Wall clock time and date at job start Thu Mar 4 2021 13:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47283 * 2 1 4 4 C 1.50702 * 109.47121 * 119.99916 * 2 1 3 5 5 C 1.31113 * 118.54765 * 341.98385 * 4 2 1 6 6 N 1.38928 * 121.84968 * 179.61724 * 5 4 2 7 7 C 1.47030 * 118.88173 * 13.29225 * 6 5 4 8 8 C 1.53495 * 107.50581 * 316.25317 * 7 6 5 9 9 C 1.50204 * 118.54629 * 161.95978 * 4 2 1 10 10 C 1.50701 * 109.33102 * 320.31294 * 9 4 2 11 11 O 1.21277 * 120.00085 * 276.24276 * 10 9 4 12 12 N 1.34778 * 119.99917 * 96.51477 * 10 9 4 13 13 C 1.46497 * 119.99983 * 179.72413 * 12 10 9 14 14 C 1.52999 * 109.47416 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84775 * 314.67333 * 14 13 12 16 16 C 1.53778 * 113.61381 * 85.86125 * 14 13 12 17 17 C 1.53955 * 87.01976 * 139.95546 * 16 14 13 18 18 H 1.08998 * 113.61148 * 89.20279 * 17 16 14 19 19 C 1.50698 * 113.66790 * 220.06848 * 17 16 14 20 20 C 1.38241 * 120.00005 * 37.28812 * 19 17 16 21 21 C 1.38234 * 119.99949 * 179.76680 * 20 19 17 22 22 C 1.38232 * 120.00163 * 0.48034 * 21 20 19 23 23 C 1.38240 * 119.99736 * 359.79786 * 22 21 20 24 24 C 1.38232 * 120.00045 * 217.55707 * 19 17 16 25 25 C 1.53773 * 113.61934 * 183.47162 * 14 13 12 26 26 H 0.96696 * 114.00174 * 181.92582 * 1 2 3 27 27 H 1.09004 * 109.47182 * 239.99709 * 2 1 3 28 28 H 1.48495 * 110.00084 * 180.02562 * 3 2 1 29 29 H 1.48503 * 109.99599 * 301.31912 * 3 2 1 30 30 H 1.07999 * 119.07341 * 359.59165 * 5 4 2 31 31 H 0.97002 * 120.55895 * 193.27244 * 6 5 4 32 32 H 1.08998 * 109.82089 * 75.87514 * 7 6 5 33 33 H 1.09002 * 109.82250 * 196.73571 * 7 6 5 34 34 H 1.08996 * 109.74931 * 301.40178 * 8 7 6 35 35 H 1.09000 * 109.46943 * 180.86190 * 8 7 6 36 36 H 1.09006 * 109.32917 * 79.96577 * 9 4 2 37 37 H 0.97003 * 119.99759 * 359.73187 * 12 10 9 38 38 H 1.08999 * 109.47107 * 300.00542 * 13 12 10 39 39 H 1.09001 * 109.47218 * 60.00011 * 13 12 10 40 40 H 1.09001 * 113.61564 * 254.53579 * 16 14 13 41 41 H 1.08999 * 113.61672 * 25.43497 * 16 14 13 42 42 H 1.08000 * 120.00024 * 359.97438 * 20 19 17 43 43 H 1.08003 * 119.99927 * 180.25126 * 21 20 19 44 44 H 1.08002 * 120.00226 * 179.76656 * 22 21 20 45 45 H 1.08005 * 119.99828 * 179.97438 * 23 22 21 46 46 H 1.07998 * 120.00023 * 0.02562 * 24 19 17 47 47 H 1.09002 * 113.61167 * 334.57127 * 25 14 13 48 48 H 1.09000 * 113.61491 * 105.38471 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.1076 -0.8798 2.2364 6 7 1.4958 -1.5318 3.4001 7 6 2.9263 -1.7816 3.6307 8 6 3.5260 -2.2838 2.3101 9 6 3.3534 -1.1935 1.2501 10 6 3.7089 -1.7529 -0.1034 11 8 3.4219 -2.8981 -0.3807 12 7 4.3508 -0.9821 -1.0036 13 6 4.7018 -1.5278 -2.3171 14 6 5.4182 -0.4553 -3.1401 15 1 4.9259 0.5159 -3.0898 16 6 6.9332 -0.3918 -2.8837 17 6 7.0991 -0.1723 -4.3985 18 1 7.0680 0.8766 -4.6936 19 6 8.2694 -0.9128 -4.9925 20 6 8.5910 -2.1774 -4.5360 21 6 9.6615 -2.8587 -5.0843 22 6 10.4167 -2.2714 -6.0821 23 6 10.0986 -1.0045 -6.5346 24 6 9.0248 -0.3253 -5.9900 25 6 5.7563 -0.9012 -4.5724 26 1 -0.3933 -0.8829 0.0297 27 1 1.7923 -0.5139 -0.8900 28 1 3.5349 1.7701 -0.0006 29 1 1.5354 2.4770 -1.1922 30 1 0.0990 -0.5016 2.1582 31 1 0.8344 -1.8171 4.0497 32 1 3.4183 -0.8580 3.9355 33 1 3.0491 -2.5387 4.4052 34 1 3.0092 -3.1891 1.9916 35 1 4.5864 -2.4943 2.4494 36 1 4.0150 -0.3584 1.4805 37 1 4.5804 -0.0662 -0.7818 38 1 5.3598 -2.3873 -2.1894 39 1 3.7948 -1.8386 -2.8356 40 1 7.2387 0.4638 -2.2815 41 1 7.3559 -1.3322 -2.5300 42 1 8.0037 -2.6345 -3.7533 43 1 9.9103 -3.8483 -4.7304 44 1 11.2554 -2.8021 -6.5078 45 1 10.6889 -0.5455 -7.3140 46 1 8.7765 0.6645 -6.3434 47 1 5.8566 -1.9812 -4.6812 48 1 5.1120 -0.4574 -5.3314 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_15608500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:26:48 Heat of formation + Delta-G solvation = -2.897044 kcal Electronic energy + Delta-G solvation = -28030.464460 eV Core-core repulsion = 24245.192974 eV Total energy + Delta-G solvation = -3785.271486 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63674 -41.03829 -39.46246 -38.85851 -37.51296 -35.69334 -33.66731 -32.30548 -32.21494 -31.79790 -29.09419 -27.01292 -26.71322 -26.02631 -24.52570 -23.57946 -23.08046 -21.98990 -21.70427 -20.17820 -19.28897 -18.83388 -18.16098 -17.98420 -17.77755 -17.08777 -16.63807 -16.40715 -16.07653 -15.84543 -15.64136 -15.31507 -15.06886 -15.03420 -14.75325 -14.43364 -14.34766 -14.21409 -14.06920 -13.86621 -13.84813 -13.45651 -13.17241 -13.12311 -12.74115 -12.48357 -12.40493 -12.28839 -12.12153 -12.07449 -11.60180 -11.55910 -11.43321 -11.32533 -11.15884 -10.95760 -10.73307 -10.21287 -9.86051 -9.58737 -8.25362 -4.83560 0.39757 0.45909 1.26506 1.49102 1.57913 1.65431 2.06757 2.23843 2.73762 2.80361 3.44538 3.50440 3.52956 3.61351 3.72875 3.88312 3.93522 3.98883 4.04822 4.06083 4.13217 4.17193 4.20118 4.26142 4.28471 4.39586 4.42695 4.46801 4.55019 4.59275 4.62088 4.67222 4.74872 4.77462 4.80561 4.84191 4.86958 4.99719 5.06204 5.10415 5.15921 5.21945 5.32640 5.33910 5.42455 5.51992 5.55375 5.60381 5.72778 6.08979 6.39406 6.45764 6.66160 7.03391 7.13814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.057 4.057 3 Si 0.795 3.205 4 C -0.312 4.312 5 C 0.172 3.828 6 N -0.749 5.749 7 C 0.122 3.878 8 C -0.123 4.123 9 C -0.041 4.041 10 C 0.521 3.479 11 O -0.582 6.582 12 N -0.725 5.725 13 C 0.130 3.870 14 C -0.117 4.117 15 H 0.106 0.894 16 C -0.124 4.124 17 C -0.071 4.071 18 H 0.108 0.892 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.118 4.118 26 H 0.374 0.626 27 H 0.041 0.959 28 H -0.246 1.246 29 H -0.304 1.304 30 H 0.157 0.843 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.408 0.592 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 3.641 4.461 5.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.166 4.166 3 Si 0.696 3.304 4 C -0.323 4.323 5 C 0.049 3.951 6 N -0.378 5.378 7 C -0.002 4.002 8 C -0.162 4.162 9 C -0.062 4.062 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.377 5.377 13 C 0.007 3.993 14 C -0.135 4.135 15 H 0.124 0.876 16 C -0.161 4.161 17 C -0.089 4.089 18 H 0.126 0.874 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.156 4.156 26 H 0.223 0.777 27 H 0.058 0.942 28 H -0.170 1.170 29 H -0.232 1.232 30 H 0.174 0.826 31 H 0.248 0.752 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.245 0.755 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.151 0.849 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.703 4.031 3.846 5.826 hybrid contribution -0.119 -1.643 -0.810 1.835 sum 1.584 2.388 3.037 4.175 Atomic orbital electron populations 1.86652 1.17887 1.34364 1.97027 1.25201 0.83867 1.12500 0.95049 0.92168 0.77816 0.75083 0.85310 1.20195 0.96482 1.16846 0.98760 1.20546 0.98747 0.90598 0.85256 1.44697 1.07587 1.63807 1.21746 1.21657 0.81393 1.01378 0.95797 1.21742 1.02094 0.97125 0.95216 1.19740 0.96360 0.99095 0.91029 1.21072 0.75728 0.85252 0.87060 1.90673 1.55092 1.20097 1.80272 1.46240 1.59355 1.16695 1.15454 1.21339 0.98996 0.96529 0.82476 1.22740 0.95941 0.99013 0.95827 0.87572 1.23190 0.94508 1.03019 0.95383 1.21533 0.91736 0.99610 0.95992 0.87389 1.19909 0.96742 0.94739 0.96519 1.21187 0.97939 0.94955 1.00548 1.21423 0.95809 1.00591 0.97089 1.21447 1.00444 0.95991 0.97668 1.21455 0.97669 0.95272 1.00314 1.21337 0.95722 1.00716 0.96954 1.22980 0.95947 1.00873 0.95800 0.77740 0.94196 1.17046 1.23225 0.82579 0.75242 0.90673 0.88503 0.92634 0.89966 0.87866 0.75523 0.92062 0.92758 0.90152 0.89810 0.85585 0.85021 0.84855 0.84678 0.84858 0.90062 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.20 11.27 -148.98 -1.68 -2.88 16 2 C -0.06 -0.13 2.49 71.24 0.18 0.05 16 3 Si 0.79 -0.29 32.72 68.60 2.24 1.95 16 4 C -0.31 -0.23 4.08 -16.76 -0.07 -0.30 16 5 C 0.17 -0.35 10.10 83.42 0.84 0.49 16 6 N -0.75 3.27 5.83 -345.97 -2.02 1.25 16 7 C 0.12 -0.59 7.16 86.44 0.62 0.03 16 8 C -0.12 -0.07 5.30 30.77 0.16 0.10 16 9 C -0.04 -0.05 2.32 -12.43 -0.03 -0.08 16 10 C 0.52 3.45 5.23 87.66 0.46 3.91 16 11 O -0.58 -9.09 16.11 -3.02 -0.05 -9.14 16 12 N -0.72 -1.42 5.35 -463.07 -2.48 -3.90 16 13 C 0.13 0.27 5.50 86.38 0.47 0.74 16 14 C -0.12 0.28 3.75 -10.27 -0.04 0.25 16 15 H 0.11 -0.43 8.14 -2.39 -0.02 -0.44 16 16 C -0.12 0.32 7.02 31.18 0.22 0.54 16 17 C -0.07 0.11 3.98 -10.96 -0.04 0.07 16 18 H 0.11 -0.36 8.09 -2.39 -0.02 -0.38 16 19 C -0.08 -0.17 5.29 -19.87 -0.11 -0.27 16 20 C -0.13 -0.36 8.63 22.27 0.19 -0.17 16 21 C -0.13 -0.39 10.05 22.27 0.22 -0.16 16 22 C -0.14 -0.36 10.05 22.27 0.22 -0.14 16 23 C -0.13 -0.30 10.05 22.27 0.22 -0.07 16 24 C -0.13 -0.28 9.71 22.27 0.22 -0.06 16 25 C -0.12 0.18 7.11 31.12 0.22 0.40 16 26 H 0.37 -0.78 8.73 -74.06 -0.65 -1.43 16 27 H 0.04 0.25 6.45 -2.39 -0.02 0.23 16 28 H -0.25 0.50 6.60 99.48 0.66 1.15 16 29 H -0.30 -2.21 7.11 99.48 0.71 -1.50 16 30 H 0.16 -0.73 6.77 -2.91 -0.02 -0.75 16 31 H 0.41 -3.27 8.96 -92.71 -0.83 -4.10 16 32 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.05 0.38 7.51 -2.39 -0.02 0.36 16 35 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.10 -0.30 8.00 -2.38 -0.02 -0.32 16 37 H 0.41 -0.86 7.58 -92.71 -0.70 -1.56 16 38 H 0.06 0.25 7.87 -2.39 -0.02 0.23 16 39 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.08 -0.10 6.08 -2.39 -0.01 -0.12 16 42 H 0.13 0.10 6.65 -2.91 -0.02 0.08 16 43 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 44 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 45 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 46 H 0.13 -0.17 8.05 -2.91 -0.02 -0.19 16 47 H 0.08 0.01 7.69 -2.39 -0.02 -0.01 16 48 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: 0.00 -16.96 382.41 -1.21 -18.18 By element: Atomic # 1 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 3.97 Total: 5.30 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -4.49 Total: -2.65 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.73 Total: -12.02 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.24 Total: 1.95 kcal Total: -16.96 -1.21 -18.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_15608500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.279 kcal (2) G-P(sol) polarization free energy of solvation -16.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds