Wall clock time and date at job start Mon Mar 23 2020 11:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47330 * 2 1 4 4 H 1.48507 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47148 * 300.00008 * 3 2 1 6 6 H 1.48499 * 109.47020 * 60.00045 * 3 2 1 7 7 C 1.50707 * 109.46995 * 119.99797 * 2 1 3 8 8 C 1.38267 * 119.94267 * 65.00280 * 7 2 1 9 9 C 1.38141 * 120.05602 * 179.97438 * 8 7 2 10 10 C 1.38731 * 119.94482 * 0.02562 * 9 8 7 11 11 O 1.35903 * 120.05927 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00139 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47002 * 180.02562 * 12 11 10 14 14 C 1.36416 * 125.80113 * 89.99799 * 13 12 11 15 15 C 1.47369 * 127.19420 * 359.96563 * 14 13 12 16 16 O 1.21616 * 120.00416 * 44.31853 * 15 14 13 17 17 N 1.34778 * 119.99945 * 224.32084 * 15 14 13 18 18 C 1.47232 * 121.71601 * 355.77715 * 17 15 14 19 19 C 1.53093 * 109.39575 * 131.44160 * 18 17 15 20 20 N 1.47451 * 109.78296 * 48.45227 * 19 18 17 21 21 C 1.48070 * 109.71658 * 48.99449 * 20 19 18 22 22 C 1.54096 * 106.83420 * 269.95139 * 21 20 19 23 23 C 1.48381 * 121.71716 * 175.75580 * 17 15 14 24 24 H 1.09002 * 114.47349 * 5.50266 * 23 17 15 25 25 C 1.48803 * 108.52903 * 294.46199 * 20 19 18 26 26 C 1.47017 * 105.61269 * 180.22375 * 14 13 12 27 27 C 1.34185 * 105.95346 * 359.63258 * 26 14 13 28 28 O 1.33649 * 125.79602 * 269.99830 * 13 12 11 29 29 C 1.38733 * 119.88838 * 0.26754 * 10 9 8 30 30 C 1.38143 * 119.94263 * 359.47757 * 29 10 9 31 31 H 0.96693 * 114.00046 * 60.00295 * 1 2 3 32 32 H 1.09002 * 109.47585 * 239.99611 * 2 1 3 33 33 H 1.08001 * 119.97245 * 0.02562 * 8 7 2 34 34 H 1.08003 * 120.03155 * 179.97438 * 9 8 7 35 35 H 1.08991 * 109.47412 * 59.99949 * 12 11 10 36 36 H 1.09010 * 109.47004 * 299.99863 * 12 11 10 37 37 H 1.08997 * 109.48430 * 11.46562 * 18 17 15 38 38 H 1.08996 * 109.48823 * 251.41704 * 18 17 15 39 39 H 1.08999 * 109.42260 * 168.54544 * 19 18 17 40 40 H 1.09001 * 109.42360 * 288.42133 * 19 18 17 41 41 H 1.09002 * 109.98741 * 29.29376 * 21 20 19 42 42 H 1.08999 * 109.98959 * 150.60774 * 21 20 19 43 43 H 1.08996 * 110.42089 * 241.92849 * 22 21 20 44 44 H 1.08998 * 110.42217 * 119.45347 * 22 21 20 45 45 H 1.08997 * 110.98123 * 192.62342 * 25 20 19 46 46 H 1.08996 * 110.98307 * 316.37576 * 25 20 19 47 47 H 1.08004 * 127.02398 * 179.73921 * 26 14 13 48 48 H 1.08004 * 125.43637 * 180.12475 * 27 26 14 49 49 H 1.08001 * 120.03146 * 179.72173 * 29 10 9 50 50 H 1.08003 * 119.97379 * 180.26938 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5351 1.7564 0.0006 5 1 1.5551 2.4564 -1.2125 6 1 1.5551 2.4564 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 1.6840 -2.0605 1.3973 9 6 2.1438 -2.7141 2.5241 10 6 2.8538 -2.0146 3.4891 11 8 3.3068 -2.6552 4.5988 12 6 4.0308 -1.8721 5.5499 13 6 4.4506 -2.7454 6.7041 14 6 5.6180 -3.4457 6.7916 15 6 6.7015 -3.4995 5.7942 16 8 7.0827 -2.4784 5.2547 17 7 7.2701 -4.6803 5.4798 18 6 6.9026 -5.9255 6.1742 19 6 6.6202 -7.0195 5.1411 20 7 7.7112 -7.0637 4.1502 21 6 9.0177 -7.0907 4.8465 22 6 9.4534 -5.6247 5.0350 23 6 8.2982 -4.7924 4.4158 24 1 8.6125 -3.8398 3.9895 25 6 7.7033 -5.7899 3.3810 26 6 5.5665 -4.1406 8.0862 27 6 4.3982 -3.7911 8.6461 28 8 3.7423 -2.9654 7.8159 29 6 3.0954 -0.6587 3.3224 30 6 2.6380 -0.0108 2.1913 31 1 -0.3933 0.4416 -0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.1316 -2.6047 0.6456 34 1 1.9501 -3.7686 2.6541 35 1 3.3951 -1.0661 5.9161 36 1 4.9157 -1.4493 5.0740 37 1 6.0106 -5.7559 6.7772 38 1 7.7237 -6.2380 6.8193 39 1 6.5487 -7.9836 5.6445 40 1 5.6797 -6.8049 4.6338 41 1 8.9128 -7.5759 5.8169 42 1 9.7517 -7.6225 4.2410 43 1 10.3863 -5.4339 4.5045 44 1 9.5632 -5.3938 6.0945 45 1 8.3394 -5.8626 2.4989 46 1 6.6875 -5.5069 3.1049 47 1 6.3166 -4.7968 8.5024 48 1 4.0408 -4.1247 9.6092 49 1 3.6440 -0.1110 4.0743 50 1 2.8296 1.0438 2.0589 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854729368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:55:04 Heat of formation + Delta-G solvation = -25.101955 kcal Electronic energy + Delta-G solvation = -34736.661921 eV Core-core repulsion = 30198.492773 eV Total energy + Delta-G solvation = -4538.169148 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 372.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.79772 -42.07996 -41.21755 -39.55898 -39.07541 -37.23912 -35.36887 -34.04296 -33.12468 -32.89722 -31.95058 -31.45912 -30.25712 -28.64590 -27.57678 -26.08998 -24.84853 -24.61518 -23.78058 -22.70740 -22.14335 -21.90131 -21.32169 -19.92699 -19.44410 -18.85737 -18.47194 -17.94235 -17.56136 -17.24504 -17.02211 -16.92028 -16.74079 -16.46727 -16.04395 -15.89089 -15.83797 -15.66311 -15.36269 -15.19907 -14.71177 -14.51735 -14.45554 -14.41429 -14.10031 -14.05454 -13.93628 -13.71046 -13.56508 -13.40295 -13.01219 -12.69426 -12.46938 -12.44948 -12.43017 -12.20739 -12.07921 -12.07132 -11.96323 -11.80399 -11.66082 -11.11047 -10.87369 -10.36716 -10.31828 -9.96661 -9.90338 -9.26393 -9.15218 0.11425 0.34632 0.37766 0.92610 1.15840 1.42086 1.44029 1.50531 1.71855 1.91097 1.91187 2.41435 2.68811 2.87001 3.24495 3.32467 3.45699 3.54560 3.63013 3.68440 3.74855 3.75756 3.85846 3.87748 3.89533 3.92467 3.99027 4.05438 4.08966 4.24052 4.31044 4.31513 4.38253 4.40879 4.44320 4.50847 4.52768 4.60631 4.71812 4.73017 4.74357 4.75409 4.80242 4.86436 4.92973 4.99974 5.06611 5.21698 5.31806 5.34428 5.56955 5.63017 5.73312 5.79814 5.84301 6.25815 6.30913 6.59840 7.04081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.076 4.076 3 Si 0.943 3.057 4 H -0.249 1.249 5 H -0.256 1.256 6 H -0.248 1.248 7 C -0.112 4.112 8 C -0.048 4.048 9 C -0.147 4.147 10 C 0.136 3.864 11 O -0.308 6.308 12 C 0.132 3.868 13 C 0.054 3.946 14 C -0.202 4.202 15 C 0.596 3.404 16 O -0.534 6.534 17 N -0.603 5.603 18 C 0.066 3.934 19 C 0.023 3.977 20 N -0.498 5.498 21 C 0.027 3.973 22 C -0.162 4.162 23 C 0.109 3.891 24 H 0.126 0.874 25 C 0.020 3.980 26 C -0.198 4.198 27 C -0.011 4.011 28 O -0.164 6.164 29 C -0.201 4.201 30 C -0.081 4.081 31 H 0.380 0.620 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.162 0.838 48 H 0.215 0.785 49 H 0.133 0.867 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -2.394 1.043 2.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.173 1.173 5 H -0.181 1.181 6 H -0.172 1.172 7 C -0.112 4.112 8 C -0.066 4.066 9 C -0.165 4.165 10 C 0.091 3.909 11 O -0.223 6.223 12 C 0.058 3.942 13 C 0.002 3.998 14 C -0.207 4.207 15 C 0.385 3.615 16 O -0.412 6.412 17 N -0.336 5.336 18 C -0.058 4.058 19 C -0.107 4.107 20 N -0.219 5.219 21 C -0.101 4.101 22 C -0.201 4.201 23 C 0.005 3.995 24 H 0.144 0.856 25 C -0.109 4.109 26 C -0.217 4.217 27 C -0.078 4.078 28 O -0.059 6.059 29 C -0.219 4.219 30 C -0.098 4.098 31 H 0.227 0.773 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.180 0.820 48 H 0.232 0.768 49 H 0.150 0.850 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.817 -1.916 1.089 2.350 hybrid contribution 0.147 0.544 0.475 0.737 sum 0.964 -1.372 1.564 2.293 Atomic orbital electron populations 1.86514 1.17338 1.81679 1.49557 1.24648 0.85565 1.10342 0.98114 0.85803 0.80739 0.75691 0.81220 1.17272 1.18068 1.17166 1.19166 1.01397 0.94430 0.96193 1.20808 0.96125 0.93436 0.96275 1.20472 1.01557 1.00844 0.93654 1.18950 0.94439 0.90976 0.86532 1.86084 1.68986 1.37947 1.29240 1.21101 0.98165 0.90672 0.84311 1.21770 0.90530 0.99698 0.87851 1.21145 0.97505 1.03999 0.98012 1.17228 0.80615 0.82957 0.80681 1.90807 1.63086 1.33214 1.54062 1.48517 1.40442 1.07161 1.37529 1.22649 1.02273 0.84679 0.96172 1.22888 0.96049 0.98262 0.93492 1.65991 1.02403 1.33530 1.19946 1.23112 0.91874 0.95794 0.99354 1.23299 0.98845 0.95805 1.02184 1.23556 0.87112 1.00752 0.88083 0.85582 1.23935 1.02488 0.87695 0.96767 1.22893 0.99776 1.04543 0.94529 1.24087 0.93055 0.94077 0.96541 1.83792 1.44044 1.53149 1.24934 1.21158 1.06448 0.93747 1.00581 1.20777 0.96857 0.99285 0.92914 0.77327 0.90634 0.84724 0.84780 0.89334 0.87081 0.88203 0.90891 0.88896 0.89906 0.90763 0.89484 0.89665 0.90507 0.88474 0.89609 0.82028 0.76828 0.84964 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.31 12.81 -35.23 -0.45 -0.76 16 2 C -0.08 -0.01 2.79 36.01 0.10 0.09 16 3 Si 0.94 -0.05 25.14 -169.99 -4.27 -4.32 16 4 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 5 H -0.26 0.01 7.11 56.52 0.40 0.41 16 6 H -0.25 -0.32 7.04 56.52 0.40 0.08 16 7 C -0.11 -0.24 5.39 -104.60 -0.56 -0.80 16 8 C -0.05 -0.09 9.68 -39.61 -0.38 -0.48 16 9 C -0.15 -0.35 9.99 -39.43 -0.39 -0.74 16 10 C 0.14 0.42 6.69 -39.22 -0.26 0.16 16 11 O -0.31 -1.05 10.12 -19.44 -0.20 -1.24 16 12 C 0.13 0.26 5.09 36.01 0.18 0.44 16 13 C 0.05 0.13 7.00 -34.96 -0.24 -0.11 16 14 C -0.20 -0.46 5.42 -103.28 -0.56 -1.02 16 15 C 0.60 2.16 7.46 -12.54 -0.09 2.07 16 16 O -0.53 -3.49 15.57 5.26 0.08 -3.40 16 17 N -0.60 -0.74 2.70 -162.47 -0.44 -1.18 16 18 C 0.07 -0.07 5.07 -3.59 -0.02 -0.09 16 19 C 0.02 -0.02 5.91 -3.47 -0.02 -0.04 16 20 N -0.50 -0.05 5.97 -229.07 -1.37 -1.42 16 21 C 0.03 -0.03 6.22 -2.61 -0.02 -0.05 16 22 C -0.16 0.16 5.96 -24.96 -0.15 0.01 16 23 C 0.11 0.07 4.44 -64.34 -0.29 -0.22 16 24 H 0.13 0.20 7.47 -51.93 -0.39 -0.18 16 25 C 0.02 0.00 6.53 -1.41 -0.01 -0.01 16 26 C -0.20 0.12 8.75 -37.45 -0.33 -0.21 16 27 C -0.01 0.01 12.03 29.30 0.35 0.37 16 28 O -0.16 -0.25 10.52 7.66 0.08 -0.17 16 29 C -0.20 -0.46 9.04 -39.43 -0.36 -0.82 16 30 C -0.08 -0.18 8.66 -39.61 -0.34 -0.52 16 31 H 0.38 -1.47 8.74 45.56 0.40 -1.07 16 32 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.13 0.04 8.06 -52.49 -0.42 -0.38 16 34 H 0.13 0.15 8.06 -52.48 -0.42 -0.27 16 35 H 0.09 0.01 7.65 -51.93 -0.40 -0.39 16 36 H 0.11 0.26 6.39 -51.92 -0.33 -0.07 16 37 H 0.10 -0.15 4.65 -51.93 -0.24 -0.39 16 38 H 0.07 -0.15 6.24 -51.93 -0.32 -0.48 16 39 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 40 H 0.08 -0.01 7.91 -51.93 -0.41 -0.42 16 41 H 0.07 -0.14 7.02 -51.93 -0.36 -0.51 16 42 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 43 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 44 H 0.08 -0.05 7.49 -51.93 -0.39 -0.44 16 45 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 46 H 0.09 0.10 7.84 -51.93 -0.41 -0.30 16 47 H 0.16 -0.46 7.45 -52.48 -0.39 -0.85 16 48 H 0.22 -1.12 8.06 -52.48 -0.42 -1.54 16 49 H 0.13 0.06 6.30 -52.49 -0.33 -0.27 16 50 H 0.12 0.10 4.86 -52.48 -0.25 -0.15 16 LS Contribution 390.89 15.07 5.89 5.89 Total: 0.00 -8.24 390.89 -10.07 -18.31 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: -6.00 Total: -9.72 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.39 Total: -1.97 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -1.81 Total: -2.60 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.49 Total: -5.58 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: -4.27 Total: -4.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -8.24 -10.07 -18.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854729368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.795 kcal (2) G-P(sol) polarization free energy of solvation -8.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds