Wall clock time and date at job start Thu Mar 4 2021 15:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00118 * 2 1 4 4 Si 1.86306 * 109.46984 * 270.00047 * 3 2 1 5 5 C 1.86292 * 109.47050 * 59.99890 * 4 3 2 6 6 C 1.86299 * 109.46809 * 179.97438 * 4 3 2 7 7 C 1.86291 * 109.46977 * 299.99968 * 4 3 2 8 8 C 1.34773 * 119.99868 * 179.97438 * 2 1 3 9 9 O 1.21565 * 119.99972 * 183.65443 * 8 2 1 10 10 C 1.47719 * 120.00119 * 3.66369 * 8 2 1 11 11 N 1.31800 * 126.51369 * 352.83394 * 10 8 2 12 12 N 1.28476 * 110.06884 * 179.97438 * 11 10 8 13 13 C 1.46504 * 124.88403 * 180.02562 * 12 11 10 14 14 C 1.35026 * 110.23448 * 0.02562 * 12 11 10 15 15 C 1.50698 * 126.38936 * 179.97438 * 14 12 11 16 16 O 1.42902 * 109.46903 * 30.00177 * 15 14 12 17 17 Si 1.86301 * 109.47016 * 149.99898 * 15 14 12 18 18 H 1.48497 * 109.47339 * 60.00470 * 17 15 14 19 19 H 1.48505 * 109.46976 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47557 * 299.99975 * 17 15 14 21 21 C 1.35372 * 107.22698 * 0.24039 * 14 12 11 22 22 H 1.09008 * 109.47172 * 263.98670 * 1 2 3 23 23 H 1.09000 * 109.47254 * 23.98029 * 1 2 3 24 24 H 1.09000 * 109.47237 * 143.98795 * 1 2 3 25 25 H 1.09006 * 109.47140 * 30.00026 * 3 2 1 26 26 H 1.08997 * 109.47452 * 149.99900 * 3 2 1 27 27 H 1.09003 * 109.47579 * 60.00027 * 5 4 3 28 28 H 1.08997 * 109.47290 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47480 * 300.00158 * 5 4 3 30 30 H 1.09005 * 109.46932 * 60.00465 * 6 4 3 31 31 H 1.09003 * 109.46882 * 179.97438 * 6 4 3 32 32 H 1.08995 * 109.47465 * 299.99539 * 6 4 3 33 33 H 1.09007 * 109.47593 * 59.99934 * 7 4 3 34 34 H 1.08997 * 109.47453 * 179.97438 * 7 4 3 35 35 H 1.09005 * 109.47522 * 299.99999 * 7 4 3 36 36 H 1.09002 * 109.47075 * 269.96267 * 13 12 11 37 37 H 1.09002 * 109.47132 * 29.95346 * 13 12 11 38 38 H 1.08992 * 109.47552 * 149.96017 * 13 12 11 39 39 H 1.08999 * 109.47055 * 269.99964 * 15 14 12 40 40 H 0.96697 * 113.99640 * 59.99953 * 16 15 14 41 41 H 1.07998 * 127.24942 * 179.75256 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 14 2.5080 1.8065 -1.7565 5 6 0.8802 2.0292 -2.6347 6 6 3.4389 3.4202 -1.7565 7 6 3.5148 0.5081 -2.6347 8 6 2.1388 -1.1672 0.0005 9 8 3.3526 -1.1682 0.0676 10 6 1.4025 -2.4452 -0.0807 11 7 0.0950 -2.6018 -0.0257 12 7 -0.2045 -3.8470 -0.1276 13 6 -1.5668 -4.3855 -0.1064 14 6 0.9168 -4.5880 -0.2571 15 6 0.9865 -6.0864 -0.4019 16 8 -0.1910 -6.5564 -1.0612 17 14 2.4862 -6.5439 -1.4082 18 1 3.7098 -6.0555 -0.7231 19 1 2.5552 -8.0205 -1.5504 20 1 2.3893 -5.9206 -2.7525 21 6 1.9671 -3.7345 -0.2265 22 1 -0.3634 -0.1077 1.0221 23 1 -0.3634 0.9389 -0.4177 24 1 -0.3634 -0.8313 -0.6042 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 0.2911 2.7889 -2.1209 28 1 1.0618 2.3443 -3.6622 29 1 0.3351 1.0853 -2.6347 30 1 4.3913 3.2902 -1.2425 31 1 3.6209 3.7347 -2.7842 32 1 2.8494 4.1797 -1.2429 33 1 2.9698 -0.4360 -2.6347 34 1 3.6961 0.8224 -3.6625 35 1 4.4672 0.3777 -2.1209 36 1 -1.8504 -4.6163 0.9205 37 1 -2.2559 -3.6470 -0.5162 38 1 -1.6079 -5.2938 -0.7076 39 1 1.0577 -6.5439 0.5849 40 1 -0.3188 -6.1897 -1.9468 41 1 3.0151 -3.9847 -0.3003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_11678528_13259642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:21:03 Heat of formation + Delta-G solvation = -8.962871 kcal Electronic energy + Delta-G solvation = -21533.803229 eV Core-core repulsion = 18382.153495 eV Total energy + Delta-G solvation = -3151.649734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.87076 -40.57727 -38.11114 -36.58603 -34.37679 -32.68504 -29.71490 -29.14484 -28.62849 -28.37088 -28.04035 -27.05207 -26.30943 -23.46988 -22.02514 -20.33346 -18.73550 -17.74528 -17.62976 -17.12565 -16.88699 -16.56394 -15.89854 -15.82647 -15.23695 -14.74962 -14.40000 -14.34385 -14.17566 -14.07192 -13.84673 -13.77646 -13.59303 -13.54352 -13.41712 -13.22007 -13.09533 -13.01632 -12.90863 -12.47360 -12.29550 -12.06634 -11.75588 -11.55781 -11.22125 -10.84870 -10.79546 -10.76652 -10.18632 -9.95168 -9.19739 0.44356 0.75026 1.12620 1.46767 1.47917 1.59653 1.67924 1.85614 1.94809 1.95540 2.20603 2.33778 2.65901 3.11947 3.29510 3.35381 3.89744 4.32638 4.33889 4.38813 4.43292 4.47374 4.55235 4.58802 4.67461 4.70862 4.74880 4.81730 4.81906 4.82720 4.85228 4.85502 4.98019 5.00325 5.21085 5.48587 5.52990 5.59854 5.63470 5.74034 6.25446 6.45450 6.77493 7.11450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.581 5.581 3 C -0.198 4.198 4 Si 1.056 2.944 5 C -0.447 4.447 6 C -0.452 4.452 7 C -0.462 4.462 8 C 0.583 3.417 9 O -0.568 6.568 10 C -0.037 4.037 11 N -0.254 5.254 12 N -0.262 5.262 13 C 0.062 3.938 14 C -0.008 4.008 15 C -0.041 4.041 16 O -0.538 6.538 17 Si 0.997 3.003 18 H -0.265 1.265 19 H -0.253 1.253 20 H -0.262 1.262 21 C -0.207 4.207 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.394 0.606 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 -0.868 -1.748 6.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.312 5.312 3 C -0.365 4.365 4 Si 1.248 2.752 5 C -0.555 4.555 6 C -0.561 4.561 7 C -0.566 4.566 8 C 0.370 3.630 9 O -0.446 6.446 10 C -0.195 4.195 11 N -0.092 5.092 12 N -0.051 5.051 13 C -0.076 4.076 14 C -0.134 4.134 15 C -0.152 4.152 16 O -0.345 6.345 17 Si 0.819 3.181 18 H -0.189 1.189 19 H -0.177 1.177 20 H -0.186 1.186 21 C -0.235 4.235 22 H 0.074 0.926 23 H 0.116 0.884 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.244 0.756 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.454 -0.892 -1.497 6.685 hybrid contribution 0.749 -0.030 0.046 0.751 sum -5.705 -0.922 -1.451 5.959 Atomic orbital electron populations 1.22352 0.77104 1.05066 1.03059 1.47398 1.08282 1.04725 1.70820 1.26955 1.00550 0.87532 1.21418 0.78768 0.67022 0.65387 0.64035 1.26109 1.16177 1.04923 1.08307 1.26113 1.08566 1.16412 1.04965 1.26397 1.09362 1.12627 1.08241 1.17183 0.85974 0.82625 0.77230 1.90746 1.14256 1.87072 1.52567 1.21799 0.90455 0.95098 1.12121 1.73689 1.15254 1.00909 1.19391 1.45915 1.08943 1.02610 1.47624 1.22965 0.75694 1.02518 1.06408 1.22152 0.86492 0.96942 1.07794 1.24685 0.99195 0.85893 1.05469 1.86464 1.42348 1.70721 1.34966 0.85007 0.74851 0.79965 0.78286 1.18939 1.17668 1.18618 1.21658 1.00507 0.90988 1.10374 0.92583 0.88440 0.88831 0.87343 0.90581 0.89732 0.90869 0.91490 0.91537 0.90712 0.89949 0.93562 0.91135 0.92666 0.88995 0.87607 0.84572 0.83797 0.75595 0.82303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.00 9.32 127.77 1.19 1.19 16 2 N -0.58 -3.12 2.37 -652.63 -1.55 -4.67 16 3 C -0.20 -0.38 4.64 127.77 0.59 0.21 16 4 Si 1.06 -1.49 12.44 68.60 0.85 -0.63 16 5 C -0.45 1.41 8.10 113.37 0.92 2.33 16 6 C -0.45 0.83 8.65 113.37 0.98 1.81 16 7 C -0.46 -2.65 8.47 113.37 0.96 -1.69 16 8 C 0.58 6.90 7.22 86.75 0.63 7.53 16 9 O -0.57 -10.23 16.29 -3.92 -0.06 -10.30 16 10 C -0.04 -0.35 6.82 42.46 0.29 -0.06 16 11 N -0.25 -1.25 8.51 -48.17 -0.41 -1.67 16 12 N -0.26 -0.12 3.70 -355.92 -1.32 -1.44 16 13 C 0.06 -0.48 11.00 127.77 1.41 0.93 16 14 C -0.01 -0.01 6.17 41.40 0.26 0.25 16 15 C -0.04 0.19 2.99 71.24 0.21 0.40 16 16 O -0.54 4.01 10.02 -148.98 -1.49 2.52 16 17 Si 1.00 -2.30 26.64 68.60 1.83 -0.48 16 18 H -0.26 -0.34 6.87 99.48 0.68 0.34 16 19 H -0.25 0.30 7.11 99.48 0.71 1.01 16 20 H -0.26 0.03 7.11 99.48 0.71 0.74 16 21 C -0.21 -1.48 9.36 22.41 0.21 -1.27 16 22 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 23 H 0.10 -0.51 7.23 -2.39 -0.02 -0.53 16 24 H 0.09 0.09 5.37 -2.39 -0.01 0.07 16 25 H 0.11 -0.36 7.89 -2.38 -0.02 -0.38 16 26 H 0.08 0.46 7.19 -2.39 -0.02 0.44 16 27 H 0.08 -0.48 7.96 -2.39 -0.02 -0.50 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 29 H 0.07 -0.14 7.63 -2.39 -0.02 -0.16 16 30 H 0.07 -0.03 7.96 -2.38 -0.02 -0.05 16 31 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 33 H 0.05 0.42 7.78 -2.38 -0.02 0.40 16 34 H 0.07 0.26 7.96 -2.39 -0.02 0.24 16 35 H 0.05 0.50 7.96 -2.38 -0.02 0.48 16 36 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.14 -1.52 5.00 -2.39 -0.01 -1.53 16 39 H 0.14 -1.03 7.96 -2.39 -0.02 -1.05 16 40 H 0.39 -5.22 8.39 -74.06 -0.62 -5.84 16 41 H 0.16 1.15 6.87 -2.91 -0.02 1.13 16 Total: 0.00 -19.45 335.30 6.62 -12.82 By element: Atomic # 1 Polarization: -8.92 SS G_CDS: 1.13 Total: -7.79 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 7.64 Total: 11.63 kcal Atomic # 7 Polarization: -4.49 SS G_CDS: -3.28 Total: -7.77 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -1.56 Total: -7.78 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.68 Total: -1.11 kcal Total: -19.45 6.62 -12.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_11678528_13259642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.862 kcal (2) G-P(sol) polarization free energy of solvation -19.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds