Wall clock time and date at job start Thu Mar 4 2021 13:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21283 * 120.00077 * 2 1 4 4 C 1.50699 * 119.99832 * 179.97438 * 2 1 3 5 5 H 1.09008 * 112.90551 * 311.25154 * 4 2 1 6 6 C 1.54055 * 113.61951 * 82.50574 * 4 2 1 7 7 C 1.53779 * 86.98269 * 139.98264 * 6 4 2 8 8 H 1.09006 * 113.60630 * 219.97823 * 7 6 4 9 9 N 1.46500 * 113.61905 * 89.16535 * 7 6 4 10 10 C 1.34774 * 120.00242 * 105.85519 * 9 7 6 11 11 O 1.21724 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.46568 * 120.00281 * 180.02562 * 10 9 7 13 13 C 1.40844 * 126.58216 * 180.02562 * 12 10 9 14 14 C 1.40092 * 132.86831 * 0.04286 * 13 12 10 15 15 C 1.36445 * 119.25877 * 179.97438 * 14 13 12 16 16 C 1.50693 * 120.30044 * 179.97438 * 15 14 13 17 17 O 1.42907 * 109.47661 * 240.00492 * 16 15 14 18 18 Si 1.86298 * 109.47618 * 120.00182 * 16 15 14 19 19 C 1.40159 * 119.40733 * 0.25997 * 15 14 13 20 20 C 1.35192 * 120.31752 * 359.47393 * 19 15 14 21 21 N 1.36237 * 120.70421 * 0.52828 * 20 19 15 22 22 N 1.40020 * 132.01102 * 179.77662 * 21 20 19 23 23 C 1.30740 * 109.60150 * 179.97438 * 22 21 20 24 24 C 1.53777 * 113.61829 * 180.02562 * 4 2 1 25 25 H 0.96998 * 120.00622 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99190 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.61128 * 25.47040 * 6 4 2 28 28 H 1.09006 * 113.69152 * 254.49601 * 6 4 2 29 29 H 0.96999 * 119.99626 * 285.86373 * 9 7 6 30 30 H 1.08004 * 120.37280 * 359.97438 * 14 13 12 31 31 H 1.09000 * 109.46936 * 0.02562 * 16 15 14 32 32 H 0.96697 * 114.00527 * 179.97438 * 17 16 15 33 33 H 1.48506 * 109.99834 * 298.68714 * 18 16 15 34 34 H 1.48502 * 110.00011 * 59.99978 * 18 16 15 35 35 H 1.07999 * 119.84511 * 179.72537 * 19 15 14 36 36 H 1.08003 * 119.64695 * 180.26542 * 20 19 15 37 37 H 1.08009 * 125.62557 * 180.02562 * 23 22 21 38 38 H 1.08993 * 113.61811 * 105.47111 * 24 4 2 39 39 H 1.08999 * 113.61062 * 334.56607 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1012 -1.3051 0.0006 5 1 1.7400 -2.0032 0.7558 6 6 2.2504 -1.9323 -1.3986 7 6 3.6824 -2.3122 -0.9865 8 1 4.4150 -2.1819 -1.7831 9 7 3.7780 -3.6206 -0.3343 10 6 4.2954 -4.6704 -1.0024 11 8 4.6838 -4.5315 -2.1476 12 6 4.3905 -5.9795 -0.3501 13 6 4.9045 -7.1632 -0.9144 14 6 5.4481 -7.4624 -2.1704 15 6 5.8713 -8.7337 -2.4282 16 6 6.4592 -9.0816 -3.7714 17 8 5.6700 -10.1016 -4.3872 18 14 8.2030 -9.6971 -3.5456 19 6 5.7487 -9.7146 -1.4346 20 6 5.2258 -9.4020 -0.2278 21 7 4.8006 -8.1355 0.0391 22 7 4.2293 -7.5598 1.1805 23 6 3.9861 -6.2945 0.9586 24 6 3.6295 -1.1342 0.0011 25 1 -0.4851 -0.8400 -0.0004 26 1 -0.4849 0.8401 -0.0004 27 1 2.2076 -1.2055 -2.2097 28 1 1.6012 -2.7921 -1.5646 29 1 3.4687 -3.7312 0.5784 30 1 5.5313 -6.6954 -2.9262 31 1 6.4665 -8.1950 -4.4054 32 1 5.9906 -10.3754 -5.2574 33 1 9.0416 -8.6344 -2.9352 34 1 8.2072 -10.9057 -2.6826 35 1 6.0773 -10.7242 -1.6326 36 1 5.1404 -10.1653 0.5315 37 1 3.5473 -5.6049 1.6647 38 1 4.0927 -1.3502 0.9638 39 1 3.9633 -0.1895 -0.4279 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_11618758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:18:33 Heat of formation + Delta-G solvation = 23.009017 kcal Electronic energy + Delta-G solvation = -25588.182082 eV Core-core repulsion = 21692.886669 eV Total energy + Delta-G solvation = -3895.295412 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.41029 -41.60421 -40.24682 -39.23122 -38.40743 -37.27018 -34.68672 -34.45825 -34.04237 -32.26342 -30.43459 -27.73852 -26.96146 -26.75104 -25.08701 -23.89954 -23.07085 -22.13860 -21.42806 -20.26844 -19.35794 -18.55940 -18.28571 -17.96431 -17.80866 -17.51779 -17.04043 -16.93849 -16.68102 -16.09591 -15.94656 -15.83735 -15.48638 -15.29777 -15.18634 -14.58955 -14.43467 -14.29706 -13.94510 -13.62080 -13.41209 -13.32778 -13.09554 -12.89957 -12.58310 -12.18555 -11.98229 -11.77106 -11.70363 -11.59776 -11.05231 -10.92262 -10.84084 -10.66571 -10.23488 -10.12832 -8.90222 -5.01284 -0.68399 -0.23847 0.91198 0.95222 1.22900 1.58604 1.64148 1.91651 1.97157 2.10414 2.39316 2.63622 2.95799 3.10770 3.38539 3.41565 3.45545 3.60885 3.70517 3.75533 3.81119 3.91036 3.93716 4.13483 4.25957 4.28189 4.33232 4.48529 4.58291 4.65379 4.72709 4.82345 4.88758 4.95041 5.01120 5.04649 5.10590 5.19142 5.53621 5.56605 5.87980 6.19936 6.46292 6.55476 6.86245 7.24418 7.34009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.521 3.479 3 O -0.596 6.596 4 C -0.128 4.128 5 H 0.148 0.852 6 C -0.127 4.127 7 C 0.123 3.877 8 H 0.086 0.914 9 N -0.693 5.693 10 C 0.603 3.397 11 O -0.588 6.588 12 C -0.336 4.336 13 C 0.148 3.852 14 C -0.120 4.120 15 C -0.032 4.032 16 C -0.082 4.082 17 O -0.556 6.556 18 Si 0.802 3.198 19 C -0.152 4.152 20 C 0.110 3.890 21 N -0.275 5.275 22 N -0.337 5.337 23 C 0.134 3.866 24 C -0.120 4.120 25 H 0.418 0.582 26 H 0.404 0.596 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.416 0.584 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.409 0.591 33 H -0.306 1.306 34 H -0.273 1.273 35 H 0.182 0.818 36 H 0.205 0.795 37 H 0.241 0.759 38 H 0.094 0.906 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -6.085 -0.794 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.307 3.693 3 O -0.476 6.476 4 C -0.149 4.149 5 H 0.166 0.834 6 C -0.166 4.166 7 C 0.017 3.983 8 H 0.105 0.895 9 N -0.344 5.344 10 C 0.393 3.607 11 O -0.470 6.470 12 C -0.350 4.350 13 C 0.027 3.973 14 C -0.140 4.140 15 C -0.038 4.038 16 C -0.190 4.190 17 O -0.367 6.367 18 Si 0.705 3.295 19 C -0.172 4.172 20 C -0.016 4.016 21 N -0.039 5.039 22 N -0.158 5.158 23 C -0.047 4.047 24 C -0.158 4.158 25 H 0.249 0.751 26 H 0.235 0.765 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.253 0.747 30 H 0.173 0.827 31 H 0.110 0.890 32 H 0.261 0.739 33 H -0.234 1.234 34 H -0.199 1.199 35 H 0.199 0.801 36 H 0.222 0.778 37 H 0.257 0.743 38 H 0.113 0.887 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.553 -6.445 0.501 6.488 hybrid contribution -1.017 1.180 0.043 1.559 sum -1.571 -5.265 0.544 5.521 Atomic orbital electron populations 1.43833 1.06551 1.13706 1.76085 1.20905 0.83339 0.91216 0.73886 1.90747 1.69444 1.35464 1.51973 1.22946 0.96263 0.94618 1.01079 0.83440 1.23340 0.97180 1.00906 0.95147 1.21710 0.97944 0.82155 0.96470 0.89536 1.45155 1.63732 1.07755 1.17801 1.16940 0.76020 0.83028 0.84688 1.90765 1.51543 1.85245 1.19417 1.19673 1.23702 0.93963 0.97711 1.19555 0.97453 0.89626 0.90647 1.20708 1.00064 0.98129 0.95069 1.19865 0.94262 0.92818 0.96849 1.24872 1.06281 0.96144 0.91745 1.86422 1.55318 1.55925 1.39033 0.94242 0.70723 0.77297 0.87239 1.21156 1.02680 1.02216 0.91198 1.22170 0.95881 0.83960 0.99559 1.46301 1.38845 1.08269 1.10497 1.77579 1.23513 1.11190 1.03494 1.24701 0.92713 0.92683 0.94588 1.23165 0.94031 0.97878 1.00768 0.75099 0.76521 0.89418 0.89091 0.74672 0.82719 0.88985 0.73879 1.23393 1.19900 0.80084 0.77776 0.74260 0.88744 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 4.57 8.87 -173.53 -1.54 3.03 16 2 C 0.52 0.79 7.63 87.66 0.67 1.45 16 3 O -0.60 -7.30 16.74 -3.04 -0.05 -7.35 16 4 C -0.13 0.58 4.04 -10.92 -0.04 0.54 16 5 H 0.15 -1.67 8.14 -2.38 -0.02 -1.69 16 6 C -0.13 0.34 7.45 31.21 0.23 0.57 16 7 C 0.12 0.00 4.30 45.53 0.20 0.19 16 8 H 0.09 0.45 7.50 -2.38 -0.02 0.44 16 9 N -0.69 0.99 5.25 -444.03 -2.33 -1.34 16 10 C 0.60 4.07 7.78 86.42 0.67 4.75 16 11 O -0.59 -8.56 15.32 -4.43 -0.07 -8.63 16 12 C -0.34 -2.01 6.17 -19.90 -0.12 -2.13 16 13 C 0.15 1.26 6.76 39.49 0.27 1.53 16 14 C -0.12 -0.87 9.35 22.30 0.21 -0.66 16 15 C -0.03 -0.10 4.53 -19.82 -0.09 -0.19 16 16 C -0.08 0.23 2.81 71.23 0.20 0.43 16 17 O -0.56 2.11 12.75 -148.98 -1.90 0.21 16 18 Si 0.80 -4.04 31.98 68.60 2.19 -1.84 16 19 C -0.15 -0.09 8.67 22.03 0.19 0.10 16 20 C 0.11 0.14 11.17 83.31 0.93 1.07 16 21 N -0.28 -1.79 3.86 -187.28 -0.72 -2.51 16 22 N -0.34 -1.95 12.57 -56.62 -0.71 -2.66 16 23 C 0.13 0.10 11.44 85.42 0.98 1.08 16 24 C -0.12 0.17 7.15 31.13 0.22 0.40 16 25 H 0.42 -4.96 8.83 -92.71 -0.82 -5.78 16 26 H 0.40 -2.23 8.93 -92.71 -0.83 -3.06 16 27 H 0.09 -0.04 8.10 -2.39 -0.02 -0.06 16 28 H 0.09 -0.38 8.14 -2.38 -0.02 -0.40 16 29 H 0.42 -3.60 7.62 -92.71 -0.71 -4.31 16 30 H 0.16 1.28 7.01 -2.91 -0.02 1.26 16 31 H 0.09 -0.44 7.70 -2.39 -0.02 -0.46 16 32 H 0.41 -5.81 8.74 -74.06 -0.65 -6.46 16 33 H -0.31 -1.05 7.11 99.48 0.71 -0.35 16 34 H -0.27 0.28 7.08 99.48 0.70 0.98 16 35 H 0.18 -0.73 7.55 -2.91 -0.02 -0.75 16 36 H 0.21 -1.12 8.06 -2.91 -0.02 -1.14 16 37 H 0.24 -2.43 7.46 -2.91 -0.02 -2.46 16 38 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.09 0.30 7.43 -2.39 -0.02 0.29 16 Total: 0.00 -33.90 340.14 -2.43 -36.33 By element: Atomic # 1 Polarization: -22.54 SS G_CDS: -1.81 Total: -24.35 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 4.51 Total: 9.12 kcal Atomic # 7 Polarization: 1.82 SS G_CDS: -5.31 Total: -3.49 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -2.02 Total: -15.77 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.19 Total: -1.84 kcal Total: -33.90 -2.43 -36.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_11618758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.337 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds