Wall clock time and date at job start Thu Mar 4 2021 13:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34808 * 125.90243 * 2 1 4 4 C 1.40988 * 107.48568 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.25530 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.46690 * 254.97238 * 5 4 3 7 7 Si 1.86299 * 109.47371 * 14.97155 * 5 4 3 8 8 C 1.34806 * 107.48756 * 359.76758 * 4 3 2 9 9 C 1.50702 * 125.90339 * 180.22595 * 8 4 3 10 10 N 1.36650 * 125.90515 * 179.97438 * 2 1 3 11 11 C 1.39671 * 125.68185 * 359.96195 * 10 2 1 12 12 C 1.40206 * 120.15506 * 270.00380 * 11 10 2 13 13 C 1.47574 * 120.18924 * 0.04553 * 12 11 10 14 14 O 1.21586 * 120.00777 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99818 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00094 * 179.97438 * 15 13 12 17 17 H 1.09001 * 112.84738 * 336.20138 * 16 15 13 18 18 C 1.53778 * 113.61081 * 107.50435 * 16 15 13 19 19 C 1.53780 * 87.08407 * 89.11814 * 18 16 15 20 20 H 1.09006 * 113.61343 * 270.88812 * 19 18 16 21 21 C 1.50693 * 113.61874 * 139.97844 * 19 18 16 22 22 N 1.34781 * 119.99812 * 82.50207 * 21 19 18 23 23 O 1.21282 * 120.00203 * 262.50190 * 21 19 18 24 24 C 1.53778 * 113.61356 * 204.99853 * 16 15 13 25 25 C 1.39655 * 119.61551 * 180.02562 * 12 11 10 26 26 C 1.37830 * 119.91581 * 0.02562 * 25 12 11 27 27 C 1.38537 * 120.31279 * 359.71584 * 26 25 12 28 28 C 1.38068 * 120.38844 * 0.56282 * 27 26 25 29 29 H 1.08996 * 109.46865 * 269.99811 * 1 2 3 30 30 H 1.08994 * 109.47056 * 30.00265 * 1 2 3 31 31 H 1.09004 * 109.46903 * 150.00152 * 1 2 3 32 32 H 1.08000 * 126.25854 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47517 * 134.97575 * 5 4 3 34 34 H 0.96694 * 114.00155 * 60.00475 * 6 5 4 35 35 H 1.48501 * 109.99742 * 58.68067 * 7 5 4 36 36 H 1.48494 * 110.00296 * 180.02562 * 7 5 4 37 37 H 1.09006 * 109.47011 * 270.16927 * 9 8 4 38 38 H 1.08997 * 109.47515 * 30.16855 * 9 8 4 39 39 H 1.09001 * 109.47102 * 150.17233 * 9 8 4 40 40 H 0.96997 * 119.99860 * 0.02562 * 15 13 12 41 41 H 1.09000 * 113.61656 * 203.66561 * 18 16 15 42 42 H 1.09001 * 113.61578 * 334.56769 * 18 16 15 43 43 H 0.96996 * 119.99926 * 0.02562 * 22 21 19 44 44 H 0.97000 * 119.99614 * 179.97438 * 22 21 19 45 45 H 1.09005 * 113.61459 * 25.44194 * 24 16 15 46 46 H 1.09007 * 113.61107 * 156.25462 * 24 16 15 47 47 H 1.07997 * 120.04012 * 180.02562 * 25 12 11 48 48 H 1.07998 * 119.84020 * 180.02562 * 26 25 12 49 49 H 1.07996 * 119.80499 * 180.27737 * 27 26 25 50 50 H 1.08002 * 119.96388 * 179.72398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6466 -0.0006 5 6 4.8647 1.5180 -0.0003 6 8 5.4550 1.5093 -1.3017 7 14 4.3904 3.2612 0.4548 8 6 3.6134 -0.7013 0.0043 9 6 4.8196 -1.6047 0.0103 10 7 2.3084 -1.1068 0.0005 11 6 1.8672 -2.4321 0.0018 12 6 1.6453 -3.0993 1.2148 13 6 1.8756 -2.4051 2.4966 14 8 2.2593 -1.2513 2.5029 15 7 1.6606 -3.0500 3.6604 16 6 1.8897 -2.3611 4.9328 17 1 2.5928 -1.5327 4.8451 18 6 0.5947 -1.9961 5.6776 19 6 0.6840 -3.3771 6.3482 20 1 0.1840 -4.1675 5.7883 21 6 0.3093 -3.3649 7.8077 22 7 -0.9875 -3.4176 8.1709 23 8 1.1747 -3.3076 8.6555 24 6 2.2004 -3.3118 6.1009 25 6 1.2047 -4.4244 1.2030 26 6 0.9916 -5.0673 0.0026 27 6 1.2068 -4.4033 -1.1940 28 6 1.6478 -3.0949 -1.1973 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9667 2.1200 0.0004 33 1 5.5814 1.1351 0.7263 34 1 4.8725 1.8380 -2.0000 35 1 3.7464 3.2794 1.7928 36 1 5.5940 4.1307 0.4581 37 1 5.1145 -1.8239 -1.0159 38 1 5.6418 -1.1096 0.5268 39 1 4.5747 -2.5342 0.5243 40 1 1.3548 -3.9705 3.6554 41 1 0.7104 -1.1647 6.3730 42 1 -0.2691 -1.8840 5.0222 43 1 -1.6796 -3.4638 7.4929 44 1 -1.2287 -3.4101 9.1105 45 1 2.6331 -4.2619 5.7873 46 1 2.7564 -2.8405 6.9114 47 1 1.0312 -4.9448 2.1333 48 1 0.6505 -6.0920 -0.0051 49 1 1.0329 -4.9135 -2.1299 50 1 1.8176 -2.5852 -2.1342 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12335856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:18:58 Heat of formation + Delta-G solvation = 7.292886 kcal Electronic energy + Delta-G solvation = -34600.524294 eV Core-core repulsion = 30175.134293 eV Total energy + Delta-G solvation = -4425.390001 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.85199 -41.74874 -40.68861 -39.50506 -38.42649 -37.65466 -34.82822 -34.55461 -34.04013 -33.56621 -32.15868 -30.40314 -30.10352 -27.63019 -27.10273 -26.84301 -25.11357 -24.58645 -23.54974 -22.42461 -21.95144 -20.95415 -20.46359 -20.12836 -19.06408 -18.41983 -17.87523 -17.72076 -17.45965 -17.29863 -16.63717 -16.45528 -16.19396 -15.99061 -15.91806 -15.74789 -15.44580 -15.18756 -14.99355 -14.79735 -14.72173 -14.38658 -14.33609 -14.15810 -13.99213 -13.78340 -13.56641 -13.41484 -13.32432 -13.21992 -13.05957 -12.98989 -12.87580 -12.75479 -12.37796 -12.16186 -11.82297 -11.74648 -11.68977 -11.06964 -10.98479 -10.71278 -10.33922 -10.31642 -10.11161 -10.00333 -9.50176 -8.65274 -4.97928 -0.41084 0.06655 1.22312 1.43039 1.52799 1.70217 1.73626 1.86842 1.93922 1.98610 2.04785 2.57283 2.61613 3.29061 3.36545 3.49788 3.64248 3.69468 3.70352 3.79255 3.84677 3.98200 4.07200 4.16793 4.19726 4.22629 4.26024 4.31708 4.43694 4.46420 4.52131 4.55204 4.62679 4.65705 4.67947 4.71481 4.74500 4.77813 4.80083 4.85277 4.93679 4.98679 5.03100 5.07380 5.20607 5.23854 5.30902 5.44240 5.47676 5.65592 5.83471 6.14527 6.29038 6.39131 6.42079 6.65974 6.88815 7.11048 7.29392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.033 3.967 3 C -0.203 4.203 4 C -0.209 4.209 5 C -0.035 4.035 6 O -0.559 6.559 7 Si 0.790 3.210 8 C 0.050 3.950 9 C -0.072 4.072 10 N -0.392 5.392 11 C 0.144 3.856 12 C -0.145 4.145 13 C 0.548 3.452 14 O -0.546 6.546 15 N -0.693 5.693 16 C 0.123 3.877 17 H 0.079 0.921 18 C -0.124 4.124 19 C -0.125 4.125 20 H 0.151 0.849 21 C 0.520 3.480 22 N -0.838 5.838 23 O -0.596 6.596 24 C -0.121 4.121 25 C -0.073 4.073 26 C -0.107 4.107 27 C -0.076 4.076 28 C -0.122 4.122 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.391 0.609 35 H -0.305 1.305 36 H -0.297 1.297 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.415 0.585 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.418 0.582 44 H 0.404 0.596 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.164 0.836 48 H 0.170 0.830 49 H 0.163 0.837 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 -8.109 -4.986 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.227 4.227 4 C -0.216 4.216 5 C -0.146 4.146 6 O -0.366 6.366 7 Si 0.698 3.302 8 C -0.060 4.060 9 C -0.130 4.130 10 N -0.066 5.066 11 C 0.054 3.946 12 C -0.149 4.149 13 C 0.335 3.665 14 O -0.423 6.423 15 N -0.346 5.346 16 C 0.017 3.983 17 H 0.097 0.903 18 C -0.164 4.164 19 C -0.145 4.145 20 H 0.168 0.832 21 C 0.306 3.694 22 N -0.401 5.401 23 O -0.477 6.477 24 C -0.159 4.159 25 C -0.092 4.092 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.141 4.141 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.171 0.829 33 H 0.103 0.897 34 H 0.241 0.759 35 H -0.233 1.233 36 H -0.225 1.225 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.254 0.746 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.250 0.750 44 H 0.235 0.765 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.181 0.819 48 H 0.188 0.812 49 H 0.181 0.819 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.594 -7.146 -3.694 11.771 hybrid contribution -0.063 -0.672 0.843 1.080 sum -8.656 -7.818 -2.851 12.007 Atomic orbital electron populations 1.20287 0.86991 1.03911 1.02195 1.20538 0.93996 0.84924 1.08168 1.20643 0.91735 0.98093 1.12193 1.19592 0.95037 0.92881 1.14078 1.24368 0.93338 1.08884 0.88029 1.86402 1.44185 1.89037 1.16996 0.93705 0.79976 0.74286 0.82207 1.20184 0.84274 0.94097 1.07483 1.20166 0.93324 0.96974 1.02514 1.41023 1.05156 1.03054 1.57405 1.17838 0.99789 0.83551 0.93435 1.20188 1.06563 0.96470 0.91713 1.18466 0.77430 0.86126 0.84467 1.90925 1.45647 1.18056 1.87683 1.45369 1.68536 1.16952 1.03754 1.21667 0.97899 0.96131 0.82618 0.90288 1.23256 0.99014 0.95425 0.98655 1.22869 0.98796 1.01158 0.91720 0.83190 1.20887 0.82830 0.73982 0.91707 1.43818 1.07358 1.75840 1.13046 1.90754 1.50619 1.51884 1.54433 1.23161 0.95161 1.00889 0.96733 1.21629 0.95399 0.91169 1.01001 1.21694 0.97763 1.01920 0.91048 1.21699 0.94459 0.92643 1.00682 1.21466 0.99932 0.96223 0.96480 0.92107 0.88446 0.91672 0.82861 0.89731 0.75919 1.23282 1.22522 0.90404 0.91236 0.92844 0.74616 0.89798 0.88851 0.75029 0.76468 0.88737 0.89434 0.81864 0.81246 0.81943 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.09 71.24 0.72 0.57 16 2 C 0.03 0.25 6.00 41.02 0.25 0.50 16 3 C -0.20 -1.69 9.27 22.16 0.21 -1.48 16 4 C -0.21 -2.12 5.35 -19.98 -0.11 -2.23 16 5 C -0.04 -0.30 2.60 71.24 0.19 -0.12 16 6 O -0.56 -3.94 12.88 -148.98 -1.92 -5.86 16 7 Si 0.79 4.84 30.81 68.60 2.11 6.95 16 8 C 0.05 0.52 5.99 41.02 0.25 0.76 16 9 C -0.07 -0.57 9.87 71.24 0.70 0.13 16 10 N -0.39 -3.04 1.45 -319.53 -0.46 -3.50 16 11 C 0.14 0.43 4.52 38.50 0.17 0.60 16 12 C -0.15 -0.03 5.89 -19.99 -0.12 -0.14 16 13 C 0.55 2.26 7.77 86.71 0.67 2.93 16 14 O -0.55 -7.33 13.28 -3.99 -0.05 -7.39 16 15 N -0.69 2.18 5.21 -443.16 -2.31 -0.13 16 16 C 0.12 -0.03 4.32 45.52 0.20 0.16 16 17 H 0.08 0.53 7.46 -2.39 -0.02 0.51 16 18 C -0.12 0.40 7.43 31.12 0.23 0.63 16 19 C -0.12 0.67 4.03 -11.02 -0.04 0.63 16 20 H 0.15 -1.92 8.14 -2.38 -0.02 -1.94 16 21 C 0.52 0.46 7.63 87.65 0.67 1.13 16 22 N -0.84 5.30 8.87 -173.53 -1.54 3.76 16 23 O -0.60 -7.18 16.74 -3.04 -0.05 -7.23 16 24 C -0.12 0.19 7.15 31.12 0.22 0.42 16 25 C -0.07 0.59 9.54 22.52 0.21 0.80 16 26 C -0.11 1.09 10.02 22.24 0.22 1.32 16 27 C -0.08 0.60 10.03 22.30 0.22 0.82 16 28 C -0.12 0.23 9.96 22.35 0.22 0.45 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 0.02 7.84 -2.38 -0.02 0.00 16 32 H 0.15 0.58 6.59 -2.91 -0.02 0.56 16 33 H 0.09 0.96 7.49 -2.39 -0.02 0.94 16 34 H 0.39 -0.37 8.70 -74.06 -0.64 -1.02 16 35 H -0.30 -4.14 7.11 99.48 0.71 -3.43 16 36 H -0.30 -3.44 7.11 99.48 0.71 -2.73 16 37 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.07 0.62 7.50 -2.39 -0.02 0.60 16 39 H 0.05 0.40 7.83 -2.39 -0.02 0.38 16 40 H 0.42 -4.38 6.73 -92.71 -0.62 -5.00 16 41 H 0.08 -0.01 8.09 -2.39 -0.02 -0.03 16 42 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.42 -5.48 8.83 -92.71 -0.82 -6.29 16 44 H 0.40 -2.53 8.93 -92.71 -0.83 -3.36 16 45 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 46 H 0.09 0.34 7.44 -2.38 -0.02 0.33 16 47 H 0.16 -2.46 6.40 -2.91 -0.02 -2.48 16 48 H 0.17 -2.77 8.06 -2.91 -0.02 -2.79 16 49 H 0.16 -2.09 8.06 -2.91 -0.02 -2.11 16 50 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 Total: 0.00 -33.24 413.76 -0.99 -34.23 By element: Atomic # 1 Polarization: -26.86 SS G_CDS: -1.85 Total: -28.72 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.09 Total: 7.88 kcal Atomic # 7 Polarization: 4.44 SS G_CDS: -4.31 Total: 0.12 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -2.02 Total: -20.47 kcal Atomic # 14 Polarization: 4.84 SS G_CDS: 2.11 Total: 6.95 kcal Total: -33.24 -0.99 -34.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12335856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.522 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds