Wall clock time and date at job start Thu Mar 4 2021 13:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34852 * 125.90052 * 2 1 4 4 C 1.40941 * 107.46731 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.26700 * 180.26002 * 4 3 2 6 6 O 1.42908 * 109.47129 * 104.69078 * 5 4 3 7 7 Si 1.86303 * 109.47365 * 344.69131 * 5 4 3 8 8 C 1.34854 * 107.46651 * 0.02562 * 4 3 2 9 9 C 1.50696 * 125.89644 * 180.02562 * 8 4 3 10 10 N 1.36561 * 108.19958 * 0.02562 * 8 4 3 11 11 C 1.40234 * 125.66600 * 180.02562 * 10 8 4 12 12 C 1.38909 * 119.98962 * 269.99458 * 11 10 8 13 13 C 1.50696 * 119.88678 * 359.96055 * 12 11 10 14 14 C 1.38266 * 120.22319 * 179.97438 * 12 11 10 15 15 C 1.37975 * 120.22062 * 359.97438 * 14 12 11 16 16 C 1.39615 * 119.98141 * 0.02562 * 15 14 12 17 17 C 1.47861 * 120.11205 * 180.02562 * 16 15 14 18 18 O 1.21547 * 120.00102 * 179.97438 * 17 16 15 19 19 N 1.34778 * 119.99834 * 359.97438 * 17 16 15 20 20 C 1.46505 * 120.00178 * 180.02562 * 19 17 16 21 21 H 1.09003 * 112.84660 * 25.32796 * 20 19 17 22 22 C 1.53771 * 113.61593 * 156.52774 * 20 19 17 23 23 C 1.53779 * 87.08501 * 139.97755 * 22 20 19 24 24 H 1.08997 * 113.61973 * 220.02110 * 23 22 20 25 25 C 1.50709 * 113.61128 * 89.19652 * 23 22 20 26 26 N 1.34777 * 119.99603 * 180.02562 * 25 23 22 27 27 O 1.21274 * 119.99801 * 0.02562 * 25 23 22 28 28 C 1.53783 * 113.61202 * 254.13448 * 20 19 17 29 29 C 1.38581 * 119.99593 * 89.71938 * 11 10 8 30 30 H 1.09002 * 109.46775 * 269.97799 * 1 2 3 31 31 H 1.09005 * 109.47118 * 29.97093 * 1 2 3 32 32 H 1.08991 * 109.47789 * 149.97503 * 1 2 3 33 33 H 1.07998 * 126.26723 * 0.02610 * 3 2 1 34 34 H 1.08998 * 109.47425 * 224.68900 * 5 4 3 35 35 H 0.96696 * 113.99954 * 180.02562 * 6 5 4 36 36 H 1.48498 * 109.99899 * 298.68059 * 7 5 4 37 37 H 1.48503 * 109.99499 * 59.99814 * 7 5 4 38 38 H 1.09001 * 109.47087 * 90.02724 * 9 8 4 39 39 H 1.09003 * 109.47195 * 210.02347 * 9 8 4 40 40 H 1.09003 * 109.47505 * 330.02006 * 9 8 4 41 41 H 1.09001 * 109.47650 * 90.00062 * 13 12 11 42 42 H 1.09003 * 109.46861 * 209.99801 * 13 12 11 43 43 H 1.09000 * 109.47225 * 329.99598 * 13 12 11 44 44 H 1.08003 * 119.88519 * 179.97438 * 14 12 11 45 45 H 1.07999 * 120.01003 * 180.02562 * 15 14 12 46 46 H 0.97005 * 119.99669 * 359.97438 * 19 17 16 47 47 H 1.09001 * 113.61708 * 254.52941 * 22 20 19 48 48 H 1.09003 * 113.61717 * 25.34775 * 22 20 19 49 49 H 0.96997 * 120.00104 * 359.97438 * 26 25 23 50 50 H 0.97000 * 119.99506 * 179.97438 * 26 25 23 51 51 H 1.08996 * 113.61252 * 334.56852 * 28 20 19 52 52 H 1.09000 * 113.61251 * 105.46324 * 28 20 19 53 53 H 1.07999 * 120.10736 * 0.02562 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6467 -0.0006 5 6 4.8647 1.5175 0.0047 6 8 5.4495 1.5079 1.3086 7 14 4.3931 3.2611 -0.4516 8 6 3.6121 -0.7017 -0.0015 9 6 4.8177 -1.6057 -0.0019 10 7 2.3078 -1.1062 -0.0021 11 6 1.8643 -2.4366 -0.0026 12 6 1.6451 -3.0950 -1.2059 13 6 1.8838 -2.3768 -2.5091 14 6 1.2084 -4.4069 -1.2121 15 6 0.9880 -5.0710 -0.0229 16 6 1.2055 -4.4178 1.1917 17 6 0.9707 -5.1269 2.4677 18 8 1.1612 -4.5565 3.5240 19 7 0.5456 -6.4059 2.4596 20 6 0.3124 -7.1084 3.7239 21 1 0.0846 -6.4323 4.5480 22 6 -0.6702 -8.2850 3.6027 23 6 0.2566 -9.0551 4.5582 24 1 0.3850 -10.1040 4.2910 25 6 -0.0796 -8.8589 6.0141 26 7 0.6519 -9.4751 6.9636 27 8 -1.0084 -8.1465 6.3312 28 6 1.3956 -8.1468 4.0605 29 6 1.6504 -3.0960 1.1974 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8896 -0.5142 33 1 1.9670 2.1204 0.0004 34 1 5.5842 1.1345 -0.7190 35 1 6.2471 2.0491 1.3859 36 1 3.8129 3.2892 -1.8182 37 1 3.4125 3.7947 0.5276 38 1 5.1079 -1.8247 1.0257 39 1 4.5748 -2.5352 -0.5168 40 1 5.6426 -1.1112 -0.5149 41 1 2.9164 -2.5280 -2.8236 42 1 1.2107 -2.7718 -3.2701 43 1 1.6967 -1.3113 -2.3763 44 1 1.0393 -4.9134 -2.1509 45 1 0.6473 -6.0958 -0.0317 46 1 0.3933 -6.8609 1.6166 47 1 -1.6544 -8.0770 4.0224 48 1 -0.7188 -8.7119 2.6010 49 1 1.3946 -10.0452 6.7098 50 1 0.4357 -9.3485 7.9007 51 1 1.9139 -8.5366 3.1845 52 1 2.0768 -7.8271 4.8491 53 1 1.8243 -2.5869 2.1338 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12335842.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:18:50 Heat of formation + Delta-G solvation = -7.833497 kcal Electronic energy + Delta-G solvation = -35484.364622 eV Core-core repulsion = 30902.781073 eV Total energy + Delta-G solvation = -4581.583549 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.188 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.07994 -41.88952 -40.99793 -39.70540 -38.36937 -37.64049 -35.22429 -34.71249 -34.12967 -33.79350 -33.75155 -30.77556 -30.27418 -28.93864 -27.42689 -26.79484 -26.71443 -24.83843 -24.06647 -23.67584 -22.75426 -22.03336 -21.07483 -20.50549 -19.96082 -18.76792 -18.34164 -18.29027 -18.06673 -17.56893 -17.38525 -16.91196 -16.67670 -16.31567 -16.01665 -15.76710 -15.70855 -15.45952 -15.37330 -15.25714 -14.92799 -14.83181 -14.62603 -14.37857 -14.30991 -14.22276 -13.83433 -13.68823 -13.63535 -13.43462 -13.34591 -13.27460 -13.24316 -13.07618 -13.06632 -12.79849 -12.73058 -12.44072 -12.41203 -11.94453 -11.90831 -11.71773 -11.24830 -11.02225 -10.72091 -10.32444 -10.28100 -10.15501 -9.94534 -9.87838 -8.98067 -4.94560 -0.50958 -0.09929 0.91801 1.38495 1.50646 1.53456 1.54481 1.63469 1.73300 1.98783 2.09798 2.47963 2.52584 3.32748 3.38103 3.41877 3.54695 3.56355 3.67569 3.70473 3.73295 3.82576 3.87381 3.88930 4.07281 4.10566 4.11519 4.23000 4.27899 4.32166 4.46394 4.47040 4.48244 4.50277 4.52309 4.56768 4.62768 4.64879 4.66504 4.76788 4.82829 4.83788 4.90530 4.92839 4.97793 4.98212 4.98875 5.02222 5.05529 5.18828 5.20760 5.40088 5.50799 5.80123 5.82104 5.98591 6.35117 6.37856 6.41428 7.01645 7.03300 7.28928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.022 3.978 3 C -0.219 4.219 4 C -0.180 4.180 5 C -0.040 4.040 6 O -0.569 6.569 7 Si 0.787 3.213 8 C 0.048 3.952 9 C -0.076 4.076 10 N -0.399 5.399 11 C 0.085 3.915 12 C -0.041 4.041 13 C -0.121 4.121 14 C -0.106 4.106 15 C -0.050 4.050 16 C -0.142 4.142 17 C 0.556 3.444 18 O -0.587 6.587 19 N -0.692 5.692 20 C 0.108 3.892 21 H 0.072 0.928 22 C -0.117 4.117 23 C -0.129 4.129 24 H 0.151 0.849 25 C 0.520 3.480 26 N -0.837 5.837 27 O -0.596 6.596 28 C -0.122 4.122 29 C -0.058 4.058 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.398 0.602 36 H -0.295 1.295 37 H -0.309 1.309 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.180 0.820 45 H 0.177 0.823 46 H 0.421 0.579 47 H 0.065 0.935 48 H 0.136 0.864 49 H 0.420 0.580 50 H 0.405 0.595 51 H 0.131 0.869 52 H 0.065 0.935 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -9.610 -8.847 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.243 4.243 4 C -0.186 4.186 5 C -0.150 4.150 6 O -0.378 6.378 7 Si 0.694 3.306 8 C -0.063 4.063 9 C -0.134 4.134 10 N -0.074 5.074 11 C -0.003 4.003 12 C -0.042 4.042 13 C -0.177 4.177 14 C -0.124 4.124 15 C -0.068 4.068 16 C -0.146 4.146 17 C 0.344 3.656 18 O -0.468 6.468 19 N -0.344 5.344 20 C 0.003 3.997 21 H 0.090 0.910 22 C -0.155 4.155 23 C -0.151 4.151 24 H 0.169 0.831 25 C 0.306 3.694 26 N -0.400 5.400 27 O -0.476 6.476 28 C -0.160 4.160 29 C -0.078 4.078 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.248 0.752 36 H -0.223 1.223 37 H -0.237 1.237 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.197 0.803 45 H 0.194 0.806 46 H 0.261 0.739 47 H 0.084 0.916 48 H 0.154 0.846 49 H 0.251 0.749 50 H 0.236 0.764 51 H 0.149 0.851 52 H 0.083 0.917 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.174 -8.941 -8.191 12.534 hybrid contribution -0.290 -0.132 0.962 1.014 sum 2.883 -9.073 -7.228 11.953 Atomic orbital electron populations 1.20358 0.86589 1.04081 1.02905 1.20669 0.94447 0.84923 1.08706 1.20623 0.93162 0.97435 1.13094 1.18951 0.93974 0.92559 1.13153 1.24111 0.94057 1.08554 0.88310 1.86497 1.47345 1.74238 1.29733 0.94969 0.84593 0.76015 0.75029 1.20629 0.84757 0.94010 1.06855 1.20315 0.92860 0.97428 1.02757 1.41336 1.05344 1.03181 1.57527 1.17439 1.05771 0.83551 0.93584 1.20537 0.94515 0.95137 0.93995 1.20917 1.03956 0.99638 0.93220 1.21394 0.98539 0.92326 1.00184 1.21811 0.94003 1.01190 0.89765 1.19691 1.06746 0.94229 0.93905 1.18552 0.76246 0.82312 0.88460 1.90804 1.53519 1.68082 1.34398 1.45681 1.66772 1.11683 1.10267 1.22637 0.98172 0.92440 0.86498 0.90993 1.23277 0.97634 0.93388 1.01248 1.22256 0.99162 1.03865 0.89802 0.83115 1.20753 0.81106 0.78058 0.89524 1.43760 1.35472 1.51004 1.09761 1.90762 1.32226 1.40503 1.84133 1.23453 0.95552 0.94212 1.02830 1.21153 0.95428 0.94204 0.96998 0.91311 0.88889 0.90937 0.85353 0.89621 0.75168 1.22264 1.23747 0.91569 0.91164 0.88483 0.89553 0.88089 0.92926 0.80295 0.80601 0.73928 0.91593 0.84577 0.74884 0.76430 0.85068 0.91663 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.09 71.24 0.72 0.27 16 2 C 0.02 0.23 6.32 41.04 0.26 0.49 16 3 C -0.22 -2.84 9.28 22.15 0.21 -2.63 16 4 C -0.18 -2.04 5.39 -19.98 -0.11 -2.15 16 5 C -0.04 -0.20 2.59 71.23 0.18 -0.02 16 6 O -0.57 -3.11 12.86 -148.98 -1.92 -5.03 16 7 Si 0.79 2.60 30.84 68.60 2.12 4.72 16 8 C 0.05 0.47 6.86 41.04 0.28 0.75 16 9 C -0.08 -0.33 9.87 71.23 0.70 0.37 16 10 N -0.40 -3.71 1.85 -320.37 -0.59 -4.31 16 11 C 0.09 0.48 4.49 38.04 0.17 0.65 16 12 C -0.04 0.04 5.90 -19.70 -0.12 -0.08 16 13 C -0.12 0.33 9.76 71.23 0.70 1.03 16 14 C -0.11 0.74 9.67 22.21 0.21 0.95 16 15 C -0.05 0.32 9.54 22.54 0.21 0.53 16 16 C -0.14 -0.42 5.87 -20.10 -0.12 -0.54 16 17 C 0.56 4.01 7.77 86.79 0.67 4.68 16 18 O -0.59 -10.96 15.96 -3.86 -0.06 -11.03 16 19 N -0.69 1.06 5.31 -442.89 -2.35 -1.29 16 20 C 0.11 0.15 3.87 45.51 0.18 0.32 16 21 H 0.07 0.87 7.44 -2.39 -0.02 0.85 16 22 C -0.12 0.46 7.20 31.12 0.22 0.69 16 23 C -0.13 0.71 4.35 -10.95 -0.05 0.67 16 24 H 0.15 -1.95 8.14 -2.39 -0.02 -1.97 16 25 C 0.52 1.34 7.36 87.66 0.65 1.99 16 26 N -0.84 3.81 8.87 -173.53 -1.54 2.27 16 27 O -0.60 -8.37 16.59 -3.01 -0.05 -8.42 16 28 C -0.12 0.61 7.47 31.18 0.23 0.84 16 29 C -0.06 -0.48 9.51 22.65 0.22 -0.27 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.07 0.25 7.83 -2.39 -0.02 0.23 16 33 H 0.13 1.66 6.56 -2.91 -0.02 1.64 16 34 H 0.09 0.00 7.50 -2.39 -0.02 -0.02 16 35 H 0.40 -2.33 8.74 -74.06 -0.65 -2.98 16 36 H -0.29 -2.61 7.11 99.48 0.71 -1.91 16 37 H -0.31 -3.71 7.05 99.48 0.70 -3.01 16 38 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 0.14 7.83 -2.39 -0.02 0.12 16 40 H 0.10 0.08 7.50 -2.39 -0.02 0.06 16 41 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.10 -0.76 8.08 -2.39 -0.02 -0.78 16 43 H 0.05 0.12 6.99 -2.39 -0.02 0.11 16 44 H 0.18 -2.52 8.06 -2.91 -0.02 -2.54 16 45 H 0.18 -2.69 6.40 -2.91 -0.02 -2.71 16 46 H 0.42 -4.49 6.74 -92.70 -0.62 -5.12 16 47 H 0.07 0.16 7.43 -2.39 -0.02 0.15 16 48 H 0.14 -1.64 8.11 -2.39 -0.02 -1.66 16 49 H 0.42 -4.91 8.83 -92.71 -0.82 -5.73 16 50 H 0.40 -1.74 8.93 -92.71 -0.83 -2.57 16 51 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 52 H 0.06 -0.10 8.10 -2.39 -0.02 -0.12 16 53 H 0.11 1.60 7.65 -2.91 -0.02 1.58 16 Total: 0.00 -40.82 437.18 -0.86 -41.68 By element: Atomic # 1 Polarization: -25.24 SS G_CDS: -1.89 Total: -27.14 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.43 Total: 8.54 kcal Atomic # 7 Polarization: 1.16 SS G_CDS: -4.49 Total: -3.33 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -2.03 Total: -24.47 kcal Atomic # 14 Polarization: 2.60 SS G_CDS: 2.12 Total: 4.72 kcal Total: -40.82 -0.86 -41.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12335842.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.845 kcal (2) G-P(sol) polarization free energy of solvation -40.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds