Wall clock time and date at job start Thu Mar 4 2021 13:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21281 * 120.00387 * 2 1 4 4 C 1.50708 * 119.99965 * 180.02562 * 2 1 3 5 5 H 1.09001 * 112.84408 * 48.79820 * 4 2 1 6 6 C 1.53782 * 113.61525 * 179.97438 * 4 2 1 7 7 C 1.53785 * 87.07676 * 139.97988 * 6 4 2 8 8 H 1.08997 * 113.61337 * 89.20384 * 7 6 4 9 9 N 1.46505 * 113.61139 * 220.01722 * 7 6 4 10 10 C 1.34773 * 120.00095 * 205.00489 * 9 7 6 11 11 O 1.21703 * 119.99823 * 359.97438 * 10 9 7 12 12 C 1.46427 * 120.00180 * 179.72433 * 10 9 7 13 13 C 1.34805 * 119.99881 * 180.26984 * 12 10 9 14 14 C 1.47207 * 119.99852 * 179.97438 * 13 12 10 15 15 C 1.39838 * 120.16801 * 359.72912 * 14 13 12 16 16 C 1.37899 * 119.82222 * 179.72095 * 15 14 13 17 17 C 1.38398 * 120.16872 * 0.57568 * 16 15 14 18 18 C 1.50700 * 119.82372 * 179.72195 * 17 16 15 19 19 O 1.42901 * 109.47425 * 119.97835 * 18 17 16 20 20 Si 1.86299 * 109.47227 * 359.97438 * 18 17 16 21 21 C 1.38401 * 120.35091 * 359.69751 * 17 16 15 22 22 C 1.37889 * 120.16732 * 0.02562 * 21 17 16 23 23 C 1.53774 * 87.08290 * 334.56560 * 7 6 4 24 24 H 0.97000 * 120.00021 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99944 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.61386 * 25.43092 * 6 4 2 27 27 H 1.08996 * 113.68805 * 254.54004 * 6 4 2 28 28 H 0.97000 * 119.99792 * 25.00054 * 9 7 6 29 29 H 1.08002 * 119.99632 * 0.27736 * 12 10 9 30 30 H 1.08002 * 120.00487 * 0.02562 * 13 12 10 31 31 H 1.07992 * 120.08800 * 359.97438 * 15 14 13 32 32 H 1.07996 * 119.91186 * 180.30075 * 16 15 14 33 33 H 1.09002 * 109.47260 * 239.97946 * 18 17 16 34 34 H 0.96700 * 113.99755 * 300.00096 * 19 18 17 35 35 H 1.48499 * 109.99731 * 58.68467 * 20 18 17 36 36 H 1.48507 * 110.00023 * 180.02562 * 20 18 17 37 37 H 1.07991 * 119.91608 * 180.02562 * 21 17 16 38 38 H 1.07999 * 120.09022 * 179.97438 * 22 21 17 39 39 H 1.09003 * 113.61169 * 139.98192 * 23 7 6 40 40 H 1.09001 * 113.61598 * 270.88462 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3052 -0.0006 5 1 1.7398 -2.0022 -0.7567 6 6 3.6295 -1.1342 -0.0011 7 6 3.6828 -2.3120 0.9862 8 1 3.7552 -3.2854 0.5012 9 7 4.6665 -2.1357 2.0575 10 6 5.1916 -3.2129 2.6742 11 8 4.8482 -4.3320 2.3415 12 6 6.1793 -3.0368 3.7408 13 6 6.7085 -4.1144 4.3539 14 6 7.7019 -3.9375 5.4257 15 6 8.1032 -2.6533 5.8069 16 6 9.0299 -2.4956 6.8158 17 6 9.5713 -3.6044 7.4425 18 6 10.5882 -3.4232 8.5398 19 8 10.0947 -4.0063 9.7476 20 14 10.8952 -1.6054 8.8080 21 6 9.1835 -4.8788 7.0670 22 6 8.2536 -5.0528 6.0638 23 6 2.2506 -1.9309 1.3962 24 1 -0.4850 -0.8400 -0.0004 25 1 -0.4850 0.8401 0.0004 26 1 3.9633 -0.1893 0.4278 27 1 4.0939 -1.3497 -0.9634 28 1 4.9399 -1.2436 2.3229 29 1 6.4836 -2.0436 4.0363 30 1 6.4044 -5.1077 4.0581 31 1 7.6854 -1.7872 5.3152 32 1 9.3373 -1.5043 7.1147 33 1 11.5205 -3.9110 8.2554 34 1 9.2653 -3.6200 10.0605 35 1 9.6255 -0.9232 9.1654 36 1 11.8968 -1.4133 9.8875 37 1 9.6101 -5.7391 7.5610 38 1 7.9521 -6.0478 5.7715 39 1 1.6005 -2.7900 1.5615 40 1 2.2074 -1.2038 2.2072 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_11684966_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:04:56 Heat of formation + Delta-G solvation = -43.445061 kcal Electronic energy + Delta-G solvation = -22847.950470 eV Core-core repulsion = 19208.851355 eV Total energy + Delta-G solvation = -3639.099115 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59674 -40.73895 -40.30185 -38.51648 -37.88582 -35.07895 -34.74222 -34.31260 -32.20280 -31.25504 -27.86761 -26.75311 -26.64445 -24.26787 -23.86287 -22.34006 -21.72842 -20.88505 -20.10540 -18.89984 -18.56797 -18.12340 -17.86189 -17.15124 -16.70621 -16.56919 -16.32088 -16.19588 -16.00664 -15.74059 -15.28266 -15.14944 -15.02175 -14.50278 -14.37127 -14.12360 -13.83552 -13.53747 -13.40120 -13.27645 -13.04389 -12.42392 -12.26370 -12.23488 -12.09779 -11.69775 -11.62039 -11.35151 -11.08565 -10.90752 -10.66797 -10.62403 -10.09796 -9.97680 -9.24276 -4.92249 -0.54936 0.39884 0.88555 1.30698 1.57601 1.59875 1.96233 2.15470 2.22751 2.68982 2.81229 3.38403 3.39160 3.44610 3.56531 3.69121 3.74455 3.81303 3.87982 3.95262 4.16050 4.21768 4.27459 4.36517 4.46426 4.55664 4.58382 4.67019 4.72770 4.85254 4.88932 4.97762 4.98160 5.09365 5.15551 5.17333 5.38299 5.47646 5.55003 5.60755 5.87615 5.90485 6.45365 6.46316 6.53662 7.20025 7.32948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.524 3.476 3 O -0.593 6.593 4 C -0.130 4.130 5 H 0.144 0.856 6 C -0.122 4.122 7 C 0.120 3.880 8 H 0.111 0.889 9 N -0.704 5.704 10 C 0.544 3.456 11 O -0.589 6.589 12 C -0.211 4.211 13 C -0.019 4.019 14 C -0.081 4.081 15 C -0.096 4.096 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.087 4.087 19 O -0.549 6.549 20 Si 0.769 3.231 21 C -0.107 4.107 22 C -0.102 4.102 23 C -0.127 4.127 24 H 0.418 0.582 25 H 0.405 0.595 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.416 0.584 29 H 0.161 0.839 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.386 0.614 35 H -0.280 1.280 36 H -0.307 1.307 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 1.669 -1.499 2.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.310 3.690 3 O -0.474 6.474 4 C -0.152 4.152 5 H 0.162 0.838 6 C -0.160 4.160 7 C 0.015 3.985 8 H 0.129 0.871 9 N -0.354 5.354 10 C 0.335 3.665 11 O -0.472 6.472 12 C -0.231 4.231 13 C -0.039 4.039 14 C -0.081 4.081 15 C -0.113 4.113 16 C -0.139 4.139 17 C -0.110 4.110 18 C -0.195 4.195 19 O -0.357 6.357 20 Si 0.674 3.326 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.166 4.166 24 H 0.249 0.751 25 H 0.236 0.764 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.253 0.747 29 H 0.179 0.821 30 H 0.142 0.858 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.143 0.857 34 H 0.235 0.765 35 H -0.206 1.206 36 H -0.235 1.235 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.110 0.890 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.185 1.757 -1.266 2.469 hybrid contribution -1.271 -0.305 0.858 1.563 sum -2.456 1.452 -0.409 2.882 Atomic orbital electron populations 1.43822 1.06533 1.13765 1.76035 1.20764 0.83343 0.91005 0.73925 1.90739 1.69388 1.35279 1.51983 1.22604 0.96419 0.94954 1.01200 0.83837 1.23221 0.93905 0.98434 1.00474 1.22483 0.87649 1.00029 0.88360 0.87132 1.45808 1.43345 1.09441 1.36832 1.18743 0.81207 0.84202 0.82371 1.90808 1.63599 1.25905 1.66857 1.23026 1.00064 1.01416 0.98608 1.22369 0.91048 0.99570 0.90945 1.19130 0.97824 0.94155 0.97004 1.21656 0.96345 0.96968 0.96376 1.21176 0.97294 0.98543 0.96924 1.20542 0.98453 0.94010 0.98004 1.25304 0.98359 1.12477 0.83404 1.86578 1.45004 1.63355 1.40777 0.94065 0.78684 0.73066 0.86752 1.21074 0.97367 0.97324 0.96731 1.21619 0.95927 0.99058 0.95427 1.23350 0.97163 1.01092 0.95010 0.75084 0.76420 0.88994 0.89391 0.74660 0.82136 0.85795 0.82655 0.83399 0.85734 0.76454 1.20622 1.23524 0.85252 0.84490 0.89022 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.18 8.87 -173.53 -1.54 3.64 16 2 C 0.52 0.27 7.63 87.66 0.67 0.94 16 3 O -0.59 -6.18 16.74 -3.03 -0.05 -6.23 16 4 C -0.13 0.61 4.15 -11.01 -0.05 0.56 16 5 H 0.14 -1.35 8.14 -2.39 -0.02 -1.37 16 6 C -0.12 0.33 7.16 31.12 0.22 0.56 16 7 C 0.12 -0.24 4.24 45.52 0.19 -0.05 16 8 H 0.11 0.08 7.46 -2.39 -0.02 0.06 16 9 N -0.70 1.33 5.35 -444.25 -2.38 -1.05 16 10 C 0.54 1.84 7.74 86.38 0.67 2.51 16 11 O -0.59 -7.03 15.83 -4.36 -0.07 -7.10 16 12 C -0.21 0.32 9.41 23.62 0.22 0.54 16 13 C -0.02 -0.01 9.46 23.84 0.23 0.22 16 14 C -0.08 0.04 5.87 -20.15 -0.12 -0.08 16 15 C -0.10 0.34 9.41 22.58 0.21 0.55 16 16 C -0.12 0.43 8.65 22.23 0.19 0.62 16 17 C -0.11 0.14 5.40 -19.79 -0.11 0.03 16 18 C -0.09 0.14 2.82 71.24 0.20 0.34 16 19 O -0.55 -1.07 12.76 -148.98 -1.90 -2.97 16 20 Si 0.77 -2.44 29.77 68.60 2.04 -0.40 16 21 C -0.11 -0.03 9.59 22.23 0.21 0.19 16 22 C -0.10 -0.01 9.80 22.58 0.22 0.21 16 23 C -0.13 0.55 7.43 31.12 0.23 0.78 16 24 H 0.42 -5.14 8.83 -92.71 -0.82 -5.96 16 25 H 0.40 -2.62 8.93 -92.71 -0.83 -3.45 16 26 H 0.09 -0.02 7.41 -2.39 -0.02 -0.04 16 27 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.42 -2.87 8.71 -92.71 -0.81 -3.67 16 29 H 0.16 -1.35 6.07 -2.91 -0.02 -1.36 16 30 H 0.12 0.37 7.52 -2.91 -0.02 0.35 16 31 H 0.16 -1.40 6.17 -2.91 -0.02 -1.42 16 32 H 0.15 -1.14 4.85 -2.91 -0.01 -1.15 16 33 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.39 -1.39 8.70 -74.06 -0.64 -2.03 16 35 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 36 H -0.31 -1.61 7.11 99.48 0.71 -0.91 16 37 H 0.13 -0.03 8.06 -2.92 -0.02 -0.06 16 38 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.09 -0.27 8.09 -2.39 -0.02 -0.29 16 Total: 0.00 -25.75 343.53 -2.63 -28.38 By element: Atomic # 1 Polarization: -20.25 SS G_CDS: -1.93 Total: -22.18 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 3.20 Total: 7.92 kcal Atomic # 7 Polarization: 6.51 SS G_CDS: -3.92 Total: 2.59 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -2.02 Total: -16.31 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.04 Total: -0.40 kcal Total: -25.75 -2.63 -28.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_11684966_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.069 kcal (2) G-P(sol) polarization free energy of solvation -25.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds