Wall clock time and date at job start Thu Mar 4 2021 15:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86308 * 109.47074 * 2 1 4 4 C 1.50704 * 109.47324 * 120.00020 * 2 1 3 5 5 C 1.34998 * 126.42864 * 210.00316 * 4 2 1 6 6 N 1.33585 * 108.65425 * 179.97438 * 5 4 2 7 7 C 1.32421 * 109.22484 * 359.97438 * 6 5 4 8 8 C 1.41242 * 132.11801 * 180.02562 * 7 6 5 9 9 Br 1.89096 * 120.25823 * 359.97438 * 8 7 6 10 10 C 1.35707 * 119.48975 * 179.74086 * 8 7 6 11 11 C 1.41771 * 119.52952 * 0.50894 * 10 8 7 12 12 C 1.47572 * 120.00789 * 179.76252 * 11 10 8 13 13 O 1.21588 * 119.99786 * 179.72079 * 12 11 10 14 14 N 1.34776 * 120.00356 * 359.72638 * 12 11 10 15 15 C 1.46493 * 120.00106 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.90683 * 336.24956 * 15 14 12 17 17 C 1.53787 * 113.61508 * 107.49958 * 15 14 12 18 18 C 1.53787 * 87.08055 * 139.97969 * 17 15 14 19 19 H 1.09005 * 113.68479 * 89.12683 * 18 17 15 20 20 N 1.46496 * 113.61222 * 220.01649 * 18 17 15 21 21 C 1.34773 * 119.99973 * 252.49566 * 20 18 17 22 22 O 1.21516 * 120.00324 * 359.73101 * 21 20 18 23 23 O 1.34644 * 120.00016 * 180.02562 * 21 20 18 24 24 C 1.45199 * 117.00135 * 179.72609 * 23 21 20 25 25 C 1.50697 * 109.46937 * 179.97438 * 24 23 21 26 26 C 1.38236 * 120.00224 * 269.72444 * 25 24 23 27 27 C 1.38234 * 119.99842 * 179.78529 * 26 25 24 28 28 C 1.38239 * 120.00235 * 0.45355 * 27 26 25 29 29 C 1.38232 * 119.99572 * 359.80171 * 28 27 26 30 30 C 1.38230 * 120.00377 * 359.97438 * 29 28 27 31 31 C 1.53777 * 87.08122 * 334.57072 * 18 17 15 32 32 C 1.36502 * 119.97732 * 359.48530 * 11 10 8 33 33 N 1.35943 * 120.50270 * 0.25426 * 32 11 10 34 34 H 0.96697 * 114.00344 * 300.00216 * 1 2 3 35 35 H 1.08995 * 109.47282 * 240.00449 * 2 1 3 36 36 H 1.48505 * 109.99569 * 178.68083 * 3 2 1 37 37 H 1.48495 * 109.99760 * 299.99698 * 3 2 1 38 38 H 1.08000 * 125.67741 * 359.97303 * 5 4 2 39 39 H 1.07993 * 120.23878 * 180.25112 * 10 8 7 40 40 H 0.97004 * 119.99940 * 359.97438 * 14 12 11 41 41 H 1.08997 * 113.61236 * 25.42973 * 17 15 14 42 42 H 1.09000 * 113.60991 * 254.52553 * 17 15 14 43 43 H 0.97004 * 120.00009 * 72.50415 * 20 18 17 44 44 H 1.08997 * 109.46967 * 299.99882 * 24 23 21 45 45 H 1.09002 * 109.46640 * 60.00086 * 24 23 21 46 46 H 1.08002 * 120.00065 * 0.02562 * 26 25 24 47 47 H 1.08003 * 119.99908 * 180.27264 * 27 26 25 48 48 H 1.08000 * 119.99930 * 179.83501 * 28 27 26 49 49 H 1.07997 * 119.99822 * 180.02562 * 29 28 27 50 50 H 1.08002 * 120.00003 * 179.97438 * 30 29 28 51 51 H 1.09003 * 113.62078 * 139.98379 * 31 18 17 52 52 H 1.09007 * 113.61130 * 270.88137 * 31 18 17 53 53 H 1.07998 * 119.73966 * 180.23563 * 32 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0854 -0.4611 1.8850 6 7 3.1763 -1.2959 2.9240 7 6 2.1062 -2.0754 2.9519 8 6 1.7112 -3.1110 3.8274 9 35 2.8115 -3.5966 5.2866 10 6 0.5337 -3.7517 3.6161 11 6 -0.2765 -3.3791 2.5139 12 6 -1.5565 -4.0723 2.2712 13 8 -2.2536 -3.7493 1.3288 14 7 -1.9528 -5.0634 3.0941 15 6 -3.2237 -5.7511 2.8534 16 1 -3.9303 -5.1491 2.2820 17 6 -3.0576 -7.1821 2.3154 18 6 -4.2230 -7.5796 3.2367 19 1 -5.2034 -7.4782 2.7712 20 7 -4.0363 -8.8759 3.8931 21 6 -4.7636 -9.9407 3.5011 22 8 -5.5778 -9.8244 2.6065 23 8 -4.5924 -11.1320 4.1048 24 6 -5.4141 -12.2332 3.6351 25 6 -5.0853 -13.4761 4.4213 26 6 -4.0974 -14.3344 3.9762 27 6 -3.7929 -15.4722 4.6998 28 6 -4.4827 -15.7566 5.8635 29 6 -5.4743 -14.9010 6.3057 30 6 -5.7756 -13.7608 5.5847 31 6 -3.8323 -6.3811 4.1174 32 6 0.1251 -2.3753 1.6807 33 7 1.3021 -1.7298 1.8952 34 1 -0.3934 0.4417 0.7650 35 1 1.7923 -0.5137 -0.8900 36 1 3.5346 1.7703 0.0321 37 1 1.5615 2.4679 -1.2085 38 1 3.8141 0.2884 1.6139 39 1 0.2180 -4.5425 4.2803 40 1 -1.3965 -5.3213 3.8457 41 1 -2.1085 -7.6436 2.5880 42 1 -3.2873 -7.2790 1.2543 43 1 -3.3893 -8.9679 4.6099 44 1 -6.4666 -11.9847 3.7708 45 1 -5.2156 -12.4093 2.5779 46 1 -3.5608 -14.1141 3.0652 47 1 -3.0179 -16.1405 4.3544 48 1 -4.2466 -16.6469 6.4274 49 1 -6.0129 -15.1229 7.2151 50 1 -6.5506 -13.0926 5.9300 51 1 -4.6872 -5.8313 4.5111 52 1 -3.0950 -6.6237 4.8827 53 1 -0.4969 -2.0921 0.8444 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12109458_12335884.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:09:42 Heat of formation + Delta-G solvation = 16.720535 kcal Electronic energy + Delta-G solvation = -40480.775812 eV Core-core repulsion = 34947.190097 eV Total energy + Delta-G solvation = -5533.585715 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 501.078 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.27738 -41.85815 -41.30030 -40.23651 -39.68538 -38.43902 -37.99069 -37.48299 -35.68734 -35.21089 -33.97651 -33.02078 -32.36583 -31.87539 -31.77170 -30.25051 -27.77643 -26.92378 -26.78700 -26.45816 -24.74277 -24.09444 -23.56726 -22.79899 -22.51679 -22.19877 -21.79209 -21.37949 -19.79307 -19.49176 -18.63053 -18.41034 -18.19655 -17.83802 -17.66621 -17.62470 -17.45427 -17.11529 -16.44003 -16.26318 -16.18659 -16.07465 -16.02902 -15.90926 -15.73793 -15.63356 -15.21332 -14.81682 -14.71269 -14.65735 -14.46419 -14.26794 -14.06156 -13.93984 -13.69960 -13.50102 -13.43073 -13.35898 -13.33324 -13.02501 -12.68929 -12.46956 -12.40795 -12.15487 -12.14757 -12.10916 -12.04649 -11.73301 -11.72199 -11.53718 -11.35887 -11.33600 -11.24535 -10.89812 -10.34054 -10.18290 -9.99927 -9.89951 -9.89179 -9.09315 -4.95956 -0.90082 -0.37365 0.09852 0.20320 0.42699 0.96304 1.10563 1.22033 1.41530 1.64465 1.65992 1.78139 1.92965 2.02903 2.22874 2.76852 2.80440 3.06932 3.16835 3.22263 3.33155 3.40604 3.46074 3.47894 3.49094 3.70388 3.76737 3.79899 3.83417 3.89839 4.06119 4.11891 4.19582 4.22426 4.23825 4.26852 4.33860 4.41542 4.49968 4.53879 4.55967 4.61412 4.66726 4.67812 4.87642 4.88523 4.96421 4.96923 5.02232 5.07981 5.20860 5.25710 5.34173 5.48145 5.48951 5.53266 5.55738 5.56707 6.00547 6.29605 6.34748 6.41847 6.50469 6.98794 7.23100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.044 4.044 3 Si 0.804 3.196 4 C -0.081 4.081 5 C 0.035 3.965 6 N -0.494 5.494 7 C 0.227 3.773 8 C -0.081 4.081 9 Br 0.005 6.995 10 C -0.021 4.021 11 C -0.168 4.168 12 C 0.580 3.420 13 O -0.564 6.564 14 N -0.692 5.692 15 C 0.127 3.873 16 H 0.111 0.889 17 C -0.165 4.165 18 C 0.136 3.864 19 H 0.107 0.893 20 N -0.679 5.679 21 C 0.643 3.357 22 O -0.608 6.608 23 O -0.366 6.366 24 C 0.131 3.869 25 C -0.113 4.113 26 C -0.106 4.106 27 C -0.131 4.131 28 C -0.114 4.114 29 C -0.131 4.131 30 C -0.105 4.105 31 C -0.130 4.130 32 C 0.160 3.840 33 N -0.356 5.356 34 H 0.396 0.604 35 H 0.119 0.881 36 H -0.267 1.267 37 H -0.287 1.287 38 H 0.207 0.793 39 H 0.189 0.811 40 H 0.418 0.582 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.422 0.578 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.134 0.866 51 H 0.099 0.901 52 H 0.125 0.875 53 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -0.582 6.369 6.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.153 4.153 3 Si 0.705 3.295 4 C -0.192 4.192 5 C -0.114 4.114 6 N -0.213 5.213 7 C -0.019 4.019 8 C -0.163 4.163 9 Br 0.091 6.909 10 C -0.047 4.047 11 C -0.176 4.176 12 C 0.367 3.633 13 O -0.444 6.444 14 N -0.343 5.343 15 C 0.022 3.978 16 H 0.129 0.871 17 C -0.205 4.205 18 C 0.032 3.968 19 H 0.125 0.875 20 N -0.339 5.339 21 C 0.396 3.604 22 O -0.499 6.499 23 O -0.280 6.280 24 C 0.057 3.943 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.149 4.149 28 C -0.132 4.132 29 C -0.149 4.149 30 C -0.123 4.123 31 C -0.168 4.168 32 C 0.033 3.967 33 N -0.029 5.029 34 H 0.246 0.754 35 H 0.137 0.863 36 H -0.192 1.192 37 H -0.214 1.214 38 H 0.224 0.776 39 H 0.206 0.794 40 H 0.257 0.743 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.260 0.740 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.150 0.850 47 H 0.160 0.840 48 H 0.161 0.839 49 H 0.161 0.839 50 H 0.152 0.848 51 H 0.118 0.882 52 H 0.143 0.857 53 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.598 -0.254 5.377 5.416 hybrid contribution -0.282 -0.811 -0.924 1.261 sum 0.315 -1.065 4.453 4.589 Atomic orbital electron populations 1.86485 1.17100 1.81729 1.50736 1.25162 0.85180 1.11439 0.93513 0.93088 0.78604 0.72674 0.85121 1.22334 0.98005 0.96466 1.02409 1.22835 0.96605 1.00230 0.91766 1.70828 1.20100 1.08126 1.22250 1.20737 0.89817 0.99810 0.91489 1.20570 0.98500 0.99338 0.97932 1.96847 1.66828 1.90480 1.36792 1.21384 0.89964 0.97922 0.95417 1.19263 0.98315 1.00954 0.99032 1.17574 0.83963 0.79685 0.82115 1.90863 1.55925 1.66317 1.31250 1.45584 1.22741 1.35089 1.30933 1.22235 0.85577 0.91476 0.98558 0.87111 1.24060 1.00011 0.95964 1.00425 1.22341 0.99841 0.79617 0.95024 0.87500 1.44573 1.42256 1.06492 1.40546 1.18462 0.80383 0.81476 0.80085 1.91007 1.39511 1.85254 1.34125 1.86312 1.62843 1.17908 1.60958 1.21768 0.94127 0.80716 0.97724 1.19562 0.99252 0.95241 0.97316 1.21317 0.96110 0.94618 1.00359 1.21476 1.00527 0.97403 0.95524 1.21614 0.95309 0.99945 0.96341 1.21481 0.98252 0.94458 1.00673 1.21325 0.99520 0.97715 0.93717 1.23742 1.02796 0.93660 0.96613 1.22269 0.84987 0.90392 0.99037 1.42701 1.15047 1.24097 1.21076 0.75415 0.86349 1.19228 1.21378 0.77636 0.79391 0.74252 0.87633 0.91827 0.73980 0.90097 0.90315 0.85003 0.84006 0.83892 0.83900 0.84815 0.88208 0.85671 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.40 10.90 -148.98 -1.62 -0.23 16 2 C -0.04 0.13 3.06 71.24 0.22 0.35 16 3 Si 0.80 -4.50 31.34 68.60 2.15 -2.35 16 4 C -0.08 -0.04 6.24 41.01 0.26 0.21 16 5 C 0.04 0.08 10.44 83.68 0.87 0.95 16 6 N -0.49 -3.62 11.30 -194.12 -2.19 -5.81 16 7 C 0.23 1.12 7.59 134.18 1.02 2.14 16 8 C -0.08 -0.07 6.24 22.42 0.14 0.07 16 9 Br 0.01 0.00 33.72 -20.37 -0.69 -0.68 16 10 C -0.02 0.10 9.26 22.56 0.21 0.31 16 11 C -0.17 0.37 5.84 -20.35 -0.12 0.25 16 12 C 0.58 -0.59 7.76 86.71 0.67 0.08 16 13 O -0.56 -4.08 15.87 -3.99 -0.06 -4.14 16 14 N -0.69 5.49 5.31 -443.16 -2.35 3.13 16 15 C 0.13 -0.85 4.24 45.52 0.19 -0.66 16 16 H 0.11 -0.29 7.47 -2.39 -0.02 -0.31 16 17 C -0.16 0.82 7.68 31.12 0.24 1.06 16 18 C 0.14 -0.66 4.24 45.52 0.19 -0.47 16 19 H 0.11 -0.04 7.46 -2.38 -0.02 -0.06 16 20 N -0.68 2.35 5.36 -567.60 -3.04 -0.69 16 21 C 0.64 3.13 8.75 129.79 1.14 4.26 16 22 O -0.61 -7.46 15.73 19.79 0.31 -7.14 16 23 O -0.37 -1.47 10.25 -55.54 -0.57 -2.04 16 24 C 0.13 0.40 5.60 71.23 0.40 0.80 16 25 C -0.11 -0.25 5.52 -19.87 -0.11 -0.36 16 26 C -0.11 -0.13 9.70 22.27 0.22 0.09 16 27 C -0.13 0.06 10.05 22.27 0.22 0.28 16 28 C -0.11 0.12 10.05 22.27 0.22 0.35 16 29 C -0.13 0.09 10.05 22.27 0.22 0.31 16 30 C -0.10 -0.09 9.70 22.27 0.22 0.12 16 31 C -0.13 1.47 7.58 31.12 0.24 1.71 16 32 C 0.16 0.07 9.91 83.65 0.83 0.90 16 33 N -0.36 -0.80 2.93 -337.72 -0.99 -1.80 16 34 H 0.40 -3.72 8.70 -74.06 -0.64 -4.37 16 35 H 0.12 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H -0.27 0.66 6.80 99.48 0.68 1.34 16 37 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 38 H 0.21 -0.56 6.70 -2.91 -0.02 -0.58 16 39 H 0.19 -2.46 6.44 -2.91 -0.02 -2.48 16 40 H 0.42 -6.08 6.76 -92.71 -0.63 -6.70 16 41 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.42 -3.87 8.84 -92.71 -0.82 -4.69 16 44 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 45 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 46 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 47 H 0.14 -0.61 8.06 -2.91 -0.02 -0.64 16 48 H 0.14 -0.75 8.06 -2.91 -0.02 -0.78 16 49 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 50 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 51 H 0.10 -1.17 8.14 -2.39 -0.02 -1.18 16 52 H 0.13 -2.08 8.10 -2.38 -0.02 -2.10 16 53 H 0.19 0.17 6.19 -2.91 -0.02 0.16 16 Total: 0.00 -30.24 471.60 -2.63 -32.87 By element: Atomic # 1 Polarization: -22.83 SS G_CDS: -1.05 Total: -23.88 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 7.49 Total: 12.76 kcal Atomic # 7 Polarization: 3.41 SS G_CDS: -8.58 Total: -5.17 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.95 Total: -13.55 kcal Atomic # 14 Polarization: -4.50 SS G_CDS: 2.15 Total: -2.35 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.68 kcal Total: -30.24 -2.63 -32.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12109458_12335884.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.587 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds