Wall clock time and date at job start Mon Mar 23 2020 11:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.36581 * 126.10349 * 269.71684 * 3 2 1 5 5 C 1.47934 * 126.28102 * 359.97438 * 4 3 2 6 6 C 1.39949 * 120.92506 * 314.72021 * 5 4 3 7 7 C 1.37912 * 119.00252 * 179.75485 * 6 5 4 8 8 N 1.31954 * 120.89809 * 0.53473 * 7 6 5 9 9 C 1.31953 * 122.04407 * 359.73720 * 8 7 6 10 10 C 1.37927 * 120.89958 * 359.97438 * 9 8 7 11 11 N 1.36343 * 107.42949 * 179.84298 * 4 3 2 12 12 N 1.40061 * 107.84359 * 0.41670 * 11 4 3 13 13 C 1.31291 * 108.47792 * 359.73935 * 12 11 4 14 14 N 1.40101 * 125.77523 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99909 * 0.04717 * 14 13 12 16 16 O 1.21723 * 119.99981 * 359.97438 * 15 14 13 17 17 C 1.46545 * 120.00066 * 179.97438 * 15 14 13 18 18 S 1.75833 * 125.46011 * 359.69761 * 17 15 14 19 19 C 1.70611 * 91.56338 * 179.97438 * 18 17 15 20 20 C 1.50703 * 124.52237 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.46969 * 210.30739 * 20 19 18 22 22 Si 1.86292 * 109.47155 * 330.31039 * 20 19 18 23 23 H 1.48505 * 109.47395 * 59.99939 * 22 20 19 24 24 H 1.48496 * 109.47269 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47033 * 299.99965 * 22 20 19 26 26 C 1.33848 * 110.95517 * 0.30433 * 19 18 17 27 27 C 1.50708 * 122.44904 * 179.73886 * 26 19 18 28 28 C 1.36696 * 125.46041 * 179.97438 * 17 15 14 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 34 34 H 1.08006 * 120.49932 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.55685 * 180.27201 * 7 6 5 36 36 H 1.07996 * 119.55375 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.49571 * 180.02562 * 10 9 8 38 38 H 0.97005 * 126.06992 * 180.19890 * 11 4 3 39 39 H 0.97000 * 119.99947 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.47087 * 90.31027 * 20 19 18 41 41 H 0.96696 * 113.99762 * 60.00612 * 21 20 19 42 42 H 1.08996 * 109.46884 * 270.00634 * 27 26 19 43 43 H 1.09001 * 109.46466 * 30.00131 * 27 26 19 44 44 H 1.08998 * 109.47056 * 149.99366 * 27 26 19 45 45 H 1.08002 * 123.35381 * 0.02562 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3058 2.1778 -1.1035 5 6 2.1636 1.7532 -2.5134 6 6 2.6294 0.5040 -2.9388 7 6 2.4718 0.1465 -4.2615 8 7 1.9010 0.9680 -5.1220 9 6 1.4531 2.1564 -4.7640 10 6 1.5647 2.5920 -3.4601 11 7 2.7309 3.3974 -0.6670 12 7 2.7247 3.3781 0.7335 13 6 2.3078 2.1985 1.1315 14 7 2.1635 1.7872 2.4630 15 6 2.4633 2.6354 3.4665 16 8 2.8600 3.7586 3.2161 17 6 2.3118 2.2054 4.8593 18 16 1.7458 0.6253 5.3832 19 6 1.9062 1.0604 7.0251 20 6 1.5839 0.1532 8.1845 21 8 1.1458 0.9377 9.2956 22 14 0.2338 -1.0312 7.6896 23 1 0.6891 -1.8464 6.5349 24 1 -0.0833 -1.9256 8.8318 25 1 -0.9802 -0.2662 7.3074 26 6 2.3506 2.3172 7.1460 27 6 2.5799 2.9684 8.4856 28 6 2.5829 2.9703 5.9593 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1014 -0.1718 -2.2409 35 1 2.8240 -0.8173 -4.5985 36 1 0.9921 2.7963 -5.5017 37 1 1.1954 3.5658 -3.1741 38 1 2.9942 4.1445 -1.2269 39 1 1.8474 0.8922 2.6626 40 1 2.4751 -0.4084 8.4650 41 1 0.3550 1.4647 9.1175 42 1 1.6663 3.4680 8.8078 43 1 2.8555 2.2082 9.2166 44 1 3.3837 3.6996 8.4013 45 1 2.9421 3.9872 5.9016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632476045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:25 Heat of formation + Delta-G solvation = 69.566956 kcal Electronic energy + Delta-G solvation = -30314.177424 eV Core-core repulsion = 26119.325955 eV Total energy + Delta-G solvation = -4194.851469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.117 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.68776 -41.11435 -40.62307 -39.81152 -37.44548 -36.19764 -35.39279 -33.94484 -32.37991 -32.34704 -30.92920 -30.30136 -29.71517 -26.86409 -25.57483 -24.92506 -24.53953 -23.87766 -22.93974 -21.37137 -20.97077 -20.20684 -19.39991 -19.05261 -17.97719 -17.54369 -17.33881 -17.18890 -17.00216 -16.66962 -16.56026 -16.39131 -16.10754 -15.56040 -15.48461 -15.35631 -14.97763 -14.90720 -14.79743 -14.71441 -14.54428 -14.17165 -14.00782 -13.53760 -13.45313 -13.17982 -13.07315 -12.87667 -12.68215 -12.59751 -12.39425 -12.25801 -12.19691 -12.07297 -11.85270 -11.64931 -11.23038 -10.98176 -10.78934 -10.61236 -10.31342 -9.81422 -9.66393 -9.50047 -9.34561 -0.72571 -0.33734 -0.00159 0.17808 0.59237 0.83216 0.90948 1.16553 1.24173 1.31656 1.33078 1.58547 1.75559 2.02718 2.29192 2.69448 3.17006 3.18736 3.36444 3.38099 3.51637 3.69537 3.73158 3.81837 3.90538 3.96691 4.04947 4.21216 4.21973 4.34441 4.36339 4.39764 4.43402 4.53786 4.55204 4.64366 4.72706 4.76051 4.80837 4.86884 4.91958 4.99239 5.02119 5.13309 5.23510 5.33668 5.42218 5.50313 5.56413 5.81179 6.20255 6.30006 6.65531 6.85978 6.99450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.218 4.218 4 C 0.136 3.864 5 C 0.012 3.988 6 C -0.146 4.146 7 C 0.106 3.894 8 N -0.478 5.478 9 C 0.107 3.893 10 C -0.159 4.159 11 N -0.462 5.462 12 N -0.253 5.253 13 C 0.305 3.695 14 N -0.636 5.636 15 C 0.587 3.413 16 O -0.475 6.475 17 C -0.262 4.262 18 S 0.185 5.815 19 C -0.232 4.232 20 C -0.040 4.040 21 O -0.528 6.528 22 Si 0.903 3.097 23 H -0.231 1.231 24 H -0.229 1.229 25 H -0.239 1.239 26 C -0.091 4.091 27 C -0.096 4.096 28 C -0.039 4.039 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.445 0.555 39 H 0.417 0.583 40 H 0.129 0.871 41 H 0.379 0.621 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 -4.412 0.633 4.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.232 4.232 4 C 0.008 3.992 5 C 0.002 3.998 6 C -0.167 4.167 7 C -0.050 4.050 8 N -0.187 5.187 9 C -0.049 4.049 10 C -0.180 4.180 11 N -0.173 5.173 12 N -0.082 5.082 13 C 0.048 3.952 14 N -0.287 5.287 15 C 0.373 3.627 16 O -0.345 6.345 17 C -0.382 4.382 18 S 0.453 5.547 19 C -0.351 4.351 20 C -0.152 4.152 21 O -0.333 6.333 22 Si 0.722 3.278 23 H -0.154 1.154 24 H -0.151 1.151 25 H -0.161 1.161 26 C -0.104 4.104 27 C -0.155 4.155 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.155 0.845 38 H 0.291 0.709 39 H 0.255 0.745 40 H 0.147 0.853 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.129 -4.885 -0.657 5.369 hybrid contribution 0.194 1.411 1.038 1.762 sum -1.935 -3.474 0.381 3.995 Atomic orbital electron populations 1.21776 0.94724 1.01895 1.02214 1.20009 0.95989 0.90187 1.02980 1.19593 1.15419 0.99197 0.89002 1.19030 1.00966 0.87036 0.92207 1.18314 0.97407 0.94722 0.89339 1.22267 1.00439 0.96113 0.97879 1.22817 0.94173 0.99003 0.89022 1.67720 1.08813 1.04022 1.38181 1.22775 0.95245 0.92590 0.94319 1.22270 1.00460 1.00938 0.94296 1.46428 1.54034 1.11998 1.04866 1.78005 1.25368 1.17363 0.87503 1.18765 0.99445 0.92365 0.84586 1.42709 1.66958 1.17451 1.01535 1.17058 0.77739 0.84859 0.83028 1.90970 1.42113 1.18362 1.83103 1.24299 1.17353 1.00025 0.96508 1.82981 1.62043 1.12311 0.97364 1.24506 1.09908 1.00809 0.99908 1.24421 1.07684 0.97372 0.85772 1.86547 1.49214 1.62657 1.34879 0.86233 0.78929 0.80008 0.82619 1.15438 1.15076 1.16131 1.18716 1.01222 0.93241 0.97178 1.20658 1.02078 1.00702 0.92013 1.20763 0.96185 1.00885 0.89383 0.92014 0.92752 0.92614 0.90342 0.91185 0.83817 0.81952 0.82083 0.84504 0.70900 0.74546 0.85340 0.77322 0.90956 0.89408 0.91805 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 9.89 37.16 0.37 0.59 16 2 C -0.05 0.08 6.03 -27.88 -0.17 -0.08 16 3 C -0.22 -0.22 5.37 -104.54 -0.56 -0.79 16 4 C 0.14 0.11 6.71 -82.49 -0.55 -0.44 16 5 C 0.01 -0.01 5.71 -104.65 -0.60 -0.60 16 6 C -0.15 0.18 8.64 -39.06 -0.34 -0.16 16 7 C 0.11 -0.07 11.17 -17.62 -0.20 -0.27 16 8 N -0.48 -0.58 10.35 -13.36 -0.14 -0.72 16 9 C 0.11 -0.05 11.17 -17.61 -0.20 -0.24 16 10 C -0.16 0.17 9.89 -39.06 -0.39 -0.21 16 11 N -0.46 -0.78 7.42 33.27 0.25 -0.54 16 12 N -0.25 -1.30 10.88 31.36 0.34 -0.96 16 13 C 0.30 1.01 7.75 -154.53 -1.20 -0.19 16 14 N -0.64 -1.19 5.44 -12.43 -0.07 -1.26 16 15 C 0.59 2.29 7.75 -12.92 -0.10 2.19 16 16 O -0.47 -3.65 15.54 5.17 0.08 -3.57 16 17 C -0.26 -0.43 6.45 -36.79 -0.24 -0.67 16 18 S 0.18 -0.16 19.78 -107.50 -2.13 -2.29 16 19 C -0.23 0.17 5.54 -35.85 -0.20 -0.03 16 20 C -0.04 0.08 2.76 36.01 0.10 0.18 16 21 O -0.53 1.01 9.85 -35.23 -0.35 0.66 16 22 Si 0.90 -1.91 26.59 -169.99 -4.52 -6.43 16 23 H -0.23 0.50 7.10 56.52 0.40 0.90 16 24 H -0.23 0.23 7.11 56.52 0.40 0.63 16 25 H -0.24 0.34 7.11 56.52 0.40 0.75 16 26 C -0.09 0.00 5.75 -106.45 -0.61 -0.62 16 27 C -0.10 0.11 8.67 36.01 0.31 0.42 16 28 C -0.04 -0.05 9.80 -40.43 -0.40 -0.45 16 29 H 0.06 -0.15 8.14 -51.93 -0.42 -0.58 16 30 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.05 -0.02 8.14 -51.93 -0.42 -0.45 16 32 H 0.08 -0.19 5.33 -51.93 -0.28 -0.47 16 33 H 0.07 -0.20 7.67 -51.93 -0.40 -0.60 16 34 H 0.14 -0.42 6.66 -52.48 -0.35 -0.77 16 35 H 0.16 -0.49 8.06 -52.49 -0.42 -0.91 16 36 H 0.16 -0.43 8.06 -52.49 -0.42 -0.85 16 37 H 0.14 -0.38 8.06 -52.49 -0.42 -0.80 16 38 H 0.45 -0.39 8.96 -182.62 -1.64 -2.03 16 39 H 0.42 -0.48 7.28 -40.82 -0.30 -0.78 16 40 H 0.13 -0.39 7.96 -51.93 -0.41 -0.80 16 41 H 0.38 -1.74 8.66 45.56 0.39 -1.34 16 42 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 43 H 0.09 -0.07 6.42 -51.93 -0.33 -0.40 16 44 H 0.06 -0.07 8.13 -51.93 -0.42 -0.50 16 45 H 0.16 0.21 8.06 -52.49 -0.42 -0.22 16 LS Contribution 388.13 15.07 5.85 5.85 Total: 0.00 -9.33 388.13 -11.55 -20.89 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: -5.91 Total: -10.27 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -4.96 Total: -1.37 kcal Atomic # 7 Polarization: -3.86 SS G_CDS: 0.38 Total: -3.47 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: -0.27 Total: -2.91 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: -4.52 Total: -6.43 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.13 Total: -2.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -9.33 -11.55 -20.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632476045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.455 kcal (2) G-P(sol) polarization free energy of solvation -9.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds