Wall clock time and date at job start Thu Mar 4 2021 13:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33819 * 122.44897 * 2 1 4 4 C 1.50692 * 124.52037 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47409 * 235.23102 * 4 3 2 6 6 Si 1.86305 * 109.47106 * 115.23418 * 4 3 2 7 7 S 1.70616 * 110.95273 * 180.02562 * 3 2 1 8 8 C 1.75829 * 91.56557 * 359.97438 * 7 3 2 9 9 C 1.46582 * 125.45883 * 180.02562 * 8 7 3 10 10 O 1.21703 * 119.99657 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99867 * 359.96172 * 9 8 7 12 12 C 1.46504 * 119.99796 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46937 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.84770 * 316.18965 * 13 12 11 15 15 C 1.53774 * 113.61449 * 87.50063 * 13 12 11 16 16 C 1.53785 * 87.08056 * 139.98089 * 15 13 12 17 17 H 1.08996 * 113.68998 * 89.13160 * 16 15 13 18 18 C 1.50702 * 113.61472 * 220.01760 * 16 15 13 19 19 C 1.38244 * 119.99626 * 37.22354 * 18 16 15 20 20 C 1.38235 * 119.99451 * 179.78551 * 19 18 16 21 21 C 1.38237 * 120.00342 * 0.46801 * 20 19 18 22 22 C 1.38235 * 119.99985 * 359.76259 * 21 20 19 23 23 C 1.38230 * 120.00373 * 217.49755 * 18 16 15 24 24 C 1.53777 * 87.07886 * 334.56775 * 16 15 13 25 25 C 1.36651 * 109.08453 * 0.02562 * 8 7 3 26 26 H 1.08995 * 109.47725 * 275.48189 * 1 2 3 27 27 H 1.08999 * 109.46965 * 35.48472 * 1 2 3 28 28 H 1.09010 * 109.47215 * 155.48197 * 1 2 3 29 29 H 1.08998 * 109.47679 * 355.23385 * 4 3 2 30 30 H 0.96696 * 113.99870 * 300.00482 * 5 4 3 31 31 H 1.48495 * 110.00079 * 180.02562 * 6 4 3 32 32 H 1.48503 * 109.99776 * 301.31722 * 6 4 3 33 33 H 0.96997 * 119.99954 * 359.97438 * 11 9 8 34 34 H 1.08997 * 109.46745 * 300.00022 * 12 11 9 35 35 H 1.08997 * 109.47178 * 59.99663 * 12 11 9 36 36 H 1.08997 * 113.61985 * 254.52996 * 15 13 12 37 37 H 1.09002 * 113.62004 * 25.43344 * 15 13 12 38 38 H 1.07998 * 120.00310 * 0.02562 * 19 18 16 39 39 H 1.08004 * 120.00192 * 180.25395 * 20 19 18 40 40 H 1.08002 * 120.00220 * 179.79021 * 21 20 19 41 41 H 1.07997 * 120.00457 * 180.02562 * 22 21 20 42 42 H 1.08009 * 119.99785 * 359.97438 * 23 18 16 43 43 H 1.09006 * 113.61709 * 270.88256 * 24 16 15 44 44 H 1.09002 * 113.69319 * 139.99642 * 24 16 15 45 45 H 1.07998 * 123.35383 * 179.73547 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 -0.0006 5 8 2.1566 3.2548 -1.1073 6 14 2.0811 3.3809 1.5883 7 16 3.8969 0.7892 -0.0007 8 6 3.5937 -0.9427 -0.0002 9 6 4.6231 -1.9862 0.0000 10 8 4.3001 -3.1596 0.0008 11 7 5.9273 -1.6462 -0.0009 12 6 6.9562 -2.6892 -0.0012 13 6 8.3412 -2.0392 -0.0029 14 1 8.4158 -1.2037 -0.6988 15 6 8.8741 -1.7210 1.4041 16 6 10.2501 -2.1915 0.9037 17 1 10.8484 -1.3976 0.4567 18 6 11.0164 -3.0016 1.9174 19 6 10.3479 -3.8854 2.7440 20 6 11.0515 -4.6317 3.6707 21 6 12.4221 -4.4872 3.7777 22 6 13.0899 -3.6000 2.9544 23 6 12.3869 -2.8568 2.0246 24 6 9.4951 -3.0483 -0.1261 25 6 2.2446 -1.1601 -0.0001 26 1 -0.3634 0.0982 1.0229 27 1 -0.3633 0.8368 -0.5965 28 1 -0.3634 -0.9351 -0.4265 29 1 0.5509 2.4499 -0.0863 30 1 3.1184 3.3536 -1.0962 31 1 1.5050 4.7495 1.6004 32 1 1.5722 2.6059 2.7484 33 1 6.1847 -0.7110 -0.0021 34 1 6.8460 -3.3084 0.8891 35 1 6.8450 -3.3090 -0.8908 36 1 8.8397 -0.6608 1.6546 37 1 8.4530 -2.3551 2.1843 38 1 9.2766 -3.9956 2.6630 39 1 10.5298 -5.3252 4.3137 40 1 12.9713 -5.0678 4.5041 41 1 14.1607 -3.4873 3.0376 42 1 12.9086 -2.1633 1.3816 43 1 9.2437 -4.0454 0.2356 44 1 9.9610 -3.0607 -1.1115 45 1 1.8019 -2.1452 -0.0040 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12130084_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:28:29 Heat of formation + Delta-G solvation = 11.136689 kcal Electronic energy + Delta-G solvation = -26122.282669 eV Core-core repulsion = 22391.283227 eV Total energy + Delta-G solvation = -3730.999442 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.123 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.33100 -40.72277 -39.71633 -38.88552 -37.63209 -35.72190 -32.76337 -32.09600 -31.73898 -29.85815 -29.17659 -26.64703 -26.47292 -24.82133 -23.95673 -23.51489 -21.99833 -21.72487 -20.25504 -20.10609 -19.35148 -18.00797 -17.85536 -17.42591 -16.94577 -16.73837 -16.38695 -16.02913 -15.86019 -15.70177 -15.57007 -15.17719 -14.97037 -14.68749 -14.43201 -14.32582 -14.23013 -14.17823 -13.93519 -13.47796 -13.35079 -13.21689 -13.08420 -13.00755 -12.65419 -12.49932 -12.31530 -12.25687 -12.01628 -11.96763 -11.50648 -11.45006 -11.26046 -11.05377 -10.86081 -10.28320 -9.80530 -9.65178 -9.52226 -9.42297 -5.15858 -0.70530 0.29985 0.45720 0.51418 0.68875 1.03129 1.27350 1.60738 1.88561 1.98982 2.04604 2.86265 3.33764 3.50449 3.53927 3.61431 3.64438 3.78304 4.01593 4.04110 4.07793 4.13376 4.15134 4.19951 4.28611 4.32265 4.38390 4.40972 4.49472 4.63260 4.64866 4.67685 4.72075 4.79756 4.86139 4.91732 4.93188 4.96552 5.09727 5.13738 5.17213 5.21756 5.22502 5.32448 5.32987 5.51641 5.61191 5.65903 5.80357 6.14783 6.33306 6.55965 7.00719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.119 4.119 3 C -0.240 4.240 4 C -0.040 4.040 5 O -0.546 6.546 6 Si 0.766 3.234 7 S 0.286 5.714 8 C -0.287 4.287 9 C 0.588 3.412 10 O -0.575 6.575 11 N -0.709 5.709 12 C 0.130 3.870 13 C -0.112 4.112 14 H 0.119 0.881 15 C -0.127 4.127 16 C -0.071 4.071 17 H 0.111 0.889 18 C -0.078 4.078 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.059 4.059 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.393 0.607 31 H -0.277 1.277 32 H -0.285 1.285 33 H 0.412 0.588 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 5.198 0.261 6.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.360 4.360 4 C -0.151 4.151 5 O -0.353 6.353 6 Si 0.669 3.331 7 S 0.556 5.444 8 C -0.408 4.408 9 C 0.375 3.625 10 O -0.456 6.456 11 N -0.361 5.361 12 C 0.007 3.993 13 C -0.130 4.130 14 H 0.137 0.863 15 C -0.164 4.164 16 C -0.089 4.089 17 H 0.129 0.871 18 C -0.078 4.078 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.158 4.158 25 C -0.093 4.093 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.243 0.757 31 H -0.203 1.203 32 H -0.212 1.212 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.857 5.687 0.818 7.523 hybrid contribution -1.844 -1.397 -0.143 2.318 sum 3.013 4.289 0.675 5.285 Atomic orbital electron populations 1.20650 0.88639 1.03818 1.03046 1.18768 0.98825 0.90900 1.04672 1.24777 1.00457 1.00774 1.09974 1.24830 1.01314 0.87778 1.01204 1.86561 1.28341 1.74274 1.46162 0.94140 0.90020 0.76782 0.72196 1.82144 1.00555 0.95082 1.66649 1.24532 0.97652 0.98714 1.19856 1.17175 0.82604 0.87004 0.75759 1.90833 1.82448 1.20170 1.52152 1.45751 1.04482 1.11351 1.74512 1.21459 0.85993 0.89911 1.01918 1.22753 0.91226 0.99979 0.99054 0.86307 1.23197 0.94500 1.02662 0.96042 1.21530 0.94956 0.97745 0.94705 0.87053 1.19957 0.93889 0.97046 0.96907 1.21205 1.00366 0.96828 0.96254 1.21417 0.94818 0.99821 0.99014 1.21428 0.94933 0.99309 1.00091 1.21448 1.00833 0.96522 0.96029 1.21351 0.94039 1.00215 0.99074 1.22997 0.95247 0.97809 0.99712 1.20728 0.91506 1.00072 0.96978 0.90417 0.90614 0.90617 0.85660 0.75731 1.20279 1.21171 0.75069 0.91983 0.91923 0.89659 0.90166 0.85480 0.85236 0.85120 0.84830 0.84694 0.90350 0.90115 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.08 9.58 71.24 0.68 0.76 16 2 C -0.12 -0.23 5.78 -21.05 -0.12 -0.35 16 3 C -0.24 0.26 4.62 24.68 0.11 0.37 16 4 C -0.04 0.10 2.81 71.23 0.20 0.30 16 5 O -0.55 1.30 12.88 -148.98 -1.92 -0.62 16 6 Si 0.77 -2.90 32.59 68.60 2.24 -0.67 16 7 S 0.29 -1.43 21.00 -56.49 -1.19 -2.62 16 8 C -0.29 -0.88 6.45 24.08 0.16 -0.73 16 9 C 0.59 3.69 7.78 86.42 0.67 4.36 16 10 O -0.57 -8.75 16.84 -4.36 -0.07 -8.83 16 11 N -0.71 0.82 5.55 -467.17 -2.59 -1.78 16 12 C 0.13 -0.19 5.51 86.38 0.48 0.29 16 13 C -0.11 0.75 3.75 -10.27 -0.04 0.71 16 14 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 15 C -0.13 0.75 7.00 31.12 0.22 0.97 16 16 C -0.07 0.32 3.98 -11.01 -0.04 0.28 16 17 H 0.11 -0.75 8.09 -2.39 -0.02 -0.77 16 18 C -0.08 -0.01 5.29 -19.86 -0.11 -0.12 16 19 C -0.13 -0.18 8.62 22.27 0.19 0.01 16 20 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 21 C -0.14 -0.27 10.05 22.27 0.22 -0.05 16 22 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 23 C -0.13 -0.07 9.71 22.27 0.22 0.15 16 24 C -0.12 0.57 7.11 31.12 0.22 0.79 16 25 C -0.06 -0.27 9.78 21.72 0.21 -0.06 16 26 H 0.08 -0.16 8.14 -2.39 -0.02 -0.17 16 27 H 0.08 -0.15 6.81 -2.39 -0.02 -0.16 16 28 H 0.07 -0.10 8.10 -2.38 -0.02 -0.12 16 29 H 0.13 -0.25 6.08 -2.39 -0.01 -0.27 16 30 H 0.39 -4.20 8.35 -74.06 -0.62 -4.82 16 31 H -0.28 -0.59 7.11 99.48 0.71 0.12 16 32 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 33 H 0.41 -2.99 7.59 -92.71 -0.70 -3.70 16 34 H 0.06 0.07 7.84 -2.39 -0.02 0.05 16 35 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.08 -0.30 6.05 -2.39 -0.01 -0.32 16 38 H 0.13 -0.09 6.64 -2.91 -0.02 -0.11 16 39 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 40 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 41 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 42 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 43 H 0.08 -0.19 7.69 -2.38 -0.02 -0.21 16 44 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 Total: 0.00 -19.74 385.25 -0.08 -19.82 By element: Atomic # 1 Polarization: -12.75 SS G_CDS: -0.26 Total: -13.01 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 3.72 Total: 7.69 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -2.59 Total: -1.78 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.99 Total: -9.44 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.24 Total: -0.67 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.19 Total: -2.62 kcal Total: -19.74 -0.08 -19.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12130084_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.955 kcal (2) G-P(sol) polarization free energy of solvation -19.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds