Wall clock time and date at job start Thu Mar 4 2021 13:26:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42903 * 1
3 3 Si 1.86303 * 109.46849 * 2 1
4 4 C 1.50696 * 109.46812 * 240.00358 * 2 1 3
5 5 C 1.38709 * 120.02762 * 284.99740 * 4 2 1
6 6 O 1.35901 * 120.05787 * 359.95504 * 5 4 2
7 7 C 1.42895 * 117.00002 * 180.02562 * 6 5 4
8 8 C 1.50706 * 109.46727 * 180.02562 * 7 6 5
9 9 O 1.21276 * 120.00189 * 0.02562 * 8 7 6
10 10 N 1.34775 * 119.99531 * 180.02562 * 8 7 6
11 11 C 1.46503 * 119.99923 * 180.02562 * 10 8 7
12 12 C 1.52992 * 109.47581 * 179.97438 * 11 10 8
13 13 H 1.09000 * 112.84950 * 314.67000 * 12 11 10
14 14 C 1.53791 * 113.61303 * 85.86080 * 12 11 10
15 15 C 1.53953 * 87.01632 * 139.95533 * 14 12 11
16 16 H 1.09002 * 113.54035 * 89.19559 * 15 14 12
17 17 C 1.50702 * 113.74101 * 220.05490 * 15 14 12
18 18 C 1.38236 * 119.99765 * 37.32685 * 17 15 14
19 19 C 1.38244 * 119.99847 * 179.74616 * 18 17 15
20 20 C 1.38233 * 119.99962 * 0.52542 * 19 18 17
21 21 C 1.38238 * 119.99806 * 359.74945 * 20 19 18
22 22 C 1.38233 * 120.00198 * 217.59843 * 17 15 14
23 23 C 1.53777 * 87.11355 * 334.63582 * 15 14 12
24 24 C 1.38759 * 119.88974 * 179.97438 * 5 4 2
25 25 C 1.38120 * 119.94381 * 0.02562 * 24 5 4
26 26 C 1.38295 * 120.05704 * 0.02562 * 25 24 5
27 27 C 1.38171 * 120.03158 * 104.99866 * 4 2 1
28 28 H 0.96698 * 114.00104 * 60.00004 * 1 2 3
29 29 H 1.08994 * 109.47137 * 119.99952 * 2 1 3
30 30 H 1.48496 * 110.00123 * 298.68176 * 3 2 1
31 31 H 1.48505 * 110.00066 * 60.00513 * 3 2 1
32 32 H 1.09001 * 109.47839 * 300.00450 * 7 6 5
33 33 H 1.09003 * 109.46943 * 60.01051 * 7 6 5
34 34 H 0.97000 * 120.00804 * 0.02562 * 10 8 7
35 35 H 1.09001 * 109.46689 * 300.00249 * 11 10 8
36 36 H 1.08999 * 109.47382 * 59.99604 * 11 10 8
37 37 H 1.08999 * 113.61501 * 254.53169 * 14 12 11
38 38 H 1.08991 * 113.61171 * 25.43440 * 14 12 11
39 39 H 1.08001 * 120.00473 * 359.97438 * 18 17 15
40 40 H 1.08002 * 119.99623 * 180.29599 * 19 18 17
41 41 H 1.08004 * 120.00229 * 179.77030 * 20 19 18
42 42 H 1.08001 * 119.99826 * 179.97438 * 21 20 19
43 43 H 1.08000 * 120.00104 * 0.02562 * 22 17 15
44 44 H 1.08998 * 113.61651 * 270.81046 * 23 15 14
45 45 H 1.09007 * 113.68953 * 139.92280 * 23 15 14
46 46 H 1.08001 * 120.02961 * 179.97438 * 24 5 4
47 47 H 1.07997 * 119.97310 * 179.97438 * 25 24 5
48 48 H 1.07995 * 119.94657 * 179.70622 * 26 25 24
49 49 H 1.08005 * 119.97011 * 0.04236 * 27 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7565 0.0000
4 6 1.9313 -0.7103 -1.2305
5 6 1.8696 -2.0939 -1.3070
6 8 1.3572 -2.8107 -0.2724
7 6 1.3255 -4.2316 -0.4204
8 6 0.7285 -4.8523 0.8164
9 8 0.3655 -4.1471 1.7340
10 7 0.5981 -6.1909 0.9028
11 6 0.0173 -6.7942 2.1048
12 6 -0.0166 -8.3156 1.9466
13 1 -0.3850 -8.6315 0.9706
14 6 1.2916 -9.0077 2.3647
15 6 0.4152 -10.1059 2.9940
16 1 0.1659 -10.9124 2.3044
17 6 0.9290 -10.6071 4.3191
18 6 1.5097 -9.7269 5.2129
19 6 1.9763 -10.1858 6.4307
20 6 1.8719 -11.5266 6.7501
21 6 1.2962 -12.4078 5.8539
22 6 0.8245 -11.9480 4.6385
23 6 -0.6882 -9.0426 3.1235
24 6 2.3324 -2.7450 -2.4416
25 6 2.8536 -2.0143 -3.4915
26 6 2.9150 -0.6350 -3.4123
27 6 2.4536 0.0160 -2.2835
28 1 -0.3933 0.4417 -0.7650
29 1 1.7924 -0.5138 0.8899
30 1 1.5878 2.4586 -1.2242
31 1 1.5615 2.4679 1.2086
32 1 0.7185 -4.4934 -1.2870
33 1 2.3399 -4.6050 -0.5611
34 1 0.8888 -6.7550 0.1691
35 1 0.6234 -6.5322 2.9720
36 1 -0.9973 -6.4212 2.2447
37 1 1.8905 -9.3547 1.5227
38 1 1.8717 -8.4412 3.0931
39 1 1.5957 -8.6801 4.9614
40 1 2.4257 -9.4972 7.1309
41 1 2.2397 -11.8858 7.6999
42 1 1.2150 -13.4555 6.1032
43 1 0.3751 -12.6365 3.9383
44 1 -0.6503 -8.4858 4.0597
45 1 -1.6859 -9.4166 2.8935
46 1 2.2858 -3.8223 -2.5035
47 1 3.2143 -2.5206 -4.3746
48 1 3.3272 -0.0658 -4.2323
49 1 2.5025 1.0933 -2.2241
There are 65 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 65
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
m_22_12130084_2989392.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Thu Mar 4 2021 13:26:55
Heat of formation + Delta-G solvation = -19.339574 kcal
Electronic energy + Delta-G solvation = -29657.446379 eV
Core-core repulsion = 25517.290949 eV
Total energy + Delta-G solvation = -4140.155430 eV
No. of doubly occupied orbitals = 65
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 354.166 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.64664 -41.19520 -40.46586 -39.00256 -38.47623 -37.61190 -35.71203 -32.79436
-32.36359 -31.78524 -31.30988 -30.10238 -27.97175 -26.69272 -26.62684 -24.74775
-23.57269 -23.43106 -22.61927 -21.94279 -21.57329 -20.10357 -19.51347 -18.54169
-18.11062 -17.71030 -17.52735 -17.13164 -16.91285 -16.69847 -16.31761 -16.14219
-15.96393 -15.82474 -15.58848 -15.31384 -15.03061 -14.91825 -14.68555 -14.42005
-14.21688 -14.18809 -13.98126 -13.72731 -13.44749 -13.39193 -13.07617 -13.04584
-12.69934 -12.53012 -12.34459 -12.11918 -12.04094 -11.88555 -11.68891 -11.49458
-11.39987 -11.27228 -10.92943 -10.53959 -10.22403 -9.96912 -9.83464 -9.55352
-9.20920 -4.96160 0.24351 0.42746 0.42874 0.48446 1.28207 1.42087
1.49687 1.53603 1.92815 2.60122 2.70908 2.83421 3.44830 3.46803
3.56317 3.57671 3.69673 3.74888 3.90050 3.97269 3.98884 4.03486
4.05628 4.10557 4.13849 4.17189 4.25726 4.29396 4.32992 4.38044
4.45744 4.54360 4.60293 4.62345 4.67835 4.71457 4.82090 4.87806
4.92834 4.98878 5.07014 5.10683 5.14130 5.19935 5.29392 5.31957
5.38590 5.48498 5.54079 5.58242 5.63065 5.76778 5.77230 6.11843
6.28060 6.46089 6.52394 7.10695
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.549 6.549
2 C -0.084 4.084
3 Si 0.783 3.217
4 C -0.165 4.165
5 C 0.128 3.872
6 O -0.314 6.314
7 C 0.038 3.962
8 C 0.509 3.491
9 O -0.575 6.575
10 N -0.706 5.706
11 C 0.132 3.868
12 C -0.108 4.108
13 H 0.120 0.880
14 C -0.125 4.125
15 C -0.072 4.072
16 H 0.111 0.889
17 C -0.079 4.079
18 C -0.129 4.129
19 C -0.133 4.133
20 C -0.139 4.139
21 C -0.130 4.130
22 C -0.129 4.129
23 C -0.122 4.122
24 C -0.212 4.212
25 C -0.074 4.074
26 C -0.154 4.154
27 C -0.088 4.088
28 H 0.381 0.619
29 H 0.095 0.905
30 H -0.264 1.264
31 H -0.308 1.308
32 H 0.120 0.880
33 H 0.125 0.875
34 H 0.421 0.579
35 H 0.056 0.944
36 H 0.056 0.944
37 H 0.085 0.915
38 H 0.079 0.921
39 H 0.126 0.874
40 H 0.130 0.870
41 H 0.132 0.868
42 H 0.135 0.865
43 H 0.135 0.865
44 H 0.076 0.924
45 H 0.079 0.921
46 H 0.155 0.845
47 H 0.154 0.846
48 H 0.150 0.850
49 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.435 -5.299 -7.382 10.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.357 6.357
2 C -0.191 4.191
3 Si 0.687 3.313
4 C -0.166 4.166
5 C 0.083 3.917
6 O -0.227 6.227
7 C -0.040 4.040
8 C 0.295 3.705
9 O -0.453 6.453
10 N -0.361 5.361
11 C 0.008 3.992
12 C -0.126 4.126
13 H 0.138 0.862
14 C -0.162 4.162
15 C -0.090 4.090
16 H 0.129 0.871
17 C -0.079 4.079
18 C -0.147 4.147
19 C -0.150 4.150
20 C -0.157 4.157
21 C -0.148 4.148
22 C -0.147 4.147
23 C -0.160 4.160
24 C -0.230 4.230
25 C -0.092 4.092
26 C -0.172 4.172
27 C -0.106 4.106
28 H 0.230 0.770
29 H 0.113 0.887
30 H -0.190 1.190
31 H -0.237 1.237
32 H 0.138 0.862
33 H 0.143 0.857
34 H 0.259 0.741
35 H 0.075 0.925
36 H 0.074 0.926
37 H 0.104 0.896
38 H 0.097 0.903
39 H 0.144 0.856
40 H 0.148 0.852
41 H 0.150 0.850
42 H 0.152 0.848
43 H 0.153 0.847
44 H 0.095 0.905
45 H 0.098 0.902
46 H 0.173 0.827
47 H 0.172 0.828
48 H 0.168 0.832
49 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 3.973 -4.244 -5.990 8.347
hybrid contribution -1.152 -0.610 -0.231 1.324
sum 2.821 -4.854 -6.221 8.380
Atomic orbital electron populations
1.86652 1.19009 1.80362 1.49672 1.25222 0.83243 1.12467 0.98170
0.94047 0.89842 0.70844 0.76585 1.19708 1.06804 0.91467 0.98598
1.19083 0.94136 0.91111 0.87369 1.86190 1.78048 1.18712 1.39716
1.22703 1.04518 0.79903 0.96915 1.20588 0.78493 0.83069 0.88342
1.90778 1.50340 1.62656 1.41544 1.45661 1.63609 1.05418 1.21376
1.21364 0.97984 0.92881 0.86946 1.22723 0.98065 0.91114 1.00746
0.86210 1.23198 0.95860 0.96231 1.00911 1.21563 0.96977 0.97154
0.93317 0.87108 1.19948 0.98072 0.93509 0.96322 1.21198 0.99252
1.00070 0.94184 1.21421 1.00060 0.96308 0.97258 1.21433 1.00052
0.93822 1.00377 1.21454 0.98408 1.00578 0.94347 1.21348 1.00355
0.95559 0.97439 1.23000 0.98447 0.96360 0.98182 1.21597 1.05576
1.01842 0.93984 1.21404 0.95418 0.94181 0.98202 1.21406 1.02005
0.95125 0.98678 1.21189 0.96480 1.00494 0.92422 0.77023 0.88659
1.19008 1.23682 0.86209 0.85718 0.74086 0.92540 0.92597 0.89630
0.90292 0.85603 0.85211 0.85028 0.84757 0.84709 0.90543 0.90209
0.82745 0.82813 0.83187 0.83666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.55 -6.19 12.88 -148.98 -1.92 -8.11 16
2 C -0.08 -0.61 2.38 71.23 0.17 -0.44 16
3 Si 0.78 1.50 30.25 68.60 2.07 3.57 16
4 C -0.16 -0.79 5.27 -19.77 -0.10 -0.89 16
5 C 0.13 0.63 6.66 22.51 0.15 0.78 16
6 O -0.31 -2.71 9.00 -73.40 -0.66 -3.37 16
7 C 0.04 -0.04 5.22 71.24 0.37 0.34 16
8 C 0.51 2.54 7.91 87.66 0.69 3.23 16
9 O -0.57 -10.15 16.50 16.02 0.26 -9.89 16
10 N -0.71 2.18 5.56 -463.07 -2.57 -0.40 16
11 C 0.13 -0.14 5.50 86.38 0.47 0.33 16
12 C -0.11 0.70 3.75 -10.27 -0.04 0.66 16
13 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16
14 C -0.12 0.71 7.02 31.18 0.22 0.93 16
15 C -0.07 0.28 3.97 -10.96 -0.04 0.24 16
16 H 0.11 -0.68 8.09 -2.39 -0.02 -0.69 16
17 C -0.08 -0.06 5.29 -19.87 -0.11 -0.17 16
18 C -0.13 -0.27 8.63 22.27 0.19 -0.08 16
19 C -0.13 -0.36 10.05 22.27 0.22 -0.13 16
20 C -0.14 -0.33 10.05 22.27 0.22 -0.11 16
21 C -0.13 -0.22 10.05 22.27 0.22 0.00 16
22 C -0.13 -0.14 9.71 22.27 0.22 0.08 16
23 C -0.12 0.47 7.11 31.12 0.22 0.69 16
24 C -0.21 0.33 9.04 22.37 0.20 0.54 16
25 C -0.07 0.27 10.04 22.26 0.22 0.49 16
26 C -0.15 0.41 10.04 22.28 0.22 0.64 16
27 C -0.09 -0.01 8.66 22.25 0.19 0.19 16
28 H 0.38 1.40 8.70 -74.06 -0.64 0.76 16
29 H 0.10 1.02 7.83 -2.39 -0.02 1.00 16
30 H -0.26 -0.63 6.68 99.48 0.66 0.03 16
31 H -0.31 -3.15 7.11 99.48 0.71 -2.45 16
32 H 0.12 -0.83 7.66 -2.39 -0.02 -0.85 16
33 H 0.13 -0.97 7.66 -2.39 -0.02 -0.99 16
34 H 0.42 -4.67 8.47 -92.71 -0.79 -5.45 16
35 H 0.06 0.13 7.88 -2.39 -0.02 0.12 16
36 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16
37 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16
38 H 0.08 -0.26 6.10 -2.39 -0.01 -0.28 16
39 H 0.13 0.02 6.66 -2.91 -0.02 0.00 16
40 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16
41 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16
42 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16
43 H 0.14 -0.36 8.05 -2.91 -0.02 -0.38 16
44 H 0.08 -0.09 7.69 -2.39 -0.02 -0.11 16
45 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16
46 H 0.16 -1.21 6.30 -2.91 -0.02 -1.23 16
47 H 0.15 -1.38 8.06 -2.91 -0.02 -1.40 16
48 H 0.15 -1.10 8.06 -2.91 -0.02 -1.13 16
49 H 0.15 -0.45 4.86 -2.91 -0.01 -0.46 16
Total: 0.00 -27.66 403.12 0.66 -27.00
By element:
Atomic # 1 Polarization: -15.67 SS G_CDS: -0.45 Total: -16.12 kcal
Atomic # 6 Polarization: 3.38 SS G_CDS: 3.93 Total: 7.31 kcal
Atomic # 7 Polarization: 2.18 SS G_CDS: -2.57 Total: -0.40 kcal
Atomic # 8 Polarization: -19.05 SS G_CDS: -2.32 Total: -21.37 kcal
Atomic # 14 Polarization: 1.50 SS G_CDS: 2.07 Total: 3.57 kcal
Total: -27.66 0.66 -27.00 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
m_22_12130084_2989392.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.659 kcal
(2) G-P(sol) polarization free energy of solvation -27.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds