Wall clock time and date at job start Mon Mar 23 2020 11:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37423 * 122.44863 * 2 1 4 4 C 1.36704 * 113.29518 * 180.20151 * 3 2 1 5 5 C 1.46533 * 125.46159 * 179.83702 * 4 3 2 6 6 O 1.21710 * 119.99778 * 359.72441 * 5 4 3 7 7 N 1.34774 * 120.00145 * 179.71630 * 5 4 3 8 8 C 1.39619 * 120.00530 * 185.16848 * 7 5 4 9 9 C 1.39067 * 119.92207 * 33.43627 * 8 7 5 10 10 C 1.37771 * 120.06738 * 179.97438 * 9 8 7 11 11 C 1.39661 * 119.92737 * 359.97438 * 10 9 8 12 12 C 1.47732 * 120.06835 * 179.97438 * 11 10 9 13 13 N 1.31265 * 125.73131 * 180.02562 * 12 11 10 14 14 C 1.34204 * 108.63811 * 179.97438 * 13 12 11 15 15 C 1.50698 * 126.07544 * 180.02562 * 14 13 12 16 16 C 1.34495 * 107.84827 * 359.97438 * 14 13 12 17 17 C 1.50699 * 126.35655 * 179.97438 * 16 14 13 18 18 O 1.34443 * 125.73305 * 0.30395 * 12 11 10 19 19 C 1.39656 * 119.86139 * 0.25444 * 11 10 9 20 20 C 1.37769 * 119.92673 * 359.49541 * 19 11 10 21 21 S 1.75830 * 109.07759 * 359.57573 * 4 3 2 22 22 C 1.33855 * 122.44189 * 179.73010 * 2 1 3 23 23 C 1.50693 * 124.52695 * 359.96381 * 22 2 1 24 24 O 1.42901 * 109.46944 * 77.45659 * 23 22 2 25 25 Si 1.86301 * 109.47444 * 197.45651 * 23 22 2 26 26 H 1.48506 * 109.46741 * 60.00125 * 25 23 22 27 27 H 1.48501 * 109.46970 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46915 * 300.00136 * 25 23 22 29 29 H 1.09003 * 109.47330 * 263.69325 * 1 2 3 30 30 H 1.08999 * 109.47247 * 23.68969 * 1 2 3 31 31 H 1.09001 * 109.47219 * 143.69014 * 1 2 3 32 32 H 1.07999 * 123.35286 * 0.02562 * 3 2 1 33 33 H 0.97008 * 120.00059 * 5.17269 * 7 5 4 34 34 H 1.08000 * 119.96757 * 359.95807 * 9 8 7 35 35 H 1.07998 * 120.03283 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.46682 * 269.99749 * 15 14 13 37 37 H 1.08997 * 109.47593 * 29.99570 * 15 14 13 38 38 H 1.08997 * 109.47482 * 150.00156 * 15 14 13 39 39 H 1.09002 * 109.47123 * 90.00716 * 17 16 14 40 40 H 1.09002 * 109.47180 * 210.00314 * 17 16 14 41 41 H 1.08994 * 109.47499 * 330.00468 * 17 16 14 42 42 H 1.07994 * 120.03911 * 179.74802 * 19 11 10 43 43 H 1.07998 * 119.96705 * 180.27459 * 20 19 11 44 44 H 1.09004 * 109.47363 * 317.46030 * 23 22 2 45 45 H 0.96701 * 114.00292 * 60.00042 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9422 -0.0044 5 6 4.6231 1.9853 -0.0089 6 8 4.3002 3.1588 -0.0139 7 7 5.9273 1.6453 -0.0073 8 6 6.9067 2.6348 0.0974 9 6 6.6616 3.7761 0.8532 10 6 7.6262 4.7542 0.9590 11 6 8.8511 4.5982 0.3066 12 6 9.8874 5.6453 0.4174 13 7 11.0721 5.6141 -0.1469 14 6 11.7321 6.7362 0.1790 15 6 13.1265 7.1044 -0.2583 16 6 10.9276 7.4743 0.9644 17 6 11.2542 8.8160 1.5680 18 8 9.7774 6.7878 1.1174 19 6 9.0922 3.4531 -0.4556 20 6 8.1255 2.4763 -0.5531 21 16 3.8970 -0.7898 0.0037 22 6 2.2251 -1.1296 0.0053 23 6 1.6355 -2.5164 0.0126 24 8 1.1792 -2.8469 -1.3006 25 14 2.9348 -3.7409 0.5450 26 1 3.4089 -3.3974 1.9098 27 1 2.3539 -5.1075 0.5516 28 1 4.0772 -3.6937 -0.4025 29 1 -0.3634 -0.1129 1.0215 30 1 -0.3634 0.9411 -0.4129 31 1 -0.3634 -0.8281 -0.6085 32 1 1.8017 2.1448 0.0004 33 1 6.1855 0.7130 -0.0789 34 1 5.7142 3.8961 1.3576 35 1 7.4354 5.6402 1.5464 36 1 13.8466 6.7260 0.4673 37 1 13.3292 6.6645 -1.2347 38 1 13.2124 8.1890 -0.3236 39 1 10.9500 9.6067 0.8822 40 1 10.7214 8.9290 2.5122 41 1 12.3274 8.8827 1.7462 42 1 10.0368 3.3314 -0.9646 43 1 8.3129 1.5884 -1.1387 44 1 0.7969 -2.5511 0.7081 45 1 1.8742 -2.8359 -1.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001545016797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:21 Heat of formation + Delta-G solvation = 2.524602 kcal Electronic energy + Delta-G solvation = -29323.642009 eV Core-core repulsion = 25093.590615 eV Total energy + Delta-G solvation = -4230.051394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.17477 -41.72417 -40.14966 -39.37821 -37.58952 -36.17268 -36.10524 -34.05902 -32.66327 -32.10893 -31.07511 -30.08586 -29.99571 -27.41553 -26.16759 -24.80187 -24.13673 -23.67400 -22.50119 -21.58567 -21.41519 -20.44021 -19.56939 -18.87618 -18.25147 -17.71699 -17.65730 -17.38735 -16.77061 -16.59613 -16.36790 -16.19567 -15.75539 -15.54674 -15.15422 -14.88893 -14.87620 -14.66024 -14.45380 -14.39926 -14.35674 -14.28366 -14.09104 -13.84188 -13.60504 -13.37618 -13.31655 -13.21716 -13.06285 -13.00053 -12.57391 -12.54070 -12.42493 -12.33714 -12.02472 -11.77821 -11.53996 -11.39423 -11.17464 -10.72276 -10.06207 -10.02044 -9.88336 -9.58744 -8.77472 -0.83855 -0.35276 0.11594 0.35192 0.50425 0.78135 0.90060 1.12786 1.20075 1.33513 1.64154 1.71393 1.72698 1.78025 2.02347 2.79917 2.95102 3.19752 3.40916 3.51212 3.73608 3.82439 3.90324 3.92457 3.99190 4.15618 4.18966 4.23332 4.31467 4.34222 4.39787 4.43308 4.45493 4.51405 4.65748 4.68279 4.69954 4.70692 4.88121 4.89805 4.90646 4.99617 5.13299 5.16707 5.17747 5.23889 5.29751 5.32529 5.36587 5.50958 5.82875 6.07786 6.29006 6.81474 6.81979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.083 4.083 3 C -0.039 4.039 4 C -0.263 4.263 5 C 0.595 3.405 6 O -0.500 6.500 7 N -0.671 5.671 8 C 0.168 3.832 9 C -0.121 4.121 10 C -0.066 4.066 11 C -0.033 4.033 12 C 0.234 3.766 13 N -0.468 5.468 14 C -0.011 4.011 15 C -0.072 4.072 16 C -0.048 4.048 17 C -0.069 4.069 18 O -0.195 6.195 19 C -0.047 4.047 20 C -0.145 4.145 21 S 0.181 5.819 22 C -0.231 4.231 23 C -0.041 4.041 24 O -0.529 6.529 25 Si 0.891 3.109 26 H -0.234 1.234 27 H -0.224 1.224 28 H -0.231 1.231 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.411 0.589 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -2.523 1.107 2.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.096 4.096 3 C -0.073 4.073 4 C -0.383 4.383 5 C 0.383 3.617 6 O -0.376 6.376 7 N -0.315 5.315 8 C 0.073 3.927 9 C -0.141 4.141 10 C -0.086 4.086 11 C -0.035 4.035 12 C 0.031 3.969 13 N -0.197 5.197 14 C -0.132 4.132 15 C -0.129 4.129 16 C -0.101 4.101 17 C -0.125 4.125 18 O -0.082 6.082 19 C -0.067 4.067 20 C -0.165 4.165 21 S 0.451 5.549 22 C -0.350 4.350 23 C -0.154 4.154 24 O -0.334 6.334 25 Si 0.711 3.289 26 H -0.157 1.157 27 H -0.146 1.146 28 H -0.154 1.154 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.247 0.753 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.008 -3.756 1.344 4.467 hybrid contribution -1.249 1.348 -0.016 1.838 sum 0.759 -2.408 1.328 2.853 Atomic orbital electron populations 1.20630 0.88610 1.03844 1.02952 1.18747 0.98421 0.90570 1.01837 1.20778 0.90679 1.00353 0.95469 1.24343 0.97755 0.96650 1.19510 1.16997 0.81129 0.87759 0.75851 1.90893 1.81219 1.17955 1.47516 1.43330 1.04962 1.09996 1.73228 1.17836 0.88718 0.90303 0.95868 1.21047 1.00521 0.93451 0.99078 1.21107 0.91163 0.98945 0.97389 1.17252 0.91062 0.92010 1.03201 1.23576 0.93632 0.86358 0.93307 1.70546 1.03660 1.22438 1.23060 1.21554 0.99259 0.91568 1.00824 1.20143 0.88648 1.01721 1.02407 1.23336 0.84816 0.97889 1.04010 1.20312 1.03134 0.87942 1.01140 1.84447 1.37363 1.28687 1.57707 1.20934 0.99415 0.90725 0.95641 1.20823 0.93131 1.01120 1.01456 1.82995 1.04274 0.98580 1.69088 1.24415 0.97706 1.01239 1.11667 1.24413 1.07462 0.93653 0.89834 1.86555 1.38909 1.91287 1.16648 0.86311 0.78134 0.81604 0.82884 1.15710 1.14607 1.15375 0.90748 0.91046 0.90071 0.82380 0.75266 0.83851 0.84615 0.90548 0.90386 0.90549 0.89580 0.90130 0.88789 0.83778 0.84465 0.85335 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.15 9.60 36.01 0.35 0.50 16 2 C -0.08 0.02 5.78 -106.46 -0.62 -0.59 16 3 C -0.04 -0.02 9.78 -40.43 -0.40 -0.42 16 4 C -0.26 -0.20 6.45 -36.80 -0.24 -0.43 16 5 C 0.59 1.33 7.51 -12.92 -0.10 1.23 16 6 O -0.50 -2.66 14.51 5.18 0.08 -2.59 16 7 N -0.67 -0.19 5.32 -11.06 -0.06 -0.25 16 8 C 0.17 0.26 6.28 -83.70 -0.53 -0.27 16 9 C -0.12 -0.31 8.63 -39.44 -0.34 -0.65 16 10 C -0.07 -0.17 9.71 -39.22 -0.38 -0.55 16 11 C -0.03 -0.11 5.87 -104.96 -0.62 -0.73 16 12 C 0.23 1.14 7.89 -13.92 -0.11 1.03 16 13 N -0.47 -2.52 10.91 -7.99 -0.09 -2.61 16 14 C -0.01 -0.04 7.10 -82.88 -0.59 -0.63 16 15 C -0.07 -0.01 10.04 36.00 0.36 0.35 16 16 C -0.05 -0.14 7.38 -35.63 -0.26 -0.40 16 17 C -0.07 0.09 10.04 36.01 0.36 0.45 16 18 O -0.19 -0.90 10.52 3.89 0.04 -0.85 16 19 C -0.05 -0.09 9.68 -39.22 -0.38 -0.47 16 20 C -0.15 -0.06 9.94 -39.45 -0.39 -0.45 16 21 S 0.18 -0.24 19.42 -107.50 -2.09 -2.33 16 22 C -0.23 0.21 5.46 -35.85 -0.20 0.02 16 23 C -0.04 0.08 2.15 36.00 0.08 0.16 16 24 O -0.53 0.74 12.59 -35.23 -0.44 0.30 16 25 Si 0.89 -1.79 26.31 -169.99 -4.47 -6.26 16 26 H -0.23 0.29 7.11 56.52 0.40 0.69 16 27 H -0.22 0.20 7.11 56.52 0.40 0.61 16 28 H -0.23 0.53 7.11 56.52 0.40 0.93 16 29 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 30 H 0.07 -0.13 8.10 -51.93 -0.42 -0.55 16 31 H 0.08 -0.09 7.41 -51.93 -0.38 -0.48 16 32 H 0.16 0.05 8.06 -52.49 -0.42 -0.38 16 33 H 0.41 -1.01 7.94 -40.82 -0.32 -1.33 16 34 H 0.14 0.44 6.40 -52.49 -0.34 0.10 16 35 H 0.14 0.21 7.89 -52.49 -0.41 -0.21 16 36 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 37 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 38 H 0.08 -0.14 7.77 -51.93 -0.40 -0.54 16 39 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 40 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.09 -0.28 7.78 -51.93 -0.40 -0.69 16 42 H 0.14 0.18 7.83 -52.49 -0.41 -0.23 16 43 H 0.14 -0.31 8.06 -52.49 -0.42 -0.73 16 44 H 0.13 -0.36 7.74 -51.93 -0.40 -0.76 16 45 H 0.38 -1.67 8.70 45.56 0.40 -1.27 16 LS Contribution 394.55 15.07 5.95 5.95 Total: 0.00 -8.03 394.55 -9.94 -17.97 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: -4.86 Total: -7.47 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -3.99 Total: -1.86 kcal Atomic # 7 Polarization: -2.71 SS G_CDS: -0.15 Total: -2.85 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.33 Total: -3.15 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -4.47 Total: -6.26 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.09 Total: -2.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -8.03 -9.94 -17.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545016797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.495 kcal (2) G-P(sol) polarization free energy of solvation -8.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds