Wall clock time and date at job start Thu Mar 4 2021 13:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34853 * 125.89767 * 2 1 4 4 C 1.40949 * 107.46748 * 180.23810 * 3 2 1 5 5 C 1.50700 * 126.26456 * 179.75726 * 4 3 2 6 6 O 1.42899 * 109.46877 * 254.99904 * 5 4 3 7 7 Si 1.86293 * 109.47283 * 15.00412 * 5 4 3 8 8 C 1.34851 * 107.46657 * 359.75781 * 4 3 2 9 9 C 1.50697 * 125.90065 * 179.97438 * 8 4 3 10 10 N 1.36568 * 108.20023 * 0.02562 * 8 4 3 11 11 C 1.40200 * 125.67294 * 179.97438 * 10 8 4 12 12 C 1.38826 * 120.06955 * 114.99478 * 11 10 8 13 13 C 1.38121 * 119.93659 * 179.97438 * 12 11 10 14 14 C 1.38274 * 120.06464 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.93322 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47165 * 90.00646 * 15 14 13 17 17 O 1.21281 * 119.99835 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.46506 * 119.99831 * 179.97438 * 18 16 15 20 20 H 1.08997 * 112.85420 * 23.80069 * 19 18 16 21 21 C 1.53781 * 113.61405 * 154.99784 * 19 18 16 22 22 C 1.53786 * 87.17350 * 140.02258 * 21 19 18 23 23 H 1.09000 * 113.61138 * 220.06261 * 22 21 19 24 24 C 1.50697 * 113.61613 * 89.15662 * 22 21 19 25 25 N 1.34774 * 119.99787 * 180.02562 * 24 22 21 26 26 O 1.21277 * 120.00025 * 0.02562 * 24 22 21 27 27 C 1.53782 * 113.68817 * 252.53351 * 19 18 16 28 28 C 1.38274 * 120.13109 * 0.28131 * 14 13 12 29 29 C 1.38124 * 120.06815 * 359.44510 * 28 14 13 30 30 H 1.09003 * 109.47252 * 270.17418 * 1 2 3 31 31 H 1.08999 * 109.47121 * 30.17646 * 1 2 3 32 32 H 1.09002 * 109.47023 * 150.17769 * 1 2 3 33 33 H 1.08002 * 126.26609 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.46523 * 135.00308 * 5 4 3 35 35 H 0.96700 * 114.00114 * 60.00501 * 6 5 4 36 36 H 1.48499 * 110.00030 * 179.97438 * 7 5 4 37 37 H 1.48503 * 109.99893 * 301.31621 * 7 5 4 38 38 H 1.09002 * 109.47175 * 270.02430 * 9 8 4 39 39 H 1.08992 * 109.47304 * 30.02405 * 9 8 4 40 40 H 1.08992 * 109.47109 * 150.02914 * 9 8 4 41 41 H 1.08005 * 120.03085 * 0.02562 * 12 11 10 42 42 H 1.08000 * 119.96255 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.47164 * 330.00465 * 15 14 13 44 44 H 1.09005 * 109.47203 * 210.00621 * 15 14 13 45 45 H 0.96990 * 120.00286 * 359.97438 * 18 16 15 46 46 H 1.09002 * 113.61445 * 254.61257 * 21 19 18 47 47 H 1.09002 * 113.61408 * 25.42988 * 21 19 18 48 48 H 0.96998 * 120.00410 * 359.97438 * 25 24 22 49 49 H 0.96999 * 119.99773 * 180.02562 * 25 24 22 50 50 H 1.08997 * 113.61668 * 334.55345 * 27 19 18 51 51 H 1.08998 * 113.61674 * 105.37854 * 27 19 18 52 52 H 1.08003 * 119.96690 * 179.70073 * 28 14 13 53 53 H 1.08001 * 120.03556 * 180.27465 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6468 -0.0056 5 6 4.8647 1.5177 -0.0128 6 8 5.4487 1.5064 -1.3169 7 14 4.3931 3.2619 0.4414 8 6 3.6122 -0.7015 -0.0034 9 6 4.8178 -1.6056 -0.0082 10 7 2.3078 -1.1062 0.0028 11 6 1.8645 -2.4363 0.0063 12 6 1.1677 -2.9343 1.0989 13 6 0.7317 -4.2449 1.0992 14 6 0.9882 -5.0605 0.0124 15 6 0.5106 -6.4898 0.0156 16 6 -0.8726 -6.5586 -0.5783 17 8 -1.4172 -5.5466 -0.9656 18 7 -1.5049 -7.7447 -0.6781 19 6 -2.8500 -7.8114 -1.2550 20 1 -3.0672 -6.9757 -1.9201 21 6 -3.1945 -9.1837 -1.8574 22 6 -4.6008 -9.0077 -1.2605 23 1 -5.0120 -9.9228 -0.8345 24 6 -5.5642 -8.3052 -2.1822 25 7 -6.8335 -8.0827 -1.7876 26 8 -5.1972 -7.9401 -3.2790 27 6 -3.9544 -8.0769 -0.2184 28 6 1.6865 -4.5688 -1.0750 29 6 2.1202 -3.2574 -1.0835 30 1 -0.3634 0.0031 1.0277 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5111 33 1 1.9668 2.1205 -0.0004 34 1 5.5845 1.1358 0.7111 35 1 4.8630 1.8340 -2.0131 36 1 5.5974 4.1307 0.4385 37 1 3.3881 3.7829 -0.5197 38 1 5.1035 -1.8248 -1.0370 39 1 5.6449 -1.1109 0.5010 40 1 4.5771 -2.5349 0.5079 41 1 0.9660 -2.2974 1.9475 42 1 0.1900 -4.6330 1.9491 43 1 0.4853 -6.8621 1.0398 44 1 1.1912 -7.1017 -0.5766 45 1 -1.0696 -8.5540 -0.3681 46 1 -3.1813 -9.1980 -2.9472 47 1 -2.6330 -10.0075 -1.4165 48 1 -7.1271 -8.3750 -0.9106 49 1 -7.4537 -7.6308 -2.3810 50 1 -3.6018 -8.5982 0.6715 51 1 -4.5538 -7.1972 0.0160 52 1 1.8896 -5.2096 -1.9203 53 1 2.6617 -2.8726 -1.9350 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12335864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:02 Heat of formation + Delta-G solvation = -11.009012 kcal Electronic energy + Delta-G solvation = -34602.917169 eV Core-core repulsion = 30021.195919 eV Total energy + Delta-G solvation = -4581.721250 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.188 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.85850 -41.75378 -40.80895 -39.76005 -38.32225 -37.83671 -34.90956 -34.78187 -34.33568 -33.71715 -32.10401 -32.03940 -30.16415 -28.78079 -27.22313 -26.72770 -26.38220 -24.58314 -23.96582 -23.38107 -22.61471 -21.56129 -20.99691 -20.35673 -20.28435 -18.31096 -18.15394 -18.07044 -17.96092 -17.59887 -17.27514 -17.18528 -16.53065 -16.29419 -15.97024 -15.75662 -15.68603 -15.57421 -15.42753 -15.08274 -14.95693 -14.60761 -14.56597 -14.32316 -14.26456 -14.12438 -14.02682 -13.60867 -13.50507 -13.43855 -13.32302 -13.25675 -13.11824 -13.06347 -12.82227 -12.77107 -12.58552 -12.18902 -12.06185 -11.82934 -11.70195 -11.64999 -11.05737 -10.95601 -10.71004 -10.50892 -10.12858 -10.08835 -10.04913 -9.40773 -8.84817 -4.85330 -0.06715 0.26229 1.12528 1.42379 1.53057 1.62046 1.66936 1.75494 1.82724 2.02397 2.14964 2.54128 2.64699 3.40493 3.44487 3.55827 3.57776 3.70907 3.72916 3.75650 3.83368 3.89684 3.97116 4.00168 4.11702 4.21949 4.26781 4.29106 4.32365 4.41113 4.52108 4.56282 4.57044 4.58210 4.63269 4.66508 4.70391 4.71485 4.76358 4.81981 4.87354 4.90981 4.98421 4.99786 5.01340 5.08244 5.13401 5.16587 5.26812 5.34988 5.43844 5.54772 5.73198 5.83163 5.97946 6.16303 6.42554 6.49540 6.56161 6.57988 7.28987 7.30383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.013 3.987 3 C -0.200 4.200 4 C -0.203 4.203 5 C -0.046 4.046 6 O -0.551 6.551 7 Si 0.775 3.225 8 C 0.038 3.962 9 C -0.078 4.078 10 N -0.402 5.402 11 C 0.099 3.901 12 C -0.113 4.113 13 C -0.094 4.094 14 C -0.061 4.061 15 C -0.098 4.098 16 C 0.511 3.489 17 O -0.585 6.585 18 N -0.704 5.704 19 C 0.111 3.889 20 H 0.070 0.930 21 C -0.120 4.120 22 C -0.133 4.133 23 H 0.147 0.853 24 C 0.521 3.479 25 N -0.837 5.837 26 O -0.596 6.596 27 C -0.120 4.120 28 C -0.100 4.100 29 C -0.119 4.119 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.381 0.619 36 H -0.302 1.302 37 H -0.289 1.289 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.422 0.578 46 H 0.061 0.939 47 H 0.132 0.868 48 H 0.419 0.581 49 H 0.405 0.595 50 H 0.130 0.870 51 H 0.064 0.936 52 H 0.142 0.858 53 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 -10.312 8.860 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.223 4.223 4 C -0.209 4.209 5 C -0.155 4.155 6 O -0.359 6.359 7 Si 0.681 3.319 8 C -0.072 4.072 9 C -0.135 4.135 10 N -0.077 5.077 11 C 0.010 3.990 12 C -0.132 4.132 13 C -0.113 4.113 14 C -0.062 4.062 15 C -0.137 4.137 16 C 0.298 3.702 17 O -0.465 6.465 18 N -0.357 5.357 19 C 0.005 3.995 20 H 0.088 0.912 21 C -0.159 4.159 22 C -0.154 4.154 23 H 0.165 0.835 24 C 0.306 3.694 25 N -0.400 5.400 26 O -0.477 6.477 27 C -0.159 4.159 28 C -0.118 4.118 29 C -0.138 4.138 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.133 0.867 35 H 0.230 0.770 36 H -0.231 1.231 37 H -0.216 1.216 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.150 0.850 48 H 0.251 0.749 49 H 0.236 0.764 50 H 0.148 0.852 51 H 0.083 0.917 52 H 0.160 0.840 53 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.184 -9.174 8.035 12.604 hybrid contribution -0.491 0.004 -1.550 1.626 sum -3.675 -9.170 6.485 11.817 Atomic orbital electron populations 1.20341 0.86982 1.03126 1.03430 1.20745 0.94306 0.85133 1.09351 1.20770 0.92027 0.98083 1.11441 1.19670 0.95014 0.92755 1.13502 1.24464 0.94575 1.09457 0.87035 1.86526 1.44588 1.87279 1.17514 0.93844 0.76956 0.71912 0.89237 1.20587 0.84472 0.94417 1.07701 1.20289 0.93020 0.97455 1.02741 1.41560 1.05594 1.03452 1.57064 1.17822 1.01954 0.83106 0.96102 1.21247 0.98433 0.96569 0.96958 1.21177 0.98449 0.92460 0.99193 1.19672 0.96509 0.96115 0.93903 1.20800 0.92638 0.94099 1.06128 1.21127 0.88219 0.83109 0.77701 1.90760 1.69004 1.36460 1.50264 1.45835 1.17083 1.09921 1.62842 1.22466 0.82338 0.98625 0.96038 0.91169 1.23266 0.94212 0.96972 1.01407 1.22275 0.94614 1.01539 0.96997 0.83537 1.20748 0.83835 0.77988 0.86801 1.43762 1.11732 1.61923 1.22603 1.90759 1.78478 1.53663 1.24771 1.23426 0.95900 0.99009 0.97559 1.21131 0.97468 0.94662 0.98558 1.21187 1.01138 0.94580 0.96934 0.89753 0.89144 0.92983 0.83194 0.86707 0.77022 1.23054 1.21568 0.91164 0.89398 0.91627 0.84903 0.83101 0.84081 0.84829 0.73972 0.92010 0.85013 0.74900 0.76448 0.85231 0.91715 0.83986 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 9.95 71.23 0.71 0.41 16 2 C 0.01 0.10 6.81 41.04 0.28 0.38 16 3 C -0.20 -1.34 9.27 22.16 0.21 -1.14 16 4 C -0.20 -1.41 5.35 -19.98 -0.11 -1.52 16 5 C -0.05 -0.22 2.60 71.24 0.19 -0.04 16 6 O -0.55 -4.16 12.88 -148.98 -1.92 -6.08 16 7 Si 0.77 2.31 30.86 68.60 2.12 4.43 16 8 C 0.04 0.29 6.81 41.04 0.28 0.57 16 9 C -0.08 -0.30 9.72 71.23 0.69 0.39 16 10 N -0.40 -3.13 2.79 -320.26 -0.89 -4.02 16 11 C 0.10 0.61 4.65 38.08 0.18 0.79 16 12 C -0.11 -0.38 9.74 22.38 0.22 -0.16 16 13 C -0.09 -0.02 9.69 22.25 0.22 0.20 16 14 C -0.06 0.02 4.37 -19.85 -0.09 -0.07 16 15 C -0.10 0.70 5.83 29.10 0.17 0.87 16 16 C 0.51 0.20 7.82 87.65 0.69 0.89 16 17 O -0.59 -7.21 15.63 -3.03 -0.05 -7.26 16 18 N -0.70 3.70 5.36 -440.03 -2.36 1.34 16 19 C 0.11 -0.07 3.89 45.52 0.18 0.11 16 20 H 0.07 0.71 7.40 -2.39 -0.02 0.70 16 21 C -0.12 0.53 7.20 31.12 0.22 0.75 16 22 C -0.13 0.79 4.35 -10.95 -0.05 0.74 16 23 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 24 C 0.52 1.04 7.36 87.66 0.65 1.69 16 25 N -0.84 4.32 8.87 -173.54 -1.54 2.78 16 26 O -0.60 -8.02 16.59 -3.02 -0.05 -8.07 16 27 C -0.12 0.77 7.46 31.18 0.23 1.00 16 28 C -0.10 -0.21 9.69 22.25 0.22 0.01 16 29 C -0.12 -0.63 9.73 22.38 0.22 -0.41 16 30 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.05 0.33 7.83 -2.39 -0.02 0.31 16 33 H 0.15 0.60 6.52 -2.91 -0.02 0.58 16 34 H 0.12 0.34 7.50 -2.39 -0.02 0.32 16 35 H 0.38 1.17 8.70 -74.06 -0.64 0.53 16 36 H -0.30 -2.86 7.11 99.48 0.71 -2.15 16 37 H -0.29 -2.11 7.01 99.48 0.70 -1.41 16 38 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 0.20 7.50 -2.39 -0.02 0.18 16 40 H 0.06 0.19 7.83 -2.39 -0.02 0.17 16 41 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 43 H 0.14 -1.92 8.08 -2.39 -0.02 -1.94 16 44 H 0.13 -1.62 8.08 -2.38 -0.02 -1.64 16 45 H 0.42 -5.70 8.73 -92.72 -0.81 -6.51 16 46 H 0.06 0.15 7.43 -2.39 -0.02 0.13 16 47 H 0.13 -1.55 8.12 -2.39 -0.02 -1.57 16 48 H 0.42 -5.16 8.83 -92.71 -0.82 -5.97 16 49 H 0.40 -2.00 8.93 -92.71 -0.83 -2.83 16 50 H 0.13 -1.60 8.14 -2.39 -0.02 -1.61 16 51 H 0.06 -0.21 8.10 -2.39 -0.02 -0.23 16 52 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 53 H 0.12 0.68 8.06 -2.91 -0.02 0.66 16 Total: 0.00 -34.44 441.97 -1.49 -35.93 By element: Atomic # 1 Polarization: -22.44 SS G_CDS: -2.09 Total: -24.53 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.29 Total: 5.47 kcal Atomic # 7 Polarization: 4.90 SS G_CDS: -4.79 Total: 0.10 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -2.02 Total: -21.41 kcal Atomic # 14 Polarization: 2.31 SS G_CDS: 2.12 Total: 4.43 kcal Total: -34.44 -1.49 -35.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12335864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.922 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds