Wall clock time and date at job start Thu Mar 4 2021 13:08:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35970 * 116.99777 * 2 1
4 4 C 1.39445 * 120.11697 * 180.02562 * 3 2 1
5 5 O 1.34778 * 133.24692 * 0.32371 * 4 3 2
6 6 C 1.34926 * 110.84465 * 180.18195 * 5 4 3
7 7 C 1.46989 * 125.13699 * 179.81179 * 6 5 4
8 8 O 1.21657 * 119.99922 * 179.69790 * 7 6 5
9 9 N 1.34778 * 120.00525 * 359.69767 * 7 6 5
10 10 C 1.46494 * 120.00581 * 179.97438 * 9 7 6
11 11 H 1.09002 * 112.84708 * 23.80321 * 10 9 7
12 12 C 1.53784 * 113.61828 * 154.99554 * 10 9 7
13 13 C 1.53788 * 87.07878 * 139.98330 * 12 10 9
14 14 H 1.08996 * 113.61401 * 89.20483 * 13 12 10
15 15 C 1.50696 * 113.61137 * 220.02139 * 13 12 10
16 16 N 1.34777 * 120.00076 * 178.47520 * 15 13 12
17 17 O 1.21281 * 120.00074 * 358.47022 * 15 13 12
18 18 C 1.53784 * 87.17203 * 334.61261 * 13 12 10
19 19 C 1.35805 * 109.71775 * 359.54827 * 6 5 4
20 20 C 1.40618 * 119.13548 * 180.02562 * 4 3 2
21 21 C 1.39768 * 120.11854 * 359.95311 * 20 4 3
22 22 C 1.50700 * 120.09583 * 179.97438 * 21 20 4
23 23 O 1.42904 * 109.47108 * 75.00025 * 22 21 20
24 24 Si 1.86297 * 109.47428 * 195.00124 * 22 21 20
25 25 C 1.36634 * 119.81404 * 359.97438 * 21 20 4
26 26 C 1.38253 * 120.12341 * 359.97438 * 3 2 1
27 27 H 1.08994 * 109.47198 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.47127 * 300.00258 * 1 2 3
29 29 H 1.09004 * 109.46950 * 59.99775 * 1 2 3
30 30 H 0.96998 * 119.99665 * 359.97438 * 9 7 6
31 31 H 1.08999 * 113.60927 * 25.43958 * 12 10 9
32 32 H 1.08997 * 113.61210 * 254.53044 * 12 10 9
33 33 H 0.97001 * 120.00485 * 180.02562 * 16 15 13
34 34 H 0.97005 * 119.99790 * 359.72082 * 16 15 13
35 35 H 1.09000 * 113.60967 * 139.94266 * 18 13 12
36 36 H 1.08996 * 113.61145 * 270.84237 * 18 13 12
37 37 H 1.08010 * 126.95118 * 180.26397 * 19 6 5
38 38 H 1.09000 * 109.46935 * 315.00261 * 22 21 20
39 39 H 0.96697 * 114.00099 * 60.00074 * 23 22 21
40 40 H 1.48499 * 110.00070 * 58.68233 * 24 22 21
41 41 H 1.48500 * 110.00028 * 179.97438 * 24 22 21
42 42 H 1.08001 * 119.75103 * 179.97438 * 25 21 20
43 43 H 1.08004 * 119.66425 * 0.02562 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2115 0.0000
4 6 3.4386 1.2874 -0.0005
5 8 4.4141 0.3574 -0.0067
6 6 5.6317 0.9387 -0.0001
7 6 6.9130 0.2184 -0.0001
8 8 7.9595 0.8387 0.0006
9 7 6.9286 -1.1293 -0.0009
10 6 8.2056 -1.8472 -0.0015
11 1 9.0249 -1.2537 0.4042
12 6 8.1170 -3.2626 0.5933
13 6 9.0655 -3.7095 -0.5317
14 1 10.1208 -3.6270 -0.2715
15 6 8.7116 -5.0498 -1.1228
16 7 9.4403 -5.5516 -2.1395
17 8 7.7710 -5.6769 -0.6836
18 6 8.5371 -2.5176 -1.3471
19 6 5.4944 2.2898 0.0006
20 6 4.0554 2.5511 0.0000
21 6 3.2766 3.7117 0.0001
22 6 3.9381 5.0657 0.0013
23 8 4.4614 5.3413 -1.2996
24 14 2.6861 6.3682 0.4558
25 6 1.9136 3.6151 -0.0009
26 6 1.2957 2.3726 -0.0005
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 6.0942 -1.6239 -0.0011
31 1 7.1221 -3.7028 0.5262
32 1 8.5515 -3.3455 1.5895
33 1 9.2123 -6.4141 -2.5202
34 1 10.1902 -5.0481 -2.4934
35 1 9.3102 -2.0002 -1.9151
36 1 7.6573 -2.7538 -1.9456
37 1 6.2875 3.0230 0.0012
38 1 4.7500 5.0727 0.7285
39 1 3.7932 5.3509 -1.9984
40 1 2.1111 6.0754 1.7932
41 1 3.3263 7.7081 0.4611
42 1 1.3128 4.5126 -0.0004
43 1 0.2174 2.3120 -0.0005
There are 63 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 63
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
m_22_11684966_6672420.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Thu Mar 4 2021 13:08:21
Heat of formation + Delta-G solvation = -76.779378 kcal
Electronic energy + Delta-G solvation = -29847.908154 eV
Core-core repulsion = 25441.773031 eV
Total energy + Delta-G solvation = -4406.135124 eV
No. of doubly occupied orbitals = 63
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 347.129 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-43.65745 -41.62562 -40.77627 -40.17622 -39.08125 -38.46590 -37.00341 -34.79288
-34.44761 -33.55425 -31.90813 -30.98352 -28.79257 -27.49939 -26.87571 -26.30156
-24.89715 -23.93887 -22.36516 -21.82520 -21.65482 -20.71713 -19.63323 -18.97801
-18.67936 -18.52206 -17.93860 -17.73819 -17.63248 -16.96789 -16.79782 -16.64037
-16.49757 -16.21192 -15.85111 -15.77046 -15.61410 -15.16328 -14.82553 -14.61660
-14.43793 -14.31355 -14.05661 -13.65990 -13.58844 -13.51383 -13.42920 -13.33469
-12.59046 -12.54000 -12.37369 -12.29715 -12.08385 -11.90000 -11.83028 -11.38322
-10.93380 -10.89311 -10.70718 -10.46042 -10.23732 -9.76426 -8.98357 -5.08373
-0.58597 0.12154 0.71112 1.22546 1.31010 1.58384 1.61736 1.93239
1.95944 2.04488 2.06106 2.41076 2.54586 3.21552 3.25555 3.32795
3.43043 3.53087 3.59084 3.63004 3.72713 3.83656 3.87093 3.99402
4.07971 4.10145 4.11360 4.18568 4.38605 4.44610 4.46660 4.47222
4.53346 4.60302 4.72575 4.83032 4.85374 4.88478 4.98320 5.06896
5.22886 5.28848 5.37895 5.64493 5.75693 6.16260 6.29543 6.34064
6.56168 6.92552 7.24550
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.310 6.310
3 C 0.150 3.850
4 C 0.046 3.954
5 O -0.173 6.173
6 C -0.025 4.025
7 C 0.604 3.396
8 O -0.510 6.510
9 N -0.706 5.706
10 C 0.122 3.878
11 H 0.126 0.874
12 C -0.123 4.123
13 C -0.138 4.138
14 H 0.122 0.878
15 C 0.528 3.472
16 N -0.854 5.854
17 O -0.541 6.541
18 C -0.136 4.136
19 C -0.104 4.104
20 C -0.082 4.082
21 C -0.099 4.099
22 C -0.066 4.066
23 O -0.536 6.536
24 Si 0.686 3.314
25 C -0.088 4.088
26 C -0.178 4.178
27 H 0.105 0.895
28 H 0.060 0.940
29 H 0.061 0.939
30 H 0.411 0.589
31 H 0.103 0.897
32 H 0.086 0.914
33 H 0.402 0.598
34 H 0.403 0.597
35 H 0.086 0.914
36 H 0.092 0.908
37 H 0.174 0.826
38 H 0.114 0.886
39 H 0.379 0.621
40 H -0.255 1.255
41 H -0.252 1.252
42 H 0.141 0.859
43 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.212 0.226 -2.913 4.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.224 6.224
3 C 0.104 3.896
4 C -0.002 4.002
5 O -0.075 6.075
6 C -0.075 4.075
7 C 0.390 3.610
8 O -0.386 6.386
9 N -0.356 5.356
10 C 0.017 3.983
11 H 0.143 0.857
12 C -0.162 4.162
13 C -0.160 4.160
14 H 0.140 0.860
15 C 0.313 3.687
16 N -0.417 5.417
17 O -0.417 6.417
18 C -0.175 4.175
19 C -0.124 4.124
20 C -0.084 4.084
21 C -0.100 4.100
22 C -0.176 4.176
23 O -0.341 6.341
24 Si 0.587 3.413
25 C -0.105 4.105
26 C -0.197 4.197
27 H 0.124 0.876
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.247 0.753
31 H 0.121 0.879
32 H 0.104 0.896
33 H 0.233 0.767
34 H 0.231 0.769
35 H 0.105 0.895
36 H 0.110 0.890
37 H 0.192 0.808
38 H 0.131 0.869
39 H 0.226 0.774
40 H -0.180 1.180
41 H -0.177 1.177
42 H 0.158 0.842
43 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -2.716 0.564 -1.581 3.193
hybrid contribution 0.131 -0.724 -0.220 0.768
sum -2.585 -0.160 -1.801 3.155
Atomic orbital electron populations
1.23196 0.77283 1.04800 1.01790 1.86184 1.22189 1.25640 1.88341
1.17742 0.86501 0.85917 0.99393 1.18791 0.87483 0.86957 1.06985
1.84058 1.12652 1.34712 1.76067 1.21964 0.83934 0.92588 1.08997
1.16655 0.85427 0.82226 0.76716 1.90915 1.30316 1.67482 1.49904
1.45882 1.10205 1.05623 1.73913 1.22646 0.86881 0.91954 0.96795
0.85668 1.23274 1.01220 0.93424 0.98247 1.22563 1.02234 0.92103
0.99102 0.86026 1.20359 0.81874 0.87102 0.79380 1.43893 1.35264
1.24918 1.37621 1.90770 1.28974 1.60967 1.60982 1.23466 1.02221
0.94466 0.97305 1.22749 0.94779 0.94321 1.00593 1.19407 0.92637
0.92074 1.04252 1.19485 0.92917 0.94448 1.03122 1.25064 1.05467
0.97773 0.89341 1.86541 1.38159 1.93343 1.16041 0.94994 0.83016
0.77796 0.85476 1.20391 0.93086 0.97257 0.99787 1.20978 1.00437
0.90511 1.07774 0.87629 0.92104 0.92023 0.75329 0.87859 0.89562
0.76684 0.76871 0.89503 0.88963 0.80838 0.86872 0.77420 1.17952
1.17698 0.84194 0.83358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.06 9.81 101.05 0.99 0.93 16
2 O -0.31 -0.50 10.50 -19.65 -0.21 -0.71 16
3 C 0.15 0.26 6.70 -39.13 -0.26 0.00 16
4 C 0.05 0.15 7.35 -38.23 -0.28 -0.13 16
5 O -0.17 -0.63 10.28 2.66 0.03 -0.60 16
6 C -0.02 -0.08 7.07 -36.91 -0.26 -0.34 16
7 C 0.60 1.90 7.80 -12.71 -0.10 1.80 16
8 O -0.51 -2.89 16.43 5.23 0.09 -2.80 16
9 N -0.71 -0.45 5.35 -54.14 -0.29 -0.74 16
10 C 0.12 -0.07 4.24 -67.03 -0.28 -0.36 16
11 H 0.13 -0.03 7.46 -51.93 -0.39 -0.41 16
12 C -0.12 0.11 7.15 -25.91 -0.19 -0.08 16
13 C -0.14 0.25 4.14 -90.96 -0.38 -0.13 16
14 H 0.12 -0.47 8.14 -51.93 -0.42 -0.90 16
15 C 0.53 0.36 7.63 -10.99 -0.08 0.28 16
16 N -0.85 2.11 8.87 31.22 0.28 2.39 16
17 O -0.54 -2.88 16.75 5.56 0.09 -2.79 16
18 C -0.14 0.23 7.44 -25.83 -0.19 0.04 16
19 C -0.10 -0.33 10.68 -37.23 -0.40 -0.73 16
20 C -0.08 -0.23 6.16 -105.21 -0.65 -0.88 16
21 C -0.10 -0.07 5.26 -104.63 -0.55 -0.62 16
22 C -0.07 0.00 2.70 36.01 0.10 0.09 16
23 O -0.54 -0.24 12.88 -35.23 -0.45 -0.70 16
24 Si 0.69 -0.97 29.93 -169.99 -5.09 -6.06 16
25 C -0.09 0.10 8.62 -39.96 -0.34 -0.24 16
26 C -0.18 0.15 9.03 -39.38 -0.36 -0.20 16
27 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16
28 H 0.06 -0.23 7.66 -51.93 -0.40 -0.63 16
29 H 0.06 -0.25 7.66 -51.93 -0.40 -0.64 16
30 H 0.41 -0.16 8.44 -40.82 -0.34 -0.50 16
31 H 0.10 0.05 7.43 -51.93 -0.39 -0.34 16
32 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16
33 H 0.40 -1.10 8.93 -40.82 -0.36 -1.46 16
34 H 0.40 -2.13 8.83 -40.82 -0.36 -2.49 16
35 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16
36 H 0.09 -0.08 8.09 -51.93 -0.42 -0.50 16
37 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16
38 H 0.11 0.09 7.96 -51.93 -0.41 -0.33 16
39 H 0.38 -1.36 8.70 45.56 0.40 -0.96 16
40 H -0.25 -0.25 7.11 56.52 0.40 0.15 16
41 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16
42 H 0.14 -0.58 5.07 -52.49 -0.27 -0.85 16
43 H 0.15 -0.56 6.26 -52.48 -0.33 -0.88 16
LS Contribution 370.11 15.07 5.58 5.58
Total: 0.00 -11.64 370.11 -8.19 -19.83
By element:
Atomic # 1 Polarization: -7.85 SS G_CDS: -4.98 Total: -12.84 kcal
Atomic # 6 Polarization: 2.67 SS G_CDS: -3.23 Total: -0.56 kcal
Atomic # 7 Polarization: 1.66 SS G_CDS: -0.01 Total: 1.65 kcal
Atomic # 8 Polarization: -7.14 SS G_CDS: -0.45 Total: -7.60 kcal
Atomic # 14 Polarization: -0.97 SS G_CDS: -5.09 Total: -6.06 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -11.64 -8.19 -19.83 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
m_22_11684966_6672420.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.952 kcal
(2) G-P(sol) polarization free energy of solvation -11.636 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.827 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.779 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds