Wall clock time and date at job start Mon Mar 23 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37423 * 122.44863 * 2 1 4 4 C 1.36704 * 113.29518 * 180.20151 * 3 2 1 5 5 C 1.46533 * 125.46159 * 179.83702 * 4 3 2 6 6 O 1.21710 * 119.99778 * 359.72441 * 5 4 3 7 7 N 1.34774 * 120.00145 * 179.71630 * 5 4 3 8 8 C 1.39619 * 120.00530 * 185.16848 * 7 5 4 9 9 C 1.39067 * 119.92207 * 33.43627 * 8 7 5 10 10 C 1.37771 * 120.06738 * 179.97438 * 9 8 7 11 11 C 1.39661 * 119.92737 * 359.97438 * 10 9 8 12 12 C 1.47732 * 120.06835 * 179.97438 * 11 10 9 13 13 N 1.31265 * 125.73131 * 180.02562 * 12 11 10 14 14 C 1.34204 * 108.63811 * 179.97438 * 13 12 11 15 15 C 1.50698 * 126.07544 * 180.02562 * 14 13 12 16 16 C 1.34495 * 107.84827 * 359.97438 * 14 13 12 17 17 C 1.50699 * 126.35655 * 179.97438 * 16 14 13 18 18 O 1.34443 * 125.73305 * 0.30395 * 12 11 10 19 19 C 1.39656 * 119.86139 * 0.25444 * 11 10 9 20 20 C 1.37769 * 119.92673 * 359.49541 * 19 11 10 21 21 S 1.75830 * 109.07759 * 359.57573 * 4 3 2 22 22 C 1.33855 * 122.44189 * 179.73010 * 2 1 3 23 23 C 1.50693 * 124.52695 * 359.96381 * 22 2 1 24 24 O 1.42901 * 109.46944 * 77.45659 * 23 22 2 25 25 Si 1.86301 * 109.47444 * 197.45651 * 23 22 2 26 26 H 1.48506 * 109.46741 * 60.00125 * 25 23 22 27 27 H 1.48501 * 109.46970 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46915 * 300.00136 * 25 23 22 29 29 H 1.09003 * 109.47330 * 263.69325 * 1 2 3 30 30 H 1.08999 * 109.47247 * 23.68969 * 1 2 3 31 31 H 1.09001 * 109.47219 * 143.69014 * 1 2 3 32 32 H 1.07999 * 123.35286 * 0.02562 * 3 2 1 33 33 H 0.97008 * 120.00059 * 5.17269 * 7 5 4 34 34 H 1.08000 * 119.96757 * 359.95807 * 9 8 7 35 35 H 1.07998 * 120.03283 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.46682 * 269.99749 * 15 14 13 37 37 H 1.08997 * 109.47593 * 29.99570 * 15 14 13 38 38 H 1.08997 * 109.47482 * 150.00156 * 15 14 13 39 39 H 1.09002 * 109.47123 * 90.00716 * 17 16 14 40 40 H 1.09002 * 109.47180 * 210.00314 * 17 16 14 41 41 H 1.08994 * 109.47499 * 330.00468 * 17 16 14 42 42 H 1.07994 * 120.03911 * 179.74802 * 19 11 10 43 43 H 1.07998 * 119.96705 * 180.27459 * 20 19 11 44 44 H 1.09004 * 109.47363 * 317.46030 * 23 22 2 45 45 H 0.96701 * 114.00292 * 60.00042 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9422 -0.0044 5 6 4.6231 1.9853 -0.0089 6 8 4.3002 3.1588 -0.0139 7 7 5.9273 1.6453 -0.0073 8 6 6.9067 2.6348 0.0974 9 6 6.6616 3.7761 0.8532 10 6 7.6262 4.7542 0.9590 11 6 8.8511 4.5982 0.3066 12 6 9.8874 5.6453 0.4174 13 7 11.0721 5.6141 -0.1469 14 6 11.7321 6.7362 0.1790 15 6 13.1265 7.1044 -0.2583 16 6 10.9276 7.4743 0.9644 17 6 11.2542 8.8160 1.5680 18 8 9.7774 6.7878 1.1174 19 6 9.0922 3.4531 -0.4556 20 6 8.1255 2.4763 -0.5531 21 16 3.8970 -0.7898 0.0037 22 6 2.2251 -1.1296 0.0053 23 6 1.6355 -2.5164 0.0126 24 8 1.1792 -2.8469 -1.3006 25 14 2.9348 -3.7409 0.5450 26 1 3.4089 -3.3974 1.9098 27 1 2.3539 -5.1075 0.5516 28 1 4.0772 -3.6937 -0.4025 29 1 -0.3634 -0.1129 1.0215 30 1 -0.3634 0.9411 -0.4129 31 1 -0.3634 -0.8281 -0.6085 32 1 1.8017 2.1448 0.0004 33 1 6.1855 0.7130 -0.0789 34 1 5.7142 3.8961 1.3576 35 1 7.4354 5.6402 1.5464 36 1 13.8466 6.7260 0.4673 37 1 13.3292 6.6645 -1.2347 38 1 13.2124 8.1890 -0.3236 39 1 10.9500 9.6067 0.8822 40 1 10.7214 8.9290 2.5122 41 1 12.3274 8.8827 1.7462 42 1 10.0368 3.3314 -0.9646 43 1 8.3129 1.5884 -1.1387 44 1 0.7969 -2.5511 0.7081 45 1 1.8742 -2.8359 -1.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001545016797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:20 Heat of formation + Delta-G solvation = 3.741760 kcal Electronic energy + Delta-G solvation = -29323.589229 eV Core-core repulsion = 25093.590615 eV Total energy + Delta-G solvation = -4229.998614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.110 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.40585 -41.86070 -40.15704 -39.46219 -37.47953 -36.36418 -36.30917 -34.17513 -32.66182 -32.24359 -31.14142 -30.02703 -29.96865 -27.47577 -26.19568 -24.81834 -24.23730 -23.78877 -22.67190 -21.71868 -21.57891 -20.39475 -19.58629 -18.96817 -18.40720 -17.96501 -17.58940 -17.38818 -16.91907 -16.58922 -16.46812 -16.12160 -15.81851 -15.64228 -15.21652 -14.96917 -14.83773 -14.61677 -14.53082 -14.37551 -14.36339 -14.28419 -14.14244 -13.82212 -13.56067 -13.47257 -13.24316 -13.13708 -13.06421 -12.98868 -12.57431 -12.45279 -12.43459 -12.24947 -12.20410 -11.74869 -11.66620 -11.62851 -11.35299 -10.57278 -10.17978 -10.11953 -9.93183 -9.50620 -8.93442 -0.87611 -0.51272 0.15880 0.21914 0.56228 0.60275 1.04343 1.11575 1.35153 1.46558 1.48466 1.54392 1.67506 1.87381 1.90486 2.64041 2.78717 3.35953 3.41503 3.62691 3.65628 3.74225 3.80076 3.81366 4.03034 4.10467 4.14373 4.24256 4.26007 4.31621 4.44498 4.45623 4.58772 4.59446 4.70870 4.72344 4.75103 4.80157 4.83132 4.87135 4.94672 4.96389 5.02897 5.05756 5.06248 5.21841 5.24651 5.30911 5.38066 5.38693 5.69461 6.03995 6.57686 6.60014 6.72186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.094 4.094 3 C -0.046 4.046 4 C -0.282 4.282 5 C 0.594 3.406 6 O -0.540 6.540 7 N -0.658 5.658 8 C 0.162 3.838 9 C -0.131 4.131 10 C -0.071 4.071 11 C -0.048 4.048 12 C 0.216 3.784 13 N -0.490 5.490 14 C -0.034 4.034 15 C -0.069 4.069 16 C -0.053 4.053 17 C -0.068 4.068 18 O -0.209 6.209 19 C -0.050 4.050 20 C -0.132 4.132 21 S 0.223 5.777 22 C -0.231 4.231 23 C -0.039 4.039 24 O -0.541 6.541 25 Si 0.911 3.089 26 H -0.244 1.244 27 H -0.240 1.240 28 H -0.222 1.222 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.425 0.575 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.149 0.851 43 H 0.170 0.830 44 H 0.137 0.863 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -3.378 0.844 3.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.080 4.080 4 C -0.402 4.402 5 C 0.383 3.617 6 O -0.418 6.418 7 N -0.304 5.304 8 C 0.067 3.933 9 C -0.151 4.151 10 C -0.091 4.091 11 C -0.050 4.050 12 C 0.014 3.986 13 N -0.220 5.220 14 C -0.155 4.155 15 C -0.126 4.126 16 C -0.106 4.106 17 C -0.124 4.124 18 O -0.097 6.097 19 C -0.070 4.070 20 C -0.152 4.152 21 S 0.493 5.507 22 C -0.350 4.350 23 C -0.152 4.152 24 O -0.348 6.348 25 Si 0.731 3.269 26 H -0.167 1.167 27 H -0.163 1.163 28 H -0.145 1.145 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.264 0.736 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.167 0.833 43 H 0.187 0.813 44 H 0.155 0.845 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.707 -4.636 1.069 5.474 hybrid contribution -1.456 1.573 0.068 2.144 sum 1.251 -3.063 1.138 3.499 Atomic orbital electron populations 1.20634 0.87915 1.03850 1.03438 1.18841 0.99043 0.90399 1.02384 1.20865 0.90944 1.00633 0.95596 1.24288 0.97439 0.97795 1.20721 1.17233 0.81772 0.87560 0.75100 1.90871 1.81852 1.19578 1.49483 1.43218 1.04206 1.10549 1.72400 1.17955 0.89352 0.90253 0.95748 1.21038 1.00125 0.94190 0.99737 1.21115 0.91142 0.99173 0.97657 1.17427 0.91057 0.92454 1.04087 1.23902 0.94063 0.86874 0.93777 1.70520 1.04132 1.23593 1.23720 1.22157 1.00665 0.91311 1.01358 1.20251 0.86940 1.03221 1.02195 1.24150 0.83990 0.98880 1.03538 1.20538 1.04607 0.85941 1.01328 1.84446 1.38367 1.28929 1.57918 1.21073 0.99959 0.90568 0.95399 1.21085 0.91902 1.01598 1.00627 1.82769 1.03611 0.96299 1.67990 1.24669 0.98140 1.01626 1.10592 1.24481 1.07890 0.92828 0.89964 1.86533 1.39961 1.91190 1.17099 0.86037 0.78009 0.80436 0.82383 1.16735 1.16278 1.14460 0.89960 0.90910 0.90227 0.82920 0.73586 0.84811 0.84473 0.89635 0.90914 0.88255 0.88276 0.89638 0.86620 0.83337 0.81265 0.84550 0.76006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.29 9.60 71.24 0.68 0.97 16 2 C -0.09 0.04 5.78 -21.05 -0.12 -0.08 16 3 C -0.05 -0.10 9.78 21.72 0.21 0.12 16 4 C -0.28 -0.54 6.45 24.07 0.16 -0.39 16 5 C 0.59 3.22 7.51 86.41 0.65 3.87 16 6 O -0.54 -6.81 14.51 -4.38 -0.06 -6.87 16 7 N -0.66 -0.43 5.32 -307.11 -1.63 -2.06 16 8 C 0.16 0.58 6.28 38.30 0.24 0.82 16 9 C -0.13 -0.91 8.63 22.36 0.19 -0.71 16 10 C -0.07 -0.51 9.71 22.50 0.22 -0.29 16 11 C -0.05 -0.40 5.87 -20.08 -0.12 -0.52 16 12 C 0.22 2.51 7.89 87.29 0.69 3.20 16 13 N -0.49 -5.96 10.91 -293.22 -3.20 -9.16 16 14 C -0.03 -0.26 7.10 41.34 0.29 0.03 16 15 C -0.07 -0.01 10.04 71.24 0.72 0.71 16 16 C -0.05 -0.33 7.38 24.83 0.18 -0.15 16 17 C -0.07 0.22 10.04 71.24 0.71 0.94 16 18 O -0.21 -2.27 10.52 -8.99 -0.09 -2.37 16 19 C -0.05 -0.21 9.68 22.50 0.22 0.00 16 20 C -0.13 -0.06 9.94 22.36 0.22 0.16 16 21 S 0.22 -0.78 19.42 -56.49 -1.10 -1.88 16 22 C -0.23 0.57 5.46 24.69 0.13 0.70 16 23 C -0.04 0.18 2.15 71.23 0.15 0.34 16 24 O -0.54 2.00 12.59 -148.98 -1.88 0.12 16 25 Si 0.91 -4.44 26.31 68.60 1.80 -2.64 16 26 H -0.24 0.78 7.11 99.48 0.71 1.48 16 27 H -0.24 0.50 7.11 99.48 0.71 1.20 16 28 H -0.22 1.40 7.11 99.48 0.71 2.11 16 29 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.07 -0.24 8.10 -2.39 -0.02 -0.26 16 31 H 0.08 -0.20 7.41 -2.39 -0.02 -0.21 16 32 H 0.15 0.37 8.06 -2.91 -0.02 0.34 16 33 H 0.42 -2.44 7.94 -92.70 -0.74 -3.17 16 34 H 0.13 1.16 6.40 -2.91 -0.02 1.14 16 35 H 0.14 0.78 7.89 -2.91 -0.02 0.76 16 36 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 37 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.10 -0.49 7.77 -2.39 -0.02 -0.51 16 39 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.12 -0.89 7.78 -2.39 -0.02 -0.91 16 42 H 0.15 0.46 7.83 -2.91 -0.02 0.44 16 43 H 0.17 -1.09 8.06 -2.91 -0.02 -1.11 16 44 H 0.14 -0.88 7.74 -2.39 -0.02 -0.90 16 45 H 0.39 -3.87 8.70 -74.06 -0.64 -4.52 16 Total: 0.00 -20.44 394.55 -0.28 -20.72 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: 0.44 Total: -5.57 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.44 Total: 9.71 kcal Atomic # 7 Polarization: -6.39 SS G_CDS: -4.83 Total: -11.22 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -2.03 Total: -9.12 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: 1.80 Total: -2.64 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -1.10 Total: -1.88 kcal Total: -20.44 -0.28 -20.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545016797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.459 kcal (2) G-P(sol) polarization free energy of solvation -20.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds