Wall clock time and date at job start Mon Mar 23 2020 11:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47330 * 2 1 4 4 H 1.48507 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47148 * 300.00008 * 3 2 1 6 6 H 1.48499 * 109.47020 * 60.00045 * 3 2 1 7 7 C 1.50707 * 109.46995 * 119.99797 * 2 1 3 8 8 C 1.38267 * 119.94267 * 65.00280 * 7 2 1 9 9 C 1.38141 * 120.05602 * 179.97438 * 8 7 2 10 10 C 1.38731 * 119.94482 * 0.02562 * 9 8 7 11 11 O 1.35903 * 120.05927 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00139 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47002 * 180.02562 * 12 11 10 14 14 C 1.36416 * 125.80113 * 89.99799 * 13 12 11 15 15 C 1.47369 * 127.19420 * 359.96563 * 14 13 12 16 16 O 1.21616 * 120.00416 * 44.31853 * 15 14 13 17 17 N 1.34778 * 119.99945 * 224.32084 * 15 14 13 18 18 C 1.47232 * 121.71601 * 355.77715 * 17 15 14 19 19 C 1.53093 * 109.39575 * 131.44160 * 18 17 15 20 20 N 1.47451 * 109.78296 * 48.45227 * 19 18 17 21 21 C 1.48070 * 109.71658 * 48.99449 * 20 19 18 22 22 C 1.54096 * 106.83420 * 269.95139 * 21 20 19 23 23 C 1.48381 * 121.71716 * 175.75580 * 17 15 14 24 24 H 1.09002 * 114.47349 * 5.50266 * 23 17 15 25 25 C 1.48803 * 108.52903 * 294.46199 * 20 19 18 26 26 C 1.47017 * 105.61269 * 180.22375 * 14 13 12 27 27 C 1.34185 * 105.95346 * 359.63258 * 26 14 13 28 28 O 1.33649 * 125.79602 * 269.99830 * 13 12 11 29 29 C 1.38733 * 119.88838 * 0.26754 * 10 9 8 30 30 C 1.38143 * 119.94263 * 359.47757 * 29 10 9 31 31 H 0.96693 * 114.00046 * 60.00295 * 1 2 3 32 32 H 1.09002 * 109.47585 * 239.99611 * 2 1 3 33 33 H 1.08001 * 119.97245 * 0.02562 * 8 7 2 34 34 H 1.08003 * 120.03155 * 179.97438 * 9 8 7 35 35 H 1.08991 * 109.47412 * 59.99949 * 12 11 10 36 36 H 1.09010 * 109.47004 * 299.99863 * 12 11 10 37 37 H 1.08997 * 109.48430 * 11.46562 * 18 17 15 38 38 H 1.08996 * 109.48823 * 251.41704 * 18 17 15 39 39 H 1.08999 * 109.42260 * 168.54544 * 19 18 17 40 40 H 1.09001 * 109.42360 * 288.42133 * 19 18 17 41 41 H 1.09002 * 109.98741 * 29.29376 * 21 20 19 42 42 H 1.08999 * 109.98959 * 150.60774 * 21 20 19 43 43 H 1.08996 * 110.42089 * 241.92849 * 22 21 20 44 44 H 1.08998 * 110.42217 * 119.45347 * 22 21 20 45 45 H 1.08997 * 110.98123 * 192.62342 * 25 20 19 46 46 H 1.08996 * 110.98307 * 316.37576 * 25 20 19 47 47 H 1.08004 * 127.02398 * 179.73921 * 26 14 13 48 48 H 1.08004 * 125.43637 * 180.12475 * 27 26 14 49 49 H 1.08001 * 120.03146 * 179.72173 * 29 10 9 50 50 H 1.08003 * 119.97379 * 180.26938 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5351 1.7564 0.0006 5 1 1.5551 2.4564 -1.2125 6 1 1.5551 2.4564 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 1.6840 -2.0605 1.3973 9 6 2.1438 -2.7141 2.5241 10 6 2.8538 -2.0146 3.4891 11 8 3.3068 -2.6552 4.5988 12 6 4.0308 -1.8721 5.5499 13 6 4.4506 -2.7454 6.7041 14 6 5.6180 -3.4457 6.7916 15 6 6.7015 -3.4995 5.7942 16 8 7.0827 -2.4784 5.2547 17 7 7.2701 -4.6803 5.4798 18 6 6.9026 -5.9255 6.1742 19 6 6.6202 -7.0195 5.1411 20 7 7.7112 -7.0637 4.1502 21 6 9.0177 -7.0907 4.8465 22 6 9.4534 -5.6247 5.0350 23 6 8.2982 -4.7924 4.4158 24 1 8.6125 -3.8398 3.9895 25 6 7.7033 -5.7899 3.3810 26 6 5.5665 -4.1406 8.0862 27 6 4.3982 -3.7911 8.6461 28 8 3.7423 -2.9654 7.8159 29 6 3.0954 -0.6587 3.3224 30 6 2.6380 -0.0108 2.1913 31 1 -0.3933 0.4416 -0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.1316 -2.6047 0.6456 34 1 1.9501 -3.7686 2.6541 35 1 3.3951 -1.0661 5.9161 36 1 4.9157 -1.4493 5.0740 37 1 6.0106 -5.7559 6.7772 38 1 7.7237 -6.2380 6.8193 39 1 6.5487 -7.9836 5.6445 40 1 5.6797 -6.8049 4.6338 41 1 8.9128 -7.5759 5.8169 42 1 9.7517 -7.6225 4.2410 43 1 10.3863 -5.4339 4.5045 44 1 9.5632 -5.3938 6.0945 45 1 8.3394 -5.8626 2.4989 46 1 6.6875 -5.5069 3.1049 47 1 6.3166 -4.7968 8.5024 48 1 4.0408 -4.1247 9.6092 49 1 3.6440 -0.1110 4.0743 50 1 2.8296 1.0438 2.0589 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854729368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:55:03 Heat of formation + Delta-G solvation = -25.536743 kcal Electronic energy + Delta-G solvation = -34736.680775 eV Core-core repulsion = 30198.492773 eV Total energy + Delta-G solvation = -4538.188002 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 372.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.82492 -42.11768 -41.36570 -39.75187 -39.19425 -37.27149 -35.48562 -34.08501 -33.13781 -32.93713 -32.07303 -31.54709 -30.23146 -28.71138 -27.62430 -26.16086 -24.87056 -24.67896 -23.89346 -22.71592 -22.25858 -21.86751 -21.35099 -19.97299 -19.59754 -18.91160 -18.46109 -18.06335 -17.62507 -17.30809 -17.07797 -17.01139 -16.82612 -16.53770 -16.13959 -15.93443 -15.85894 -15.74275 -15.39639 -15.29276 -14.80051 -14.53980 -14.51145 -14.48753 -14.10025 -14.02760 -13.96686 -13.80112 -13.63526 -13.40746 -13.10203 -12.73251 -12.53060 -12.45887 -12.41069 -12.30372 -12.15288 -12.05602 -11.90168 -11.86962 -11.73208 -11.31410 -10.91825 -10.45269 -10.30848 -10.11862 -9.90489 -9.31694 -9.29136 0.00057 0.18502 0.22517 0.97328 1.15722 1.35159 1.43506 1.48543 1.64385 1.78866 1.89002 2.31917 2.55259 2.90194 3.24237 3.26426 3.47321 3.52650 3.60560 3.65006 3.70324 3.77408 3.78713 3.85484 3.91977 3.93762 3.95969 3.98369 4.12157 4.21003 4.31911 4.35177 4.37721 4.40221 4.44054 4.47598 4.59596 4.60625 4.62664 4.73700 4.74808 4.76692 4.87034 4.88106 4.90104 5.02580 5.08092 5.16349 5.18495 5.31286 5.42708 5.60772 5.65391 5.82566 5.85785 6.14027 6.14813 6.83665 6.84226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.252 1.252 6 H -0.271 1.271 7 C -0.123 4.123 8 C -0.053 4.053 9 C -0.155 4.155 10 C 0.119 3.881 11 O -0.321 6.321 12 C 0.133 3.867 13 C 0.032 3.968 14 C -0.215 4.215 15 C 0.588 3.412 16 O -0.576 6.576 17 N -0.598 5.598 18 C 0.066 3.934 19 C 0.024 3.976 20 N -0.509 5.509 21 C 0.030 3.970 22 C -0.152 4.152 23 C 0.100 3.900 24 H 0.109 0.891 25 C 0.025 3.975 26 C -0.202 4.202 27 C -0.001 4.001 28 O -0.175 6.175 29 C -0.208 4.208 30 C -0.093 4.093 31 H 0.398 0.602 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.186 0.814 48 H 0.256 0.744 49 H 0.143 0.857 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -3.757 1.801 4.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.185 4.185 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.175 1.175 6 H -0.196 1.196 7 C -0.123 4.123 8 C -0.071 4.071 9 C -0.174 4.174 10 C 0.074 3.926 11 O -0.235 6.235 12 C 0.058 3.942 13 C -0.020 4.020 14 C -0.220 4.220 15 C 0.378 3.622 16 O -0.458 6.458 17 N -0.331 5.331 18 C -0.056 4.056 19 C -0.105 4.105 20 N -0.229 5.229 21 C -0.098 4.098 22 C -0.192 4.192 23 C -0.003 4.003 24 H 0.127 0.873 25 C -0.104 4.104 26 C -0.220 4.220 27 C -0.067 4.067 28 O -0.071 6.071 29 C -0.227 4.227 30 C -0.111 4.111 31 H 0.248 0.752 32 H 0.115 0.885 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.088 0.912 47 H 0.203 0.797 48 H 0.272 0.728 49 H 0.160 0.840 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.752 -3.310 1.829 3.856 hybrid contribution 0.164 0.939 0.254 0.987 sum 0.917 -2.371 2.083 3.286 Atomic orbital electron populations 1.86463 1.17400 1.82167 1.51090 1.24649 0.85591 1.10276 0.97958 0.85394 0.79525 0.75272 0.80151 1.18624 1.17546 1.19595 1.19508 1.01120 0.94784 0.96876 1.21032 0.96069 0.93587 0.96403 1.20683 1.01544 1.01354 0.93808 1.19159 0.95120 0.91460 0.86841 1.86056 1.69219 1.38649 1.29603 1.21082 0.97811 0.91070 0.84189 1.21811 0.91122 1.00630 0.88450 1.21276 0.97012 1.04684 0.99027 1.17551 0.80882 0.83069 0.80740 1.90771 1.64541 1.34727 1.55715 1.48631 1.39845 1.07337 1.37251 1.22810 1.03213 0.83433 0.96190 1.22912 0.95200 0.99113 0.93289 1.66003 1.03333 1.33026 1.20580 1.23144 0.91199 0.95483 0.99991 1.23237 0.98307 0.95614 1.02019 1.23602 0.87917 1.00371 0.88446 0.87305 1.23859 1.01630 0.87883 0.97058 1.23164 1.00784 1.04854 0.93240 1.24951 0.92435 0.92252 0.97020 1.83792 1.44494 1.53838 1.24939 1.21350 1.06502 0.93757 1.01063 1.20998 0.97167 0.99865 0.93090 0.75151 0.88483 0.83148 0.84039 0.88017 0.88263 0.87615 0.89098 0.87062 0.91234 0.89404 0.89069 0.88895 0.90515 0.87783 0.91214 0.79671 0.72824 0.83956 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.40 12.81 -148.98 -1.91 -2.31 16 2 C -0.07 -0.01 2.79 71.24 0.20 0.19 16 3 Si 0.97 0.21 25.14 68.60 1.72 1.93 16 4 H -0.26 -0.55 7.11 99.48 0.71 0.15 16 5 H -0.25 0.18 7.11 99.48 0.71 0.88 16 6 H -0.27 -1.03 7.04 99.48 0.70 -0.33 16 7 C -0.12 -0.62 5.39 -19.85 -0.11 -0.73 16 8 C -0.05 -0.25 9.68 22.25 0.22 -0.03 16 9 C -0.16 -0.99 9.99 22.36 0.22 -0.76 16 10 C 0.12 0.99 6.69 22.51 0.15 1.14 16 11 O -0.32 -2.96 10.12 -92.46 -0.94 -3.89 16 12 C 0.13 0.85 5.09 71.24 0.36 1.22 16 13 C 0.03 0.21 7.00 25.26 0.18 0.38 16 14 C -0.22 -1.22 5.42 -19.00 -0.10 -1.33 16 15 C 0.59 5.43 7.46 86.65 0.65 6.08 16 16 O -0.58 -9.35 15.57 -4.08 -0.06 -9.41 16 17 N -0.60 -2.12 2.70 -786.17 -2.12 -4.24 16 18 C 0.07 -0.18 5.07 86.27 0.44 0.26 16 19 C 0.02 -0.05 5.91 86.23 0.51 0.46 16 20 N -0.51 0.00 5.97 -878.64 -5.24 -5.25 16 21 C 0.03 -0.10 6.22 86.45 0.54 0.43 16 22 C -0.15 0.34 5.96 31.74 0.19 0.53 16 23 C 0.10 0.26 4.44 46.28 0.21 0.47 16 24 H 0.11 0.65 7.47 -2.39 -0.02 0.63 16 25 C 0.02 0.04 6.53 86.81 0.57 0.61 16 26 C -0.20 0.40 8.75 23.65 0.21 0.61 16 27 C 0.00 0.00 12.03 66.89 0.80 0.81 16 28 O -0.17 -0.59 10.52 4.51 0.05 -0.54 16 29 C -0.21 -1.39 9.04 22.37 0.20 -1.19 16 30 C -0.09 -0.56 8.66 22.25 0.19 -0.36 16 31 H 0.40 -3.39 8.74 -74.06 -0.65 -4.04 16 32 H 0.10 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.15 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.10 0.26 7.65 -2.39 -0.02 0.24 16 36 H 0.10 0.82 6.39 -2.38 -0.02 0.81 16 37 H 0.11 -0.38 4.65 -2.39 -0.01 -0.39 16 38 H 0.09 -0.53 6.24 -2.39 -0.01 -0.55 16 39 H 0.11 -0.64 8.14 -2.39 -0.02 -0.65 16 40 H 0.07 0.04 7.91 -2.39 -0.02 0.02 16 41 H 0.09 -0.52 7.02 -2.39 -0.02 -0.54 16 42 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.09 -0.34 8.14 -2.39 -0.02 -0.35 16 44 H 0.08 -0.14 7.49 -2.39 -0.02 -0.16 16 45 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.07 0.32 7.84 -2.39 -0.02 0.31 16 47 H 0.19 -1.41 7.45 -2.91 -0.02 -1.43 16 48 H 0.26 -3.41 8.06 -2.91 -0.02 -3.43 16 49 H 0.14 0.48 6.30 -2.91 -0.02 0.46 16 50 H 0.13 0.43 4.86 -2.91 -0.01 0.41 16 Total: 0.00 -21.39 390.89 -1.79 -23.18 By element: Atomic # 1 Polarization: -9.33 SS G_CDS: 1.10 Total: -8.24 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.62 Total: 8.77 kcal Atomic # 7 Polarization: -2.13 SS G_CDS: -7.37 Total: -9.49 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -2.86 Total: -16.15 kcal Atomic # 14 Polarization: 0.21 SS G_CDS: 1.72 Total: 1.93 kcal Total: -21.39 -1.79 -23.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854729368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.356 kcal (2) G-P(sol) polarization free energy of solvation -21.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds