Wall clock time and date at job start Thu Mar 4 2021 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99919 * 2 1 4 4 O 1.20821 * 119.99564 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00013 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.90879 * 48.75425 * 5 3 2 7 7 C 1.53786 * 113.61518 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.17350 * 140.02616 * 7 5 3 9 9 H 1.08998 * 113.61196 * 219.97759 * 8 7 5 10 10 N 1.46506 * 113.61613 * 89.15811 * 8 7 5 11 11 C 1.34774 * 119.99981 * 154.99882 * 10 8 7 12 12 O 1.21564 * 119.99936 * 0.02562 * 11 10 8 13 13 C 1.47706 * 119.99590 * 180.02562 * 11 10 8 14 14 N 1.31811 * 126.52118 * 0.02750 * 13 11 10 15 15 N 1.28471 * 110.06936 * 179.97438 * 14 13 11 16 16 C 1.46505 * 124.87978 * 179.97438 * 15 14 13 17 17 C 1.35026 * 110.23607 * 359.97438 * 15 14 13 18 18 C 1.50698 * 126.38833 * 180.02562 * 17 15 14 19 19 O 1.42904 * 109.47108 * 30.00363 * 18 17 15 20 20 Si 1.86298 * 109.47264 * 150.00223 * 18 17 15 21 21 C 1.35370 * 107.22753 * 359.76705 * 17 15 14 22 22 C 1.53781 * 87.08070 * 334.52830 * 8 7 5 23 23 H 1.08998 * 109.47143 * 299.99863 * 1 2 3 24 24 H 1.09005 * 109.46883 * 60.00147 * 1 2 3 25 25 H 1.09002 * 109.46788 * 179.97438 * 1 2 3 26 26 H 1.09002 * 113.61357 * 25.43533 * 7 5 3 27 27 H 1.09002 * 113.61608 * 254.61695 * 7 5 3 28 28 H 0.97003 * 119.99276 * 335.00814 * 10 8 7 29 29 H 1.09005 * 109.47147 * 90.02062 * 16 15 14 30 30 H 1.08994 * 109.47139 * 210.02068 * 16 15 14 31 31 H 1.09004 * 109.47227 * 330.02383 * 16 15 14 32 32 H 1.08998 * 109.47558 * 270.00955 * 18 17 15 33 33 H 0.96695 * 114.00124 * 179.97438 * 19 18 17 34 34 H 1.48498 * 110.00410 * 300.00475 * 20 18 17 35 35 H 1.48500 * 109.99802 * 61.32133 * 20 18 17 36 36 H 1.07997 * 127.24843 * 180.23774 * 21 17 15 37 37 H 1.09005 * 113.61471 * 139.98321 * 22 8 7 38 38 H 1.08996 * 113.61178 * 270.79663 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0249 0.6360 -0.7540 7 6 4.1077 2.7143 0.0011 8 6 5.1823 2.2287 0.9882 9 1 5.3976 2.9411 1.7845 10 7 6.3923 1.7218 0.3359 11 6 7.5689 1.7370 0.9930 12 8 7.6260 2.1709 2.1272 13 6 8.7888 1.2265 0.3351 14 7 8.8740 0.7307 -0.8832 15 7 10.0850 0.3826 -1.1338 16 6 10.5435 -0.2073 -2.3940 17 6 10.8744 0.6384 -0.0686 18 6 12.3545 0.3731 0.0315 19 8 12.9462 0.4792 -1.2649 20 14 13.1334 1.6219 1.1737 21 6 10.0895 1.1829 0.8905 22 6 4.1936 1.1250 1.3995 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.4171 3.4404 0.4300 27 1 4.5098 3.0300 -0.9616 28 1 6.3465 1.3755 -0.5690 29 1 10.8512 0.5858 -3.0756 30 1 11.3885 -0.8677 -2.1999 31 1 9.7317 -0.7786 -2.8444 32 1 12.5181 -0.6304 0.4244 33 1 13.9000 0.3207 -1.2761 34 1 12.9174 2.9942 0.6491 35 1 12.5491 1.5003 2.5335 36 1 10.3920 1.5124 1.8735 37 1 4.6650 0.1562 1.5653 38 1 3.5275 1.4161 2.2117 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12121848_13259642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:27:16 Heat of formation + Delta-G solvation = -39.269680 kcal Electronic energy + Delta-G solvation = -23535.967187 eV Core-core repulsion = 19769.393308 eV Total energy + Delta-G solvation = -3766.573879 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.96016 -42.07371 -40.86733 -39.17962 -37.87713 -37.48893 -34.80577 -34.23825 -32.79000 -29.59742 -28.64423 -27.18084 -26.90431 -26.56837 -24.56353 -22.55681 -22.32609 -21.09523 -20.49422 -18.99141 -18.54156 -18.36215 -18.03301 -17.58816 -17.47547 -17.39057 -17.03474 -16.13683 -15.86463 -15.69836 -15.29779 -15.11452 -15.05384 -14.70243 -14.33315 -13.98408 -13.84151 -13.64543 -13.50479 -13.43804 -13.20421 -13.00271 -12.89352 -12.17245 -12.09209 -11.94316 -11.88357 -11.82953 -11.50733 -11.43594 -10.92953 -10.44244 -10.17390 -9.94157 -5.01296 0.29057 0.66692 1.01863 1.19265 1.51803 1.67960 1.68325 1.90520 2.05683 2.12195 3.03553 3.11323 3.16374 3.24821 3.53282 3.59067 3.71264 3.90404 4.00636 4.23240 4.23707 4.25954 4.31722 4.36922 4.41436 4.44014 4.49705 4.57337 4.62958 4.66297 4.71346 4.72113 4.82381 4.91204 5.03937 5.29747 5.35639 5.57407 6.22640 6.60948 6.67713 6.84250 6.95623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.106 4.106 6 H 0.148 0.852 7 C -0.116 4.116 8 C 0.119 3.881 9 H 0.102 0.898 10 N -0.686 5.686 11 C 0.610 3.390 12 O -0.566 6.566 13 C -0.036 4.036 14 N -0.258 5.258 15 N -0.257 5.257 16 C 0.085 3.915 17 C 0.029 3.971 18 C -0.043 4.043 19 O -0.558 6.558 20 Si 0.809 3.191 21 C -0.217 4.217 22 C -0.125 4.125 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.128 0.872 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.418 0.582 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.415 0.585 34 H -0.312 1.312 35 H -0.293 1.293 36 H 0.155 0.845 37 H 0.090 0.910 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 -6.504 -4.668 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.125 4.125 6 H 0.165 0.835 7 C -0.154 4.154 8 C 0.013 3.987 9 H 0.120 0.880 10 N -0.338 5.338 11 C 0.395 3.605 12 O -0.443 6.443 13 C -0.194 4.194 14 N -0.096 5.096 15 N -0.046 5.046 16 C -0.053 4.053 17 C -0.097 4.097 18 C -0.153 4.153 19 O -0.370 6.370 20 Si 0.715 3.285 21 C -0.245 4.245 22 C -0.164 4.164 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.146 0.854 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.256 0.744 29 H 0.112 0.888 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.269 0.731 34 H -0.240 1.240 35 H -0.221 1.221 36 H 0.172 0.828 37 H 0.109 0.891 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.340 -5.417 -4.608 8.893 hybrid contribution -0.676 0.112 0.253 0.730 sum 4.664 -5.305 -4.355 8.299 Atomic orbital electron populations 1.23534 0.75027 1.05612 1.02480 1.86525 1.24791 1.33146 1.83470 1.24004 0.92464 0.81034 0.70982 1.90669 1.67837 1.37404 1.46682 1.22790 0.86032 1.01407 1.02261 0.83476 1.23286 0.96070 0.94752 1.01266 1.21821 0.83260 0.96767 0.96813 0.87999 1.45381 1.06235 1.63170 1.18973 1.16947 0.82056 0.77058 0.84430 1.90792 1.86055 1.48244 1.19161 1.21701 0.95329 1.09296 0.93086 1.73448 1.03904 1.15913 1.16333 1.45794 1.03226 1.41477 1.14095 1.22607 1.02616 1.00179 0.79860 1.21439 0.95033 1.04286 0.88901 1.24356 0.86493 1.10535 0.93958 1.86351 1.29817 1.94880 1.25917 0.94584 0.86263 0.74120 0.73568 1.21527 0.92402 1.08551 1.02012 1.23404 0.97297 1.00935 0.94757 0.92064 0.91949 0.85362 0.87612 0.88290 0.74403 0.88801 0.85777 0.87747 0.86346 0.73091 1.24021 1.22102 0.82769 0.89110 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.40 10.57 -51.45 -0.54 -1.94 16 3 C 0.47 2.33 7.49 71.23 0.53 2.87 16 4 O -0.54 -5.90 15.65 21.98 0.34 -5.56 16 5 C -0.11 0.09 4.15 -10.92 -0.05 0.04 16 6 H 0.15 -0.76 8.14 -2.39 -0.02 -0.78 16 7 C -0.12 0.06 7.14 31.12 0.22 0.28 16 8 C 0.12 0.23 4.32 45.52 0.20 0.43 16 9 H 0.10 0.55 7.46 -2.39 -0.02 0.53 16 10 N -0.69 -2.28 5.26 -443.04 -2.33 -4.61 16 11 C 0.61 6.53 7.82 86.75 0.68 7.21 16 12 O -0.57 -9.96 16.52 -3.92 -0.06 -10.02 16 13 C -0.04 -0.36 7.13 42.46 0.30 -0.06 16 14 N -0.26 -1.69 11.67 -48.18 -0.56 -2.25 16 15 N -0.26 -0.80 3.70 -355.92 -1.32 -2.11 16 16 C 0.09 -0.46 10.12 127.77 1.29 0.83 16 17 C 0.03 0.11 6.22 41.40 0.26 0.36 16 18 C -0.04 0.23 2.87 71.24 0.20 0.44 16 19 O -0.56 5.03 10.38 -148.98 -1.55 3.48 16 20 Si 0.81 -3.09 31.30 68.60 2.15 -0.94 16 21 C -0.22 -2.00 9.35 22.41 0.21 -1.79 16 22 C -0.13 0.00 7.44 31.21 0.23 0.23 16 23 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 24 H 0.06 0.02 8.13 -2.38 -0.02 0.00 16 25 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.11 0.19 7.43 -2.39 -0.02 0.17 16 27 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.42 -0.32 8.43 -92.71 -0.78 -1.11 16 29 H 0.09 -0.57 8.14 -2.38 -0.02 -0.59 16 30 H 0.12 -1.13 6.77 -2.39 -0.02 -1.15 16 31 H 0.10 -0.82 8.14 -2.38 -0.02 -0.84 16 32 H 0.12 -1.28 7.96 -2.39 -0.02 -1.30 16 33 H 0.42 -8.11 8.74 -74.06 -0.65 -8.76 16 34 H -0.31 -1.98 7.11 99.48 0.71 -1.28 16 35 H -0.29 -0.98 6.94 99.48 0.69 -0.29 16 36 H 0.15 1.54 6.90 -2.91 -0.02 1.52 16 37 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 38 H 0.10 0.02 8.10 -2.39 -0.02 0.00 16 Total: 0.00 -27.99 330.63 1.11 -26.88 By element: Atomic # 1 Polarization: -14.65 SS G_CDS: -0.30 Total: -14.95 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.28 Total: 12.02 kcal Atomic # 7 Polarization: -4.76 SS G_CDS: -4.21 Total: -8.97 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.81 Total: -14.05 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.15 Total: -0.94 kcal Total: -27.99 1.11 -26.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12121848_13259642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.390 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds