.19 1.01 6.99 16 8 N -0.63 -9.10 5.36 -311.05 -1.67 -10.77 16 9 C 0.57 11.49 7.73 86.69 0.67 12.16 16 10 O -0.53 -14.47 13.46 -4.06 -0.05 -14.52 16 11 C -0.15 -2.81 5.88 -20.05 -0.12 -2.93 16 12 C -0.05 -1.03 9.53 22.26 0.21 -0.81 16 13 C -0.14 -3.50 9.54 22.26 0.21 -3.29 16 14 C 0.03 0.76 5.88 -20.05 -0.12 0.64 16 15 C -0.11 -1.95 9.48 22.26 0.21 -1.74 16 16 C -0.06 -0.72 9.48 22.27 0.21 -0.51 16 17 C -0.19 -6.22 6.37 23.99 0.15 -6.07 16 18 S 0.05 2.19 19.46 -56.49 -1.10 1.09 16 19 C -0.15 -7.78 5.76 24.67 0.14 -7.64 16 20 C -0.17 -7.65 10.00 21.14 0.21 -7.44 16 21 C -0.09 -2.92 9.64 21.41 0.21 -2.72 16 22 C 0.01 0.57 3.05 71.23 0.22 0.79 16 23 O -0.93 -69.59 17.99 -148.98 -2.68 -72.27 16 24 Si 0.89 44.76 26.49 68.60 1.82 46.58 16 25 H -0.27 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.24 -10.16 7.11 99.48 0.71 -9.45 16 28 C -0.30 -7.19 9.56 22.14 0.21 -6.98 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.21 8.12 -2.39 -0.02 1.20 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.11 0.03 7.52 -2.39 -0.02 0.01 16 37 H 0.43 2.50 6.00 -92.71 -0.56 1.95 16 38 H 0.14 3.02 7.64 -2.91 -0.02 3.00 16 39 H 0.12 3.25 7.26 -2.91 -0.02 3.23 16 40 H 0.16 1.94 6.74 -2.91 -0.02 1.92 16 41 H 0.17 0.49 6.38 -2.91 -0.02 0.47 16 42 H 0.13 5.75 8.06 -2.91 -0.02 5.73 16 43 H 0.18 4.13 6.88 -2.91 -0.02 4.11 16 44 H -0.01 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.16 4.20 5.83 -2.91 -0.02 4.18 16 Total: -1.00 -90.15 391.61 1.55 -88.60 By element: Atomic # 1 Polarization: -7.37 SS G_CDS: 1.25 Total: -6.12 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 6.06 Total: -17.13 kcal Atomic # 7 Polarization: -22.48 SS G_CDS: -3.74 Total: -26.22 kcal Atomic # 8 Polarization: -84.06 SS G_CDS: -2.73 Total: -86.80 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.82 Total: 46.58 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.10 Total: 1.09 kcal Total: -90.15 1.55 -88.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633689973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.170 kcal (2) G-P(sol) polarization free energy of solvation -90.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds