Wall clock time and date at job start Thu Mar 4 2021 13:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50701 * 109.46937 * 239.99996 * 2 1 3 5 5 C 1.34184 * 125.43606 * 299.71563 * 4 2 1 6 6 C 1.47019 * 105.95247 * 179.97438 * 5 4 2 7 7 C 1.47378 * 127.19186 * 180.09342 * 6 5 4 8 8 O 1.21605 * 120.00285 * 0.27290 * 7 6 5 9 9 N 1.34781 * 120.00056 * 180.27076 * 7 6 5 10 10 C 1.46497 * 120.00188 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47135 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85110 * 316.19936 * 11 10 9 13 13 C 1.53777 * 113.61292 * 87.50529 * 11 10 9 14 14 C 1.53783 * 87.08183 * 139.97963 * 13 11 10 15 15 H 1.08998 * 113.61593 * 89.11456 * 14 13 11 16 16 C 1.50697 * 113.61297 * 220.01834 * 14 13 11 17 17 C 1.38230 * 120.00332 * 37.22802 * 16 14 13 18 18 C 1.38234 * 120.00345 * 179.80869 * 17 16 14 19 19 C 1.38237 * 119.99768 * 0.39584 * 18 17 16 20 20 C 1.38231 * 120.00086 * 359.85349 * 19 18 17 21 21 C 1.38236 * 119.99935 * 217.49402 * 16 14 13 22 22 C 1.53777 * 113.61383 * 185.00424 * 11 10 9 23 23 C 1.36423 * 105.61420 * 0.34246 * 6 5 4 24 24 O 1.33649 * 108.39974 * 359.78774 * 23 6 5 25 25 H 0.96705 * 113.99788 * 60.00015 * 1 2 3 26 26 H 1.09001 * 109.47103 * 120.00361 * 2 1 3 27 27 H 1.48493 * 110.00101 * 59.99933 * 3 2 1 28 28 H 1.48502 * 109.99925 * 181.31928 * 3 2 1 29 29 H 1.07999 * 127.02401 * 0.02562 * 5 4 2 30 30 H 0.97006 * 119.99562 * 359.97438 * 9 7 6 31 31 H 1.08994 * 109.47119 * 300.00080 * 10 9 7 32 32 H 1.09009 * 109.46765 * 60.00216 * 10 9 7 33 33 H 1.08997 * 113.61387 * 254.52638 * 13 11 10 34 34 H 1.09000 * 113.61527 * 25.42927 * 13 11 10 35 35 H 1.08000 * 119.99737 * 359.97438 * 17 16 14 36 36 H 1.08005 * 120.00446 * 180.22860 * 18 17 16 37 37 H 1.08006 * 119.99852 * 179.83682 * 19 18 17 38 38 H 1.07997 * 120.00346 * 179.97438 * 20 19 18 39 39 H 1.08007 * 119.99883 * 359.97438 * 21 16 14 40 40 H 1.09009 * 113.61464 * 334.56432 * 22 11 10 41 41 H 1.09001 * 113.62152 * 105.47036 * 22 11 10 42 42 H 1.08001 * 125.79694 * 179.82228 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6797 -1.9898 -1.5474 6 6 2.3703 -2.2337 -2.8222 7 6 2.4006 -3.4894 -3.5930 8 8 1.8044 -4.4677 -3.1852 9 7 3.0890 -3.5536 -4.7499 10 6 3.1196 -4.8020 -5.5159 11 6 3.9632 -4.6060 -6.7772 12 1 3.7543 -3.6637 -7.2838 13 6 5.4623 -4.8735 -6.5633 14 6 5.4570 -5.5548 -7.9420 15 1 5.6580 -4.8719 -8.7673 16 6 6.2936 -6.8070 -7.9997 17 6 6.3368 -7.6601 -6.9129 18 6 7.1011 -8.8107 -6.9673 19 6 7.8286 -9.1040 -8.1055 20 6 7.7895 -8.2483 -9.1904 21 6 7.0221 -7.0997 -9.1374 22 6 3.9599 -5.8240 -7.7159 23 6 2.9819 -1.0562 -3.1396 24 8 2.7076 -0.1665 -2.1808 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 0.8900 27 1 1.5616 2.4679 1.2084 28 1 3.5347 1.7702 -0.0321 29 1 1.0896 -2.6959 -0.9820 30 1 3.5643 -2.7730 -5.0754 31 1 3.5565 -5.5922 -4.9053 32 1 2.1041 -5.0801 -5.7980 33 1 6.0667 -3.9672 -6.5266 34 1 5.6709 -5.5562 -5.7396 35 1 5.7714 -7.4290 -6.0222 36 1 7.1319 -9.4791 -6.1195 37 1 8.4278 -10.0016 -8.1470 38 1 8.3582 -8.4772 -10.0796 39 1 6.9914 -6.4311 -9.9852 40 1 3.7578 -6.7667 -7.2072 41 1 3.3515 -5.6851 -8.6095 42 1 3.5848 -0.8740 -4.0169 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:26:35 Heat of formation + Delta-G solvation = 1.379005 kcal Electronic energy + Delta-G solvation = -24430.371206 eV Core-core repulsion = 20730.415579 eV Total energy + Delta-G solvation = -3699.955627 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.71778 -41.25913 -40.39199 -38.90519 -38.00814 -35.70990 -33.98561 -32.38416 -31.81949 -31.67487 -28.92402 -26.67347 -26.58967 -25.27901 -23.99382 -23.53483 -22.32176 -21.88001 -20.99451 -20.01442 -19.33141 -18.03402 -17.72309 -17.51420 -17.31858 -16.97853 -16.56457 -16.29759 -16.06841 -15.94841 -15.66947 -15.41396 -14.85655 -14.63868 -14.40216 -14.25563 -14.19417 -14.03254 -13.93935 -13.60176 -13.37003 -13.05305 -12.82021 -12.67195 -12.33711 -12.21403 -12.02901 -11.49937 -11.46438 -11.26801 -11.04516 -10.97415 -10.63946 -10.19909 -9.82900 -9.77395 -9.54448 -4.97731 0.26512 0.43477 0.49038 0.81112 1.18969 1.51312 1.82369 1.94696 2.06405 2.24444 2.84010 3.29783 3.47287 3.57305 3.59546 3.60349 3.70014 3.97635 4.00740 4.05770 4.11660 4.17816 4.26705 4.27597 4.31735 4.41981 4.48649 4.50913 4.62192 4.63503 4.73945 4.84316 4.89276 4.90528 4.95353 5.09159 5.11507 5.12318 5.15203 5.21780 5.35244 5.50577 5.58938 5.63647 5.78271 5.83331 6.12518 6.47272 6.62844 7.14272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.038 4.038 3 Si 0.801 3.199 4 C -0.052 4.052 5 C -0.154 4.154 6 C -0.270 4.270 7 C 0.583 3.417 8 O -0.591 6.591 9 N -0.706 5.706 10 C 0.131 3.869 11 C -0.108 4.108 12 H 0.122 0.878 13 C -0.126 4.126 14 C -0.072 4.072 15 H 0.112 0.888 16 C -0.078 4.078 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.139 4.139 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.121 4.121 23 C 0.068 3.932 24 O -0.163 6.163 25 H 0.400 0.600 26 H 0.129 0.871 27 H -0.285 1.285 28 H -0.287 1.287 29 H 0.141 0.859 30 H 0.417 0.583 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 6.120 -6.015 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.147 4.147 3 Si 0.704 3.296 4 C -0.100 4.100 5 C -0.174 4.174 6 C -0.274 4.274 7 C 0.372 3.628 8 O -0.473 6.473 9 N -0.358 5.358 10 C 0.008 3.992 11 C -0.126 4.126 12 H 0.140 0.860 13 C -0.164 4.164 14 C -0.090 4.090 15 H 0.130 0.870 16 C -0.078 4.078 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.003 4.003 24 O -0.059 6.059 25 H 0.251 0.749 26 H 0.146 0.854 27 H -0.212 1.212 28 H -0.213 1.213 29 H 0.159 0.841 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.126 5.989 -4.759 8.263 hybrid contribution 0.155 -1.278 0.242 1.310 sum 3.281 4.711 -4.517 7.305 Atomic orbital electron populations 1.86545 1.16235 1.82263 1.50335 1.24692 0.85317 1.12331 0.92371 0.93168 0.77809 0.73672 0.84950 1.22768 0.99541 0.93552 0.94164 1.22556 1.02403 0.96106 0.96344 1.21476 1.10031 0.95925 1.00001 1.17564 0.78065 0.86459 0.80719 1.90789 1.46798 1.38995 1.70675 1.45652 1.52172 1.15930 1.22066 1.21384 1.00280 0.85732 0.91837 1.22731 0.94745 1.00728 0.94400 0.85983 1.23184 0.95729 1.01202 0.96251 1.21542 0.94062 0.93932 0.99465 0.86984 1.19961 0.97455 0.96638 0.93775 1.21197 0.99806 0.94852 0.98884 1.21416 0.97335 0.97615 0.98733 1.21429 1.00025 1.00383 0.93900 1.21454 0.99332 0.94894 0.99120 1.21357 0.97164 0.97801 0.98350 1.23005 0.95381 0.97849 0.99695 1.25334 0.97088 0.85185 0.92646 1.83714 1.54097 1.40091 1.27967 0.74885 0.85415 1.21229 1.21332 0.84073 0.74499 0.92649 0.92313 0.89649 0.90449 0.85618 0.85276 0.85083 0.84769 0.84637 0.90571 0.90081 0.71939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.22 12.87 -148.98 -1.92 -1.70 16 2 C -0.04 0.05 2.97 71.24 0.21 0.26 16 3 Si 0.80 -2.94 32.09 68.60 2.20 -0.74 16 4 C -0.05 -0.04 6.20 24.76 0.15 0.11 16 5 C -0.15 -0.87 10.88 23.65 0.26 -0.61 16 6 C -0.27 -0.69 6.31 -18.99 -0.12 -0.81 16 7 C 0.58 3.68 7.81 86.65 0.68 4.36 16 8 O -0.59 -10.13 16.98 -4.05 -0.07 -10.20 16 9 N -0.71 1.84 5.55 -466.42 -2.59 -0.75 16 10 C 0.13 -0.19 5.51 86.38 0.48 0.28 16 11 C -0.11 0.77 3.75 -10.27 -0.04 0.73 16 12 H 0.12 -1.36 8.14 -2.39 -0.02 -1.38 16 13 C -0.13 0.76 7.00 31.12 0.22 0.98 16 14 C -0.07 0.32 3.98 -11.01 -0.04 0.28 16 15 H 0.11 -0.76 8.10 -2.39 -0.02 -0.78 16 16 C -0.08 -0.04 5.29 -19.87 -0.11 -0.14 16 17 C -0.13 -0.25 8.62 22.27 0.19 -0.05 16 18 C -0.13 -0.35 10.05 22.27 0.22 -0.12 16 19 C -0.14 -0.32 10.05 22.27 0.22 -0.09 16 20 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 21 C -0.13 -0.10 9.71 22.27 0.22 0.12 16 22 C -0.12 0.56 7.11 31.12 0.22 0.78 16 23 C 0.07 -0.41 11.61 67.40 0.78 0.37 16 24 O -0.16 0.46 8.89 4.48 0.04 0.50 16 25 H 0.40 -3.54 8.70 -74.05 -0.64 -4.18 16 26 H 0.13 -0.10 7.96 -2.39 -0.02 -0.12 16 27 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 28 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 29 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.42 -4.59 7.44 -92.70 -0.69 -5.28 16 31 H 0.06 0.12 7.84 -2.39 -0.02 0.10 16 32 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.08 -0.71 8.14 -2.39 -0.02 -0.72 16 34 H 0.08 -0.26 6.05 -2.39 -0.01 -0.27 16 35 H 0.13 0.00 6.64 -2.91 -0.02 -0.02 16 36 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 37 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 38 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 40 H 0.08 -0.14 7.69 -2.38 -0.02 -0.16 16 41 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.27 -4.70 7.47 -2.91 -0.02 -4.72 16 Total: 0.00 -25.10 358.25 1.19 -23.91 By element: Atomic # 1 Polarization: -17.25 SS G_CDS: -0.25 Total: -17.50 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 3.77 Total: 6.47 kcal Atomic # 7 Polarization: 1.84 SS G_CDS: -2.59 Total: -0.75 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.95 Total: -11.39 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.20 Total: -0.74 kcal Total: -25.10 1.19 -23.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.288 kcal (2) G-P(sol) polarization free energy of solvation -25.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds