Wall clock time and date at job start Thu Mar 4 2021 13:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46913 * 2 1 4 4 C 1.53002 * 109.46819 * 173.81235 * 3 2 1 5 5 C 1.52993 * 109.47233 * 293.81179 * 3 2 1 6 6 C 1.50697 * 109.47286 * 180.54496 * 5 3 2 7 7 O 1.21287 * 120.00311 * 118.15715 * 6 5 3 8 8 N 1.34783 * 120.00020 * 298.15236 * 6 5 3 9 9 C 1.46492 * 119.99961 * 175.57957 * 8 6 5 10 10 H 1.08997 * 112.85459 * 336.19828 * 9 8 6 11 11 C 1.53778 * 113.61696 * 107.50739 * 9 8 6 12 12 C 1.53782 * 87.08364 * 89.11184 * 11 9 8 13 13 H 1.08998 * 113.61280 * 270.88781 * 12 11 9 14 14 C 1.50702 * 113.69137 * 139.99104 * 12 11 9 15 15 N 1.34779 * 119.99674 * 82.46517 * 14 12 11 16 16 O 1.21270 * 120.00263 * 262.47054 * 14 12 11 17 17 C 1.53779 * 87.07900 * 25.43296 * 12 11 9 18 18 N 1.46503 * 109.47307 * 300.54633 * 5 3 2 19 19 C 1.36349 * 125.63239 * 294.93841 * 18 5 3 20 20 C 1.34854 * 108.21329 * 180.26471 * 19 18 5 21 21 C 1.40890 * 107.41931 * 359.73492 * 20 19 18 22 22 C 1.34852 * 107.41770 * 0.02562 * 21 20 19 23 23 C 1.50697 * 125.88685 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.46628 * 210.01997 * 23 22 21 25 25 Si 1.86294 * 109.47394 * 330.02131 * 23 22 21 26 26 H 1.08998 * 109.46955 * 185.00331 * 1 2 3 27 27 H 1.08998 * 109.46943 * 304.99687 * 1 2 3 28 28 H 1.08996 * 109.47120 * 64.99647 * 1 2 3 29 29 H 1.09004 * 109.47452 * 240.00467 * 2 1 3 30 30 H 1.08997 * 109.47756 * 120.00062 * 2 1 3 31 31 H 1.08999 * 109.46976 * 53.81570 * 3 2 1 32 32 H 1.09001 * 109.46689 * 171.40614 * 4 3 2 33 33 H 1.08995 * 109.47475 * 291.40163 * 4 3 2 34 34 H 1.09001 * 109.47447 * 51.40613 * 4 3 2 35 35 H 1.09005 * 109.47071 * 60.54283 * 5 3 2 36 36 H 0.96996 * 119.99377 * 355.58140 * 8 6 5 37 37 H 1.08996 * 113.61617 * 203.66338 * 11 9 8 38 38 H 1.09004 * 113.61519 * 334.56582 * 11 9 8 39 39 H 0.97003 * 119.99693 * 0.02562 * 15 14 12 40 40 H 0.96997 * 120.00197 * 179.97438 * 15 14 12 41 41 H 1.08997 * 113.61578 * 220.01672 * 17 12 11 42 42 H 1.09008 * 113.68919 * 89.12475 * 17 12 11 43 43 H 1.08000 * 125.89033 * 359.97438 * 19 18 5 44 44 H 1.08000 * 126.28474 * 179.75622 * 20 19 18 45 45 H 1.08003 * 126.28920 * 180.02562 * 21 20 19 46 46 H 1.09002 * 109.47295 * 90.02711 * 23 22 21 47 47 H 0.96708 * 113.99755 * 179.97438 * 24 23 22 48 48 H 1.48496 * 110.00215 * 178.68292 * 25 23 22 49 49 H 1.48502 * 110.00104 * 300.00476 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5621 1.4454 0.1555 5 6 1.6609 2.1175 -1.3196 6 6 2.1748 3.5342 -1.3251 7 8 2.9865 3.8817 -2.1567 8 7 1.7324 4.4151 -0.4060 9 6 2.3024 5.7634 -0.3498 10 1 3.3039 5.8177 -0.7764 11 6 1.3513 6.8563 -0.8651 12 6 0.8205 6.9630 0.5742 13 1 -0.0087 6.2877 0.7850 14 6 0.5499 8.3780 1.0165 15 7 -0.6103 8.9778 0.6838 16 8 1.3760 8.9771 1.6717 17 6 2.1856 6.4244 1.0338 18 7 2.2563 1.3778 -2.4352 19 6 3.5913 1.2493 -2.6807 20 6 3.7454 0.5052 -3.7947 21 6 2.4586 0.1565 -4.2503 22 6 1.5671 0.7013 -3.3977 23 6 0.0677 0.5864 -3.4948 24 8 -0.5366 1.7551 -2.9371 25 14 -0.4282 0.4240 -5.2832 26 1 -0.3633 -1.0237 0.0896 27 1 -0.3633 0.5894 0.8418 28 1 -0.3633 0.4344 -0.9313 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 1.5891 1.9873 0.8294 32 1 3.9409 2.4560 0.0032 33 1 3.8257 1.1057 1.1570 34 1 4.0040 0.7765 -0.5831 35 1 0.5761 2.1241 -1.4259 36 1 1.0366 4.1562 0.2183 37 1 1.8639 7.7546 -1.2092 38 1 0.6114 6.4910 -1.5774 39 1 -1.2712 8.4985 0.1599 40 1 -0.7847 9.8884 0.9687 41 1 2.1194 5.7103 1.8546 42 1 2.9273 7.2036 1.2094 43 1 4.3878 1.6745 -2.0881 44 1 4.6829 0.2273 -4.2532 45 1 2.2284 -0.4379 -5.1223 46 1 -0.2658 -0.2931 -2.9440 47 1 -1.5033 1.7500 -2.9662 48 1 -1.9021 0.2780 -5.3904 49 1 0.0207 1.6170 -6.0451 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12360566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:11 Heat of formation + Delta-G solvation = -29.525605 kcal Electronic energy + Delta-G solvation = -31405.464976 eV Core-core repulsion = 27335.845349 eV Total energy + Delta-G solvation = -4069.619628 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.83486 -41.65132 -40.40550 -38.65671 -37.93172 -37.57002 -34.73931 -34.27052 -32.93297 -31.56901 -30.62028 -28.58825 -26.99262 -26.83563 -25.91332 -24.62410 -22.74994 -22.18369 -21.66887 -21.47639 -20.37983 -19.93899 -18.88288 -18.47053 -18.31600 -17.81201 -17.58512 -16.90479 -16.80948 -16.46678 -16.07247 -15.82981 -15.47474 -15.33743 -15.04261 -14.70717 -14.63796 -14.59638 -14.36354 -14.27833 -13.76901 -13.72343 -13.60502 -13.38958 -13.27090 -13.09218 -12.97221 -12.80606 -12.67604 -12.20236 -12.01769 -11.88310 -11.84642 -11.76724 -11.68802 -11.55933 -11.09299 -10.98776 -10.71601 -10.65382 -10.23300 -9.46656 -8.77802 -4.86490 1.02217 1.35676 1.48667 1.53358 1.63477 1.77141 2.01896 2.16982 2.28131 2.57694 3.10750 3.29482 3.36359 3.38662 3.56230 3.67123 3.76542 3.82364 3.85567 4.01874 4.20477 4.27154 4.31863 4.36188 4.48324 4.50500 4.50939 4.62564 4.63413 4.68442 4.69717 4.77804 4.78801 4.82159 4.85989 4.89486 4.99833 5.02196 5.18595 5.20701 5.30808 5.38303 5.42937 5.46096 5.46790 5.83104 6.11619 6.26838 6.35324 6.41115 6.50974 6.57799 7.04563 7.28812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.163 4.163 5 C 0.113 3.887 6 C 0.510 3.490 7 O -0.565 6.565 8 N -0.691 5.691 9 C 0.121 3.879 10 H 0.083 0.917 11 C -0.128 4.128 12 C -0.126 4.126 13 H 0.149 0.851 14 C 0.520 3.480 15 N -0.839 5.839 16 O -0.595 6.595 17 C -0.118 4.118 18 N -0.411 5.411 19 C 0.004 3.996 20 C -0.223 4.223 21 C -0.205 4.205 22 C 0.015 3.985 23 C -0.046 4.046 24 O -0.555 6.555 25 Si 0.775 3.225 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.164 0.836 36 H 0.418 0.582 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.418 0.582 40 H 0.404 0.596 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.153 0.847 44 H 0.141 0.859 45 H 0.163 0.837 46 H 0.106 0.894 47 H 0.401 0.599 48 H -0.271 1.271 49 H -0.320 1.320 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 -5.204 2.683 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C -0.109 4.109 4 C -0.220 4.220 5 C 0.007 3.993 6 C 0.296 3.704 7 O -0.442 6.442 8 N -0.344 5.344 9 C 0.015 3.985 10 H 0.101 0.899 11 C -0.167 4.167 12 C -0.147 4.147 13 H 0.167 0.833 14 C 0.306 3.694 15 N -0.402 5.402 16 O -0.475 6.475 17 C -0.156 4.156 18 N -0.086 5.086 19 C -0.127 4.127 20 C -0.247 4.247 21 C -0.229 4.229 22 C -0.096 4.096 23 C -0.156 4.156 24 O -0.366 6.366 25 Si 0.680 3.320 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.181 0.819 36 H 0.256 0.744 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.249 0.751 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.171 0.829 44 H 0.159 0.841 45 H 0.180 0.820 46 H 0.123 0.877 47 H 0.253 0.747 48 H -0.197 1.197 49 H -0.248 1.248 Dipole moment (debyes) X Y Z Total from point charges -7.596 -4.067 2.226 8.899 hybrid contribution -0.846 1.233 0.578 1.603 sum -8.442 -2.833 2.804 9.335 Atomic orbital electron populations 1.21929 0.94431 1.02564 1.02733 1.21509 0.97096 0.94273 1.02384 1.21583 0.96992 0.98115 0.94183 1.22179 0.95291 1.01305 1.03260 1.21918 1.02601 0.87214 0.87532 1.21003 0.80973 0.87931 0.80483 1.90778 1.35164 1.79778 1.38505 1.45394 1.41704 1.11691 1.35601 1.21715 0.97602 0.81319 0.97822 0.89906 1.23277 0.99441 0.99130 0.94897 1.22879 1.00691 0.93288 0.97839 0.83348 1.20886 0.81247 0.89375 0.77877 1.43832 1.19485 1.19421 1.57422 1.90748 1.47585 1.67592 1.41623 1.23151 0.96168 0.99961 0.96321 1.43482 1.05253 1.38972 1.20906 1.21849 0.85476 1.04471 1.00858 1.21053 0.98512 1.06309 0.98873 1.20820 0.91979 1.07955 1.02162 1.20040 0.92652 1.03587 0.93365 1.24482 0.88843 0.90719 1.11518 1.86350 1.26859 1.41734 1.81697 0.93502 0.78547 0.86349 0.73573 0.92312 0.91379 0.91873 0.92830 0.90900 0.86896 0.94006 0.90700 0.92007 0.81886 0.74384 0.89697 0.89345 0.75097 0.76471 0.88413 0.89198 0.82936 0.84149 0.81973 0.87658 0.74694 1.19666 1.24840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.20 9.57 71.98 0.69 1.89 16 2 C -0.11 0.50 5.31 30.60 0.16 0.66 16 3 C -0.09 0.37 2.19 -10.79 -0.02 0.35 16 4 C -0.16 0.11 7.71 71.98 0.56 0.66 16 5 C 0.11 -0.01 2.18 44.24 0.10 0.08 16 6 C 0.51 1.90 5.67 87.65 0.50 2.40 16 7 O -0.56 -7.87 14.78 -3.05 -0.05 -7.92 16 8 N -0.69 2.48 5.15 -440.05 -2.26 0.21 16 9 C 0.12 -0.11 4.30 45.52 0.20 0.09 16 10 H 0.08 0.42 7.52 -2.39 -0.02 0.40 16 11 C -0.13 0.36 7.43 31.12 0.23 0.59 16 12 C -0.13 0.67 4.02 -11.01 -0.04 0.62 16 13 H 0.15 -1.83 8.14 -2.39 -0.02 -1.85 16 14 C 0.52 0.49 7.63 87.66 0.67 1.16 16 15 N -0.84 5.01 8.87 -173.54 -1.54 3.47 16 16 O -0.59 -6.99 16.74 -3.00 -0.05 -7.04 16 17 C -0.12 0.30 7.15 31.12 0.22 0.52 16 18 N -0.41 -2.05 1.62 -491.51 -0.80 -2.85 16 19 C 0.00 0.03 7.47 83.21 0.62 0.65 16 20 C -0.22 -1.78 10.86 22.14 0.24 -1.54 16 21 C -0.20 -1.04 9.43 22.14 0.21 -0.83 16 22 C 0.01 0.06 5.94 41.08 0.24 0.30 16 23 C -0.05 0.13 2.28 71.24 0.16 0.30 16 24 O -0.55 2.39 8.91 -148.98 -1.33 1.07 16 25 Si 0.78 -1.55 31.14 68.60 2.14 0.59 16 26 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.07 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.06 -0.49 4.48 -2.39 -0.01 -0.50 16 29 H 0.05 0.01 7.18 -2.39 -0.02 -0.01 16 30 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.11 -1.04 7.81 -2.39 -0.02 -1.06 16 32 H 0.04 0.11 6.87 -2.39 -0.02 0.09 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.14 5.40 -2.39 -0.01 0.13 16 35 H 0.16 -0.52 3.76 -2.38 -0.01 -0.52 16 36 H 0.42 -4.48 8.41 -92.71 -0.78 -5.26 16 37 H 0.08 0.01 8.10 -2.39 -0.02 -0.01 16 38 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 39 H 0.42 -5.22 8.83 -92.71 -0.82 -6.04 16 40 H 0.40 -2.43 8.93 -92.71 -0.83 -3.26 16 41 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.09 0.24 7.44 -2.38 -0.02 0.22 16 43 H 0.15 1.33 6.32 -2.91 -0.02 1.31 16 44 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.16 -0.08 6.89 -2.91 -0.02 -0.10 16 46 H 0.11 -0.83 7.33 -2.39 -0.02 -0.85 16 47 H 0.40 -5.20 8.74 -74.05 -0.65 -5.85 16 48 H -0.27 0.11 7.11 99.48 0.71 0.82 16 49 H -0.32 -3.00 7.11 99.48 0.71 -2.29 16 Total: 0.00 -29.89 379.59 -1.18 -31.06 By element: Atomic # 1 Polarization: -24.48 SS G_CDS: -2.01 Total: -26.49 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.73 Total: 7.89 kcal Atomic # 7 Polarization: 5.44 SS G_CDS: -4.60 Total: 0.84 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.42 Total: -13.89 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.14 Total: 0.59 kcal Total: -29.89 -1.18 -31.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12360566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.539 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds