Wall clock time and date at job start Thu Mar 4 2021 13:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35452 * 125.56754 * 2 1 4 4 C 1.50703 * 126.06227 * 359.95173 * 3 2 1 5 5 O 1.42898 * 109.47155 * 210.02713 * 4 3 2 6 6 Si 1.86300 * 109.47336 * 330.02863 * 4 3 2 7 7 C 1.39831 * 107.86835 * 179.97438 * 3 2 1 8 8 C 1.50703 * 126.45684 * 179.97438 * 7 3 2 9 9 C 1.37869 * 107.08438 * 0.24262 * 7 3 2 10 10 C 1.46677 * 126.23296 * 179.76609 * 9 7 3 11 11 O 1.21703 * 119.99956 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00107 * 179.97438 * 10 9 7 13 13 C 1.46506 * 120.00033 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.84917 * 23.79740 * 13 12 10 15 15 C 1.53782 * 113.61362 * 154.99883 * 13 12 10 16 16 C 1.53784 * 87.08166 * 139.97936 * 15 13 12 17 17 H 1.08997 * 113.61264 * 220.01591 * 16 15 13 18 18 C 1.50698 * 113.61067 * 89.11393 * 16 15 13 19 19 N 1.34785 * 119.99510 * 180.02562 * 18 16 15 20 20 O 1.21279 * 120.00406 * 0.02562 * 18 16 15 21 21 C 1.53781 * 87.07933 * 334.56661 * 16 15 13 22 22 N 1.35536 * 125.56554 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46712 * 90.00006 * 1 2 3 24 24 H 1.09003 * 109.46977 * 210.00188 * 1 2 3 25 25 H 1.08994 * 109.47245 * 330.00432 * 1 2 3 26 26 H 1.09005 * 109.46706 * 90.02977 * 4 3 2 27 27 H 0.96698 * 113.99897 * 60.00119 * 5 4 3 28 28 H 1.48502 * 109.99855 * 179.97438 * 6 4 3 29 29 H 1.48499 * 110.00009 * 301.31745 * 6 4 3 30 30 H 1.09002 * 109.47152 * 89.99954 * 8 7 3 31 31 H 1.09001 * 109.46980 * 330.00054 * 8 7 3 32 32 H 1.09004 * 109.47113 * 210.00035 * 8 7 3 33 33 H 0.97005 * 120.00370 * 359.97438 * 12 10 9 34 34 H 1.09004 * 113.61246 * 254.52940 * 15 13 12 35 35 H 1.09005 * 113.61525 * 25.34415 * 15 13 12 36 36 H 0.96995 * 119.99556 * 0.02562 * 19 18 16 37 37 H 0.96997 * 119.99422 * 180.02562 * 19 18 16 38 38 H 1.09004 * 113.61571 * 270.88397 * 21 16 15 39 39 H 1.08998 * 113.61710 * 139.98318 * 21 16 15 40 40 H 0.97002 * 125.67874 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 1.8199 2.5320 -0.0010 5 8 2.7772 3.3514 -0.6750 6 14 0.1808 2.6415 -0.8797 7 6 3.6270 0.6767 0.0006 8 6 4.8486 1.5592 0.0003 9 6 3.6122 -0.7019 -0.0046 10 6 4.7859 -1.5815 -0.0108 11 8 5.9049 -1.1030 -0.0122 12 7 4.6253 -2.9196 -0.0150 13 6 5.7977 -3.7982 -0.0218 14 1 6.6888 -3.3179 0.3824 15 6 5.5267 -5.1916 0.5697 16 6 6.4052 -5.7554 -0.5596 17 1 6.0234 -6.6818 -0.9887 18 6 7.8680 -5.8320 -0.2054 19 7 8.7546 -6.3069 -1.1026 20 8 8.2474 -5.4664 0.8870 21 6 6.0322 -4.5020 -1.3688 22 7 2.2953 -1.1025 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.7052 2.8775 1.0265 27 1 2.9301 3.1008 -1.5963 28 1 -0.2987 4.0470 -0.8869 29 1 0.3166 2.1435 -2.2720 30 1 5.1429 1.7727 1.0279 31 1 4.6221 2.4930 -0.5143 32 1 5.6644 1.0501 -0.5131 33 1 3.7334 -3.3011 -0.0136 34 1 5.9497 -5.3335 1.5642 35 1 4.4823 -5.4973 0.5063 36 1 8.4511 -6.5989 -1.9764 37 1 9.6960 -6.3566 -0.8745 38 1 5.1263 -4.6198 -1.9635 39 1 6.8632 -4.0873 -1.9393 40 1 1.9834 -2.0210 0.0006 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12297754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:18:36 Heat of formation + Delta-G solvation = -49.198704 kcal Electronic energy + Delta-G solvation = -23816.123836 eV Core-core repulsion = 20212.263975 eV Total energy + Delta-G solvation = -3603.859861 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69262 -41.67503 -40.16142 -38.35744 -37.91525 -34.92043 -34.55544 -33.65831 -32.90111 -29.30486 -28.15909 -26.79168 -26.77160 -25.92553 -23.14746 -22.33679 -20.85090 -20.64520 -20.15377 -19.26171 -18.27106 -18.06910 -17.58453 -17.12358 -16.76542 -16.61531 -16.07752 -15.96769 -15.69816 -15.48671 -15.03121 -14.79131 -14.37414 -14.31629 -14.02271 -13.91097 -13.72116 -13.57269 -13.36201 -13.28010 -13.10431 -13.06876 -12.55051 -12.32157 -11.89247 -11.81219 -11.71394 -11.19847 -11.02429 -10.72576 -10.51930 -10.24098 -9.55044 -8.97062 -4.75689 0.34067 1.23789 1.51326 1.67562 1.71337 1.93970 2.07992 2.14899 2.23562 2.51646 3.34052 3.39591 3.42630 3.68801 3.83149 3.84390 3.85972 3.97960 4.20644 4.25860 4.49310 4.53327 4.64127 4.66898 4.67432 4.75872 4.80399 4.81106 4.82373 4.89415 4.95678 5.02402 5.13788 5.23698 5.32492 5.42785 5.69957 5.81796 5.82560 6.38891 6.40852 6.52331 6.60717 7.08831 7.28492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.089 3.911 3 C -0.234 4.234 4 C -0.054 4.054 5 O -0.550 6.550 6 Si 0.764 3.236 7 C -0.071 4.071 8 C -0.094 4.094 9 C -0.082 4.082 10 C 0.585 3.415 11 O -0.573 6.573 12 N -0.702 5.702 13 C 0.111 3.889 14 H 0.075 0.925 15 C -0.118 4.118 16 C -0.129 4.129 17 H 0.150 0.850 18 C 0.521 3.479 19 N -0.837 5.837 20 O -0.595 6.595 21 C -0.121 4.121 22 N -0.514 5.514 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.381 0.619 28 H -0.306 1.306 29 H -0.289 1.289 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.133 0.867 36 H 0.419 0.581 37 H 0.405 0.595 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 -8.768 -4.427 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.031 4.031 3 C -0.240 4.240 4 C -0.163 4.163 5 O -0.357 6.357 6 Si 0.669 3.331 7 C -0.080 4.080 8 C -0.151 4.151 9 C -0.194 4.194 10 C 0.375 3.625 11 O -0.453 6.453 12 N -0.354 5.354 13 C 0.006 3.994 14 H 0.093 0.907 15 C -0.157 4.157 16 C -0.151 4.151 17 H 0.168 0.832 18 C 0.306 3.694 19 N -0.400 5.400 20 O -0.476 6.476 21 C -0.160 4.160 22 N -0.113 5.113 23 H 0.122 0.878 24 H 0.137 0.863 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.230 0.770 28 H -0.235 1.235 29 H -0.216 1.216 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.251 0.749 37 H 0.236 0.764 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.649 -7.775 -3.791 12.958 hybrid contribution 1.731 -0.229 -0.810 1.925 sum -7.919 -8.004 -4.601 12.163 Atomic orbital electron populations 1.20721 0.84258 1.05742 1.05803 1.20716 0.95120 0.84745 1.02540 1.19658 0.92411 0.95866 1.16050 1.24690 1.02195 0.86562 1.02809 1.86513 1.61958 1.57704 1.29540 0.94425 0.78881 0.79897 0.79907 1.19922 0.95400 0.91495 1.01186 1.20420 0.94212 0.98969 1.01498 1.19860 0.83844 0.93601 1.22119 1.17333 0.87220 0.82437 0.75537 1.90828 1.26227 1.75964 1.52276 1.45644 1.10245 1.04503 1.74960 1.22600 0.88956 0.89529 0.98342 0.90684 1.23277 1.01755 0.92287 0.98347 1.22217 0.90435 1.02401 1.00010 0.83223 1.20722 0.89618 0.75297 0.83715 1.43758 1.11317 1.66178 1.18751 1.90765 1.81455 1.50286 1.25051 1.23412 1.03692 0.92852 0.96080 1.41656 1.03754 1.09361 1.56546 0.87814 0.86295 0.86560 0.87052 0.77019 1.23457 1.21598 0.93073 0.89621 0.92688 0.74915 0.91645 0.84925 0.74910 0.76393 0.85390 0.91541 0.72364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.52 8.21 71.24 0.59 2.11 16 2 C 0.09 -0.41 6.84 41.34 0.28 -0.12 16 3 C -0.23 -0.57 5.38 -20.12 -0.11 -0.68 16 4 C -0.05 -0.09 3.03 71.24 0.22 0.12 16 5 O -0.55 -3.25 10.20 -148.98 -1.52 -4.77 16 6 Si 0.76 -1.94 26.76 68.60 1.84 -0.11 16 7 C -0.07 -0.59 6.15 -19.57 -0.12 -0.71 16 8 C -0.09 -1.09 9.52 71.24 0.68 -0.41 16 9 C -0.08 -0.40 7.06 40.35 0.28 -0.11 16 10 C 0.59 4.79 7.79 86.45 0.67 5.46 16 11 O -0.57 -10.44 14.39 -4.36 -0.06 -10.50 16 12 N -0.70 0.52 5.35 -443.98 -2.38 -1.86 16 13 C 0.11 0.19 3.89 45.52 0.18 0.37 16 14 H 0.07 0.91 7.39 -2.39 -0.02 0.89 16 15 C -0.12 0.41 7.20 31.12 0.22 0.63 16 16 C -0.13 0.68 4.34 -11.01 -0.05 0.63 16 17 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 18 C 0.52 1.39 7.36 87.66 0.64 2.03 16 19 N -0.84 3.78 8.87 -173.53 -1.54 2.24 16 20 O -0.60 -8.41 16.58 -3.03 -0.05 -8.46 16 21 C -0.12 0.57 7.46 31.12 0.23 0.80 16 22 N -0.51 2.56 5.99 -171.94 -1.03 1.53 16 23 H 0.10 -1.61 7.13 -2.39 -0.02 -1.63 16 24 H 0.12 -2.25 8.14 -2.39 -0.02 -2.27 16 25 H 0.12 -1.86 5.18 -2.39 -0.01 -1.87 16 26 H 0.11 0.11 7.96 -2.38 -0.02 0.09 16 27 H 0.38 0.53 8.48 -74.06 -0.63 -0.10 16 28 H -0.31 -1.80 7.11 99.48 0.71 -1.09 16 29 H -0.29 -0.61 7.11 99.48 0.71 0.09 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.81 5.48 -2.39 -0.01 0.80 16 32 H 0.05 0.84 6.47 -2.38 -0.02 0.82 16 33 H 0.41 -3.93 7.86 -92.70 -0.73 -4.66 16 34 H 0.06 0.20 7.43 -2.39 -0.02 0.18 16 35 H 0.13 -1.50 8.12 -2.38 -0.02 -1.51 16 36 H 0.42 -4.87 8.83 -92.71 -0.82 -5.69 16 37 H 0.41 -1.76 8.93 -92.71 -0.83 -2.59 16 38 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 39 H 0.07 -0.11 8.09 -2.39 -0.02 -0.13 16 40 H 0.43 -5.83 8.19 -92.71 -0.76 -6.59 16 Total: 0.00 -36.05 324.71 -3.60 -39.65 By element: Atomic # 1 Polarization: -25.27 SS G_CDS: -2.58 Total: -27.85 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 3.72 Total: 10.12 kcal Atomic # 7 Polarization: 6.85 SS G_CDS: -4.95 Total: 1.90 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.63 Total: -23.73 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 1.84 Total: -0.11 kcal Total: -36.05 -3.60 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12297754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.549 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds