Wall clock time and date at job start Thu Mar 4 2021 13:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37647 * 125.68398 * 2 1 4 4 C 1.46685 * 126.22997 * 0.02562 * 3 2 1 5 5 O 1.21699 * 119.99971 * 5.28823 * 4 3 2 6 6 N 1.34775 * 119.99940 * 185.01100 * 4 3 2 7 7 C 1.46502 * 119.99913 * 175.20652 * 6 4 3 8 8 C 1.53000 * 109.47083 * 180.02562 * 7 6 4 9 9 H 1.09003 * 112.84780 * 43.80614 * 8 7 6 10 10 C 1.53779 * 113.61260 * 175.00049 * 8 7 6 11 11 C 1.53781 * 87.07920 * 139.98195 * 10 8 7 12 12 H 1.08997 * 113.61869 * 89.11609 * 11 10 8 13 13 C 1.50701 * 113.61575 * 220.01898 * 11 10 8 14 14 C 1.38242 * 120.00099 * 59.72549 * 13 11 10 15 15 C 1.38228 * 120.00088 * 179.81396 * 14 13 11 16 16 C 1.38234 * 120.00008 * 0.39493 * 15 14 13 17 17 C 1.38235 * 120.00289 * 359.86080 * 16 15 14 18 18 C 1.38235 * 119.99676 * 359.95207 * 17 16 15 19 19 C 1.53778 * 87.08370 * 334.56608 * 11 10 8 20 20 C 1.37864 * 107.54018 * 180.26190 * 3 2 1 21 21 C 1.39841 * 107.08186 * 359.58514 * 20 3 2 22 22 C 1.35448 * 107.86540 * 0.41545 * 21 20 3 23 23 C 1.50702 * 125.56434 * 179.75877 * 22 21 20 24 24 O 1.42899 * 109.46709 * 149.98236 * 23 22 21 25 25 Si 1.86290 * 109.47102 * 29.98187 * 23 22 21 26 26 H 1.09000 * 109.47086 * 95.77697 * 1 2 3 27 27 H 1.08993 * 109.47418 * 215.77734 * 1 2 3 28 28 H 1.09002 * 109.47028 * 335.78309 * 1 2 3 29 29 H 0.96996 * 120.00295 * 355.20593 * 6 4 3 30 30 H 1.09000 * 109.47263 * 300.00257 * 7 6 4 31 31 H 1.09004 * 109.46958 * 60.00193 * 7 6 4 32 32 H 1.09000 * 113.61786 * 254.53210 * 10 8 7 33 33 H 1.08999 * 113.61382 * 25.35163 * 10 8 7 34 34 H 1.08005 * 119.99453 * 0.02562 * 14 13 11 35 35 H 1.07998 * 119.99980 * 180.23549 * 15 14 13 36 36 H 1.08004 * 120.00397 * 179.83872 * 16 15 14 37 37 H 1.07998 * 120.00212 * 179.97438 * 17 16 15 38 38 H 1.08004 * 119.99922 * 180.02562 * 18 17 16 39 39 H 1.09006 * 113.61762 * 270.88670 * 19 11 10 40 40 H 1.08998 * 113.61926 * 139.97989 * 19 11 10 41 41 H 1.08005 * 126.46360 * 179.70203 * 20 3 2 42 42 H 1.07999 * 126.06612 * 180.15856 * 21 20 3 43 43 H 1.09004 * 109.46742 * 269.97636 * 23 22 21 44 44 H 0.96710 * 114.00151 * 180.02562 * 24 23 22 45 45 H 1.48497 * 110.00238 * 59.99878 * 25 23 22 46 46 H 1.48500 * 109.99985 * 181.32046 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2678 1.1180 0.0000 4 6 1.8125 2.5124 0.0005 5 8 0.6260 2.7650 0.0982 6 7 2.7085 3.5140 -0.1015 7 6 2.2482 4.9008 -0.2068 8 6 3.4570 5.8330 -0.3103 9 1 4.2205 5.4615 -0.9938 10 6 3.0811 7.3051 -0.5477 11 6 4.2085 7.6692 0.4326 12 1 5.1786 7.8003 -0.0467 13 6 3.8568 8.8007 1.3638 14 6 2.7760 8.6827 2.2176 15 6 2.4556 9.7189 3.0745 16 6 3.2112 10.8765 3.0719 17 6 4.2888 10.9967 2.2145 18 6 4.6114 9.9589 1.3603 19 6 4.0116 6.2764 1.0538 20 6 3.5779 0.6887 -0.0060 21 6 3.5521 -0.7094 0.0000 22 6 2.2554 -1.1010 0.0001 23 6 1.7708 -2.5280 0.0005 24 8 0.5130 -2.6036 0.6745 25 14 3.0115 -3.6049 0.8786 26 1 -0.3633 -0.1034 -1.0224 27 1 -0.3634 -0.8337 0.6008 28 1 -0.3633 0.9372 0.4215 29 1 3.6582 3.3166 -0.1052 30 1 1.6275 5.0111 -1.0960 31 1 1.6651 5.1582 0.6775 32 1 3.2632 7.6432 -1.5678 33 1 2.0860 7.5653 -0.1869 34 1 2.1839 7.7794 2.2175 35 1 1.6136 9.6252 3.7442 36 1 2.9594 11.6873 3.7396 37 1 4.8788 11.9013 2.2122 38 1 5.4536 10.0526 0.6907 39 1 3.2714 6.2556 1.8537 40 1 4.9449 5.7839 1.3266 41 1 4.4584 1.3143 -0.0121 42 1 4.4131 -1.3613 0.0001 43 1 1.6536 -2.8722 -1.0271 44 1 0.1404 -3.4952 0.7133 45 1 3.1803 -3.1459 2.2808 46 1 2.5607 -5.0197 0.8581 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:23:54 Heat of formation + Delta-G solvation = 35.976040 kcal Electronic energy + Delta-G solvation = -26637.732054 eV Core-core repulsion = 22881.457710 eV Total energy + Delta-G solvation = -3756.274344 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54739 -41.20339 -40.18218 -38.88918 -37.88027 -35.80305 -33.78368 -32.41081 -31.79057 -31.50172 -28.99776 -27.48385 -26.65617 -26.46716 -24.59195 -23.54213 -23.03659 -21.88902 -21.42720 -20.42641 -19.97152 -18.82031 -18.53395 -17.80348 -17.20746 -16.89644 -16.81698 -16.39147 -16.21253 -15.97765 -15.73106 -15.40814 -15.16065 -14.78101 -14.61004 -14.41384 -14.36696 -14.18954 -13.99671 -13.92819 -13.64229 -13.37352 -13.19110 -13.07865 -13.00333 -12.66114 -12.57181 -12.33328 -12.09240 -12.02633 -11.47796 -11.40363 -11.25750 -11.02957 -10.75287 -10.21402 -9.82554 -9.73450 -9.54123 -9.04953 -4.87135 0.36186 0.43775 0.49426 1.19110 1.58284 1.69204 1.79054 2.04541 2.32242 2.37067 2.84383 3.09141 3.53696 3.60269 3.62109 3.68473 3.82032 3.99843 4.00985 4.06063 4.11863 4.18309 4.27466 4.28491 4.31094 4.38355 4.41355 4.48597 4.58063 4.61914 4.63418 4.71644 4.76992 4.83860 4.90213 4.94763 5.08834 5.11418 5.12268 5.15345 5.17815 5.22183 5.36572 5.50699 5.59263 5.63850 5.77368 5.78711 6.01487 6.12819 6.15143 6.46788 6.51439 7.11761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.408 5.408 3 C -0.090 4.090 4 C 0.583 3.417 5 O -0.593 6.593 6 N -0.700 5.700 7 C 0.134 3.866 8 C -0.109 4.109 9 H 0.120 0.880 10 C -0.119 4.119 11 C -0.071 4.071 12 H 0.112 0.888 13 C -0.078 4.078 14 C -0.130 4.130 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.206 4.206 22 C 0.042 3.958 23 C -0.070 4.070 24 O -0.561 6.561 25 Si 0.812 3.188 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.418 0.582 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.102 0.898 44 H 0.399 0.601 45 H -0.309 1.309 46 H -0.280 1.280 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 -2.301 -2.950 7.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.081 5.081 3 C -0.203 4.203 4 C 0.372 3.628 5 O -0.476 6.476 6 N -0.352 5.352 7 C 0.011 3.989 8 C -0.127 4.127 9 H 0.138 0.862 10 C -0.157 4.157 11 C -0.089 4.089 12 H 0.130 0.870 13 C -0.078 4.078 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.164 4.164 20 C -0.149 4.149 21 C -0.229 4.229 22 C -0.076 4.076 23 C -0.177 4.177 24 O -0.373 6.373 25 Si 0.715 3.285 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.256 0.744 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.197 0.803 42 H 0.204 0.796 43 H 0.119 0.881 44 H 0.252 0.748 45 H -0.237 1.237 46 H -0.206 1.206 Dipole moment (debyes) X Y Z Total from point charges 5.394 -1.968 -2.205 6.151 hybrid contribution -1.487 -0.111 0.354 1.532 sum 3.908 -2.079 -1.851 4.798 Atomic orbital electron populations 1.22424 0.76242 1.05418 1.03791 1.43914 1.07143 1.04820 1.52243 1.20250 0.91724 0.87224 1.21126 1.17274 0.85298 0.84509 0.75694 1.90756 1.18311 1.85468 1.53046 1.45493 1.10222 1.05701 1.73796 1.21390 0.97025 0.79160 1.01320 1.22735 0.96952 0.94062 0.98992 0.86207 1.22993 0.98448 0.94213 1.00070 1.21533 1.00086 0.91807 0.95503 0.86998 1.19957 0.95247 0.95665 0.96941 1.21193 0.97727 0.99251 0.96574 1.21408 1.00261 0.94030 0.99385 1.21429 0.96113 0.98365 0.99792 1.21454 0.97611 0.99567 0.96130 1.21354 1.00356 0.93347 0.99587 1.23180 1.02016 0.95001 0.96209 1.21725 0.94236 0.95725 1.03189 1.20975 0.95033 0.95686 1.11179 1.20616 0.91321 0.87596 1.08078 1.24948 0.93447 0.96125 1.03201 1.86447 1.35059 1.36051 1.79712 0.93431 0.83773 0.73265 0.78071 0.90989 0.87400 0.89936 0.74410 0.92161 0.92541 0.90016 0.90445 0.85688 0.85269 0.85034 0.84718 0.84633 0.90447 0.89874 0.80292 0.79560 0.88055 0.74834 1.23659 1.20620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 10.32 127.77 1.32 1.83 16 2 N -0.41 -3.46 3.16 -519.73 -1.64 -5.10 16 3 C -0.09 -0.66 6.89 40.35 0.28 -0.38 16 4 C 0.58 5.23 7.77 86.45 0.67 5.90 16 5 O -0.59 -9.95 14.55 -4.35 -0.06 -10.01 16 6 N -0.70 -0.55 5.54 -467.06 -2.59 -3.14 16 7 C 0.13 0.04 5.51 86.38 0.48 0.52 16 8 C -0.11 0.56 3.75 -10.27 -0.04 0.53 16 9 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 10 C -0.12 0.41 7.10 31.12 0.22 0.63 16 11 C -0.07 0.22 3.98 -11.01 -0.04 0.18 16 12 H 0.11 -0.61 8.10 -2.39 -0.02 -0.63 16 13 C -0.08 -0.11 5.29 -19.86 -0.11 -0.21 16 14 C -0.13 -0.36 8.60 22.27 0.19 -0.17 16 15 C -0.13 -0.43 10.05 22.27 0.22 -0.21 16 16 C -0.14 -0.39 10.05 22.27 0.22 -0.16 16 17 C -0.13 -0.27 10.05 22.27 0.22 -0.05 16 18 C -0.13 -0.19 9.71 22.27 0.22 0.02 16 19 C -0.13 0.51 7.01 31.12 0.22 0.73 16 20 C -0.12 -0.06 10.35 22.57 0.23 0.17 16 21 C -0.21 0.07 9.37 22.01 0.21 0.27 16 22 C 0.04 0.16 6.18 41.34 0.26 0.41 16 23 C -0.07 0.10 2.98 71.24 0.21 0.32 16 24 O -0.56 -0.23 9.81 -148.98 -1.46 -1.69 16 25 Si 0.81 -3.28 31.10 68.60 2.13 -1.14 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.11 0.73 5.48 -2.39 -0.01 0.72 16 28 H 0.08 1.02 5.91 -2.39 -0.01 1.01 16 29 H 0.42 -2.35 7.37 -92.71 -0.68 -3.04 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 0.20 7.85 -2.38 -0.02 0.18 16 32 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.08 -0.08 7.68 -2.39 -0.02 -0.10 16 34 H 0.13 0.13 6.67 -2.91 -0.02 0.11 16 35 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 36 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 37 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 38 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 39 H 0.08 -0.12 6.08 -2.38 -0.01 -0.13 16 40 H 0.08 -0.48 8.14 -2.39 -0.02 -0.49 16 41 H 0.18 -1.30 7.45 -2.91 -0.02 -1.32 16 42 H 0.19 -1.51 6.85 -2.91 -0.02 -1.53 16 43 H 0.10 -0.56 7.96 -2.38 -0.02 -0.58 16 44 H 0.40 -3.21 8.74 -74.05 -0.65 -3.86 16 45 H -0.31 -1.68 7.11 99.48 0.71 -0.97 16 46 H -0.28 0.22 7.11 99.48 0.71 0.92 16 Total: 0.00 -22.98 372.41 1.08 -21.91 By element: Atomic # 1 Polarization: -10.87 SS G_CDS: -0.29 Total: -11.16 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 4.98 Total: 10.34 kcal Atomic # 7 Polarization: -4.01 SS G_CDS: -4.23 Total: -8.24 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.52 Total: -11.70 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.13 Total: -1.14 kcal Total: -22.98 1.08 -21.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.882 kcal (2) G-P(sol) polarization free energy of solvation -22.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds