Wall clock time and date at job start Mon Mar 23 2020 11:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.36581 * 126.10349 * 269.71684 * 3 2 1 5 5 C 1.47934 * 126.28102 * 359.97438 * 4 3 2 6 6 C 1.39949 * 120.92506 * 314.72021 * 5 4 3 7 7 C 1.37912 * 119.00252 * 179.75485 * 6 5 4 8 8 N 1.31954 * 120.89809 * 0.53473 * 7 6 5 9 9 C 1.31953 * 122.04407 * 359.73720 * 8 7 6 10 10 C 1.37927 * 120.89958 * 359.97438 * 9 8 7 11 11 N 1.36343 * 107.42949 * 179.84298 * 4 3 2 12 12 N 1.40061 * 107.84359 * 0.41670 * 11 4 3 13 13 C 1.31291 * 108.47792 * 359.73935 * 12 11 4 14 14 N 1.40101 * 125.77523 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99909 * 0.04717 * 14 13 12 16 16 O 1.21723 * 119.99981 * 359.97438 * 15 14 13 17 17 C 1.46545 * 120.00066 * 179.97438 * 15 14 13 18 18 S 1.75833 * 125.46011 * 359.69761 * 17 15 14 19 19 C 1.70611 * 91.56338 * 179.97438 * 18 17 15 20 20 C 1.50703 * 124.52237 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.46969 * 210.30739 * 20 19 18 22 22 Si 1.86292 * 109.47155 * 330.31039 * 20 19 18 23 23 H 1.48505 * 109.47395 * 59.99939 * 22 20 19 24 24 H 1.48496 * 109.47269 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47033 * 299.99965 * 22 20 19 26 26 C 1.33848 * 110.95517 * 0.30433 * 19 18 17 27 27 C 1.50708 * 122.44904 * 179.73886 * 26 19 18 28 28 C 1.36696 * 125.46041 * 179.97438 * 17 15 14 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 34 34 H 1.08006 * 120.49932 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.55685 * 180.27201 * 7 6 5 36 36 H 1.07996 * 119.55375 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.49571 * 180.02562 * 10 9 8 38 38 H 0.97005 * 126.06992 * 180.19890 * 11 4 3 39 39 H 0.97000 * 119.99947 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.47087 * 90.31027 * 20 19 18 41 41 H 0.96696 * 113.99762 * 60.00612 * 21 20 19 42 42 H 1.08996 * 109.46884 * 270.00634 * 27 26 19 43 43 H 1.09001 * 109.46466 * 30.00131 * 27 26 19 44 44 H 1.08998 * 109.47056 * 149.99366 * 27 26 19 45 45 H 1.08002 * 123.35381 * 0.02562 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3058 2.1778 -1.1035 5 6 2.1636 1.7532 -2.5134 6 6 2.6294 0.5040 -2.9388 7 6 2.4718 0.1465 -4.2615 8 7 1.9010 0.9680 -5.1220 9 6 1.4531 2.1564 -4.7640 10 6 1.5647 2.5920 -3.4601 11 7 2.7309 3.3974 -0.6670 12 7 2.7247 3.3781 0.7335 13 6 2.3078 2.1985 1.1315 14 7 2.1635 1.7872 2.4630 15 6 2.4633 2.6354 3.4665 16 8 2.8600 3.7586 3.2161 17 6 2.3118 2.2054 4.8593 18 16 1.7458 0.6253 5.3832 19 6 1.9062 1.0604 7.0251 20 6 1.5839 0.1532 8.1845 21 8 1.1458 0.9377 9.2956 22 14 0.2338 -1.0312 7.6896 23 1 0.6891 -1.8464 6.5349 24 1 -0.0833 -1.9256 8.8318 25 1 -0.9802 -0.2662 7.3074 26 6 2.3506 2.3172 7.1460 27 6 2.5799 2.9684 8.4856 28 6 2.5829 2.9703 5.9593 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1014 -0.1718 -2.2409 35 1 2.8240 -0.8173 -4.5985 36 1 0.9921 2.7963 -5.5017 37 1 1.1954 3.5658 -3.1741 38 1 2.9942 4.1445 -1.2269 39 1 1.8474 0.8922 2.6626 40 1 2.4751 -0.4084 8.4650 41 1 0.3550 1.4647 9.1175 42 1 1.6663 3.4680 8.8078 43 1 2.8555 2.2082 9.2166 44 1 3.3837 3.6996 8.4013 45 1 2.9421 3.9872 5.9016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632476045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:23 Heat of formation + Delta-G solvation = 70.670141 kcal Electronic energy + Delta-G solvation = -30314.129586 eV Core-core repulsion = 26119.325955 eV Total energy + Delta-G solvation = -4194.803631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.117 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.79604 -41.17001 -40.67691 -39.83043 -37.34202 -36.40445 -35.37843 -33.95112 -32.37285 -32.26700 -31.01986 -30.21563 -29.73993 -26.92737 -25.54950 -24.87960 -24.46761 -23.80292 -23.00336 -21.55469 -21.00936 -20.17410 -19.44646 -19.06829 -17.97315 -17.53837 -17.32939 -17.23277 -16.91620 -16.78029 -16.53830 -16.32368 -16.10985 -15.63472 -15.59130 -15.29379 -14.88925 -14.85744 -14.75653 -14.58436 -14.51165 -14.11650 -13.99541 -13.48798 -13.36040 -13.15394 -13.01553 -12.77993 -12.62936 -12.49067 -12.41590 -12.28557 -12.12309 -12.00725 -11.79503 -11.69393 -11.35203 -11.09935 -10.67198 -10.55065 -10.20184 -9.91383 -9.72013 -9.48618 -9.39208 -0.78999 -0.30752 0.10937 0.17884 0.60309 0.74090 0.97504 1.15312 1.23968 1.41025 1.46185 1.52104 1.90986 1.94895 2.10488 2.77253 3.16773 3.32291 3.36683 3.52426 3.63269 3.72193 3.81156 3.92314 3.93954 4.05078 4.07471 4.23851 4.25997 4.39067 4.48888 4.54469 4.55279 4.58523 4.59528 4.76719 4.79162 4.83894 4.91748 4.92598 4.99394 5.06197 5.13277 5.22235 5.34550 5.36640 5.46321 5.48929 5.62379 5.72432 6.17649 6.49041 6.61280 6.82713 6.94900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.219 4.219 4 C 0.141 3.859 5 C 0.003 3.997 6 C -0.141 4.141 7 C 0.099 3.901 8 N -0.507 5.507 9 C 0.097 3.903 10 C -0.158 4.158 11 N -0.460 5.460 12 N -0.302 5.302 13 C 0.290 3.710 14 N -0.625 5.625 15 C 0.586 3.414 16 O -0.524 6.524 17 C -0.286 4.286 18 S 0.231 5.769 19 C -0.227 4.227 20 C -0.038 4.038 21 O -0.536 6.536 22 Si 0.925 3.075 23 H -0.225 1.225 24 H -0.244 1.244 25 H -0.248 1.248 26 C -0.102 4.102 27 C -0.092 4.092 28 C -0.045 4.045 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.150 0.850 38 H 0.452 0.548 39 H 0.430 0.570 40 H 0.142 0.858 41 H 0.390 0.610 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -6.350 0.807 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 C -0.233 4.233 4 C 0.013 3.987 5 C -0.007 4.007 6 C -0.162 4.162 7 C -0.057 4.057 8 N -0.216 5.216 9 C -0.059 4.059 10 C -0.178 4.178 11 N -0.172 5.172 12 N -0.132 5.132 13 C 0.035 3.965 14 N -0.276 5.276 15 C 0.373 3.627 16 O -0.398 6.398 17 C -0.406 4.406 18 S 0.500 5.500 19 C -0.347 4.347 20 C -0.151 4.151 21 O -0.343 6.343 22 Si 0.745 3.255 23 H -0.149 1.149 24 H -0.167 1.167 25 H -0.171 1.171 26 C -0.114 4.114 27 C -0.151 4.151 28 C -0.079 4.079 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.195 0.805 37 H 0.168 0.832 38 H 0.300 0.700 39 H 0.270 0.730 40 H 0.159 0.841 41 H 0.240 0.760 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.597 -6.853 -0.496 7.346 hybrid contribution 0.300 1.976 0.984 2.228 sum -2.298 -4.877 0.488 5.413 Atomic orbital electron populations 1.21754 0.94710 1.02551 1.01355 1.20128 0.95903 0.88710 1.04415 1.19884 1.15072 1.00272 0.88038 1.19272 1.00061 0.86532 0.92875 1.18364 0.98235 0.95417 0.88684 1.22441 0.99816 0.95887 0.98035 1.23187 0.93856 0.99607 0.89071 1.67727 1.09749 1.04893 1.39260 1.23078 0.95303 0.92550 0.94934 1.22413 1.00005 1.01377 0.94014 1.46414 1.54019 1.12760 1.04026 1.77914 1.27119 1.18985 0.89213 1.19061 0.99561 0.92490 0.85428 1.42631 1.66225 1.17769 1.00983 1.17400 0.76829 0.84396 0.84049 1.90933 1.44561 1.20372 1.83971 1.24202 1.19045 1.01969 0.95413 1.82739 1.60715 1.09895 0.96683 1.24819 1.08489 1.00719 1.00658 1.24529 1.08312 0.96977 0.85247 1.86527 1.50018 1.62867 1.34927 0.85928 0.78238 0.79299 0.82024 1.14866 1.16670 1.17067 1.18762 1.01899 0.93643 0.97089 1.20647 1.02487 1.00600 0.91336 1.20842 0.96246 1.00777 0.90069 0.90550 0.93309 0.93804 0.89057 0.89586 0.82097 0.79960 0.80514 0.83247 0.70044 0.72967 0.84108 0.76020 0.90035 0.89437 0.92056 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 9.89 71.98 0.71 1.27 16 2 C -0.05 0.22 6.03 29.85 0.18 0.40 16 3 C -0.22 -0.49 5.37 -19.81 -0.11 -0.60 16 4 C 0.14 0.28 6.71 40.63 0.27 0.56 16 5 C 0.00 0.00 5.71 -19.88 -0.11 -0.12 16 6 C -0.14 0.46 8.64 22.61 0.20 0.66 16 7 C 0.10 -0.19 11.17 84.60 0.94 0.75 16 8 N -0.51 -1.12 10.35 -196.18 -2.03 -3.15 16 9 C 0.10 -0.09 11.17 84.60 0.94 0.85 16 10 C -0.16 0.34 9.89 22.61 0.22 0.57 16 11 N -0.46 -2.18 7.42 -48.64 -0.36 -2.54 16 12 N -0.30 -3.72 10.88 -54.69 -0.60 -4.31 16 13 C 0.29 2.28 7.75 133.23 1.03 3.31 16 14 N -0.62 -2.99 5.44 -311.46 -1.69 -4.69 16 15 C 0.59 5.67 7.75 86.41 0.67 6.34 16 16 O -0.52 -9.64 15.54 -4.42 -0.07 -9.71 16 17 C -0.29 -1.25 6.45 24.08 0.16 -1.10 16 18 S 0.23 -0.55 19.78 -56.49 -1.12 -1.67 16 19 C -0.23 0.49 5.54 24.69 0.14 0.63 16 20 C -0.04 0.21 2.76 71.24 0.20 0.40 16 21 O -0.54 2.58 9.85 -148.98 -1.47 1.11 16 22 Si 0.93 -4.95 26.59 68.60 1.82 -3.13 16 23 H -0.23 1.40 7.10 99.48 0.71 2.10 16 24 H -0.24 0.63 7.11 99.48 0.71 1.34 16 25 H -0.25 0.94 7.11 99.48 0.71 1.65 16 26 C -0.10 -0.03 5.75 -21.05 -0.12 -0.15 16 27 C -0.09 0.20 8.67 71.24 0.62 0.82 16 28 C -0.05 -0.19 9.80 21.72 0.21 0.03 16 29 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.09 -0.61 5.33 -2.39 -0.01 -0.62 16 33 H 0.09 -0.63 7.67 -2.39 -0.02 -0.65 16 34 H 0.16 -1.18 6.66 -2.91 -0.02 -1.20 16 35 H 0.18 -1.31 8.06 -2.91 -0.02 -1.33 16 36 H 0.18 -0.96 8.06 -2.91 -0.02 -0.99 16 37 H 0.15 -0.81 8.06 -2.91 -0.02 -0.84 16 38 H 0.45 -0.11 8.96 -213.34 -1.91 -2.03 16 39 H 0.43 -0.96 7.28 -92.71 -0.68 -1.63 16 40 H 0.14 -1.07 7.96 -2.38 -0.02 -1.09 16 41 H 0.39 -3.93 8.66 -74.06 -0.64 -4.57 16 42 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.09 -0.17 6.42 -2.39 -0.02 -0.19 16 44 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 45 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 Total: 0.00 -23.24 388.13 -0.74 -23.98 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: -1.38 Total: -10.50 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.15 Total: 14.61 kcal Atomic # 7 Polarization: -10.01 SS G_CDS: -4.68 Total: -14.69 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -1.54 Total: -8.60 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: 1.82 Total: -3.13 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -1.12 Total: -1.67 kcal Total: -23.24 -0.74 -23.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632476045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.649 kcal (2) G-P(sol) polarization free energy of solvation -23.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds