Wall clock time and date at job start Thu Mar 4 2021 13:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21279 * 120.00714 * 2 1 4 4 C 1.50701 * 119.99722 * 179.97438 * 2 1 3 5 5 H 1.08997 * 112.90814 * 311.25103 * 4 2 1 6 6 C 1.53779 * 113.61578 * 82.50721 * 4 2 1 7 7 C 1.53779 * 87.08402 * 89.11519 * 6 4 2 8 8 H 1.09002 * 113.61557 * 270.88569 * 7 6 4 9 9 N 1.46497 * 113.61581 * 139.98450 * 7 6 4 10 10 C 1.34769 * 120.00274 * 107.50145 * 9 7 6 11 11 O 1.21694 * 120.00345 * 0.02562 * 10 9 7 12 12 C 1.46433 * 120.00245 * 179.97438 * 10 9 7 13 13 C 1.34802 * 120.00118 * 180.02562 * 12 10 9 14 14 C 1.47218 * 119.99979 * 180.02562 * 13 12 10 15 15 C 1.39834 * 120.16446 * 359.71851 * 14 13 12 16 16 C 1.37897 * 119.81890 * 179.77084 * 15 14 13 17 17 C 1.38404 * 120.17369 * 0.52997 * 16 15 14 18 18 C 1.50694 * 119.82755 * 179.72265 * 17 16 15 19 19 O 1.42908 * 109.46914 * 244.97931 * 18 17 16 20 20 Si 1.86302 * 109.47324 * 4.97913 * 18 17 16 21 21 C 1.38404 * 120.34194 * 359.70215 * 17 16 15 22 22 C 1.37893 * 120.17256 * 0.04439 * 21 17 16 23 23 C 1.53784 * 87.08045 * 25.43458 * 7 6 4 24 24 H 0.96999 * 120.00166 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99932 * 0.02562 * 1 2 3 26 26 H 1.09006 * 113.61280 * 203.66343 * 6 4 2 27 27 H 1.08999 * 113.61062 * 334.48097 * 6 4 2 28 28 H 0.97009 * 119.99534 * 287.50156 * 9 7 6 29 29 H 1.08003 * 119.99674 * 0.02562 * 12 10 9 30 30 H 1.07995 * 120.00328 * 359.97438 * 13 12 10 31 31 H 1.07992 * 120.09026 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.91011 * 180.25982 * 16 15 14 33 33 H 1.08995 * 109.47170 * 124.98171 * 18 17 16 34 34 H 0.96698 * 114.00114 * 180.02562 * 19 18 17 35 35 H 1.48497 * 109.99880 * 300.00049 * 20 18 17 36 36 H 1.48501 * 109.99660 * 61.31995 * 20 18 17 37 37 H 1.07995 * 119.91461 * 180.02562 * 21 17 16 38 38 H 1.07996 * 120.08902 * 180.02562 * 22 21 17 39 39 H 1.09004 * 113.61451 * 220.02152 * 23 7 6 40 40 H 1.08994 * 113.61477 * 89.11454 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9543 1.0502 0.0000 4 6 2.1012 -1.3051 0.0006 5 1 1.7400 -2.0032 0.7557 6 6 2.2500 -1.9312 -1.3961 7 6 3.5491 -1.1200 -1.5351 8 1 3.4000 -0.1254 -1.9553 9 7 4.6345 -1.8574 -2.1864 10 6 5.0036 -1.5423 -3.4437 11 8 4.4355 -0.6450 -4.0379 12 6 6.0890 -2.2790 -4.0946 13 6 6.4584 -1.9635 -5.3520 14 6 7.5492 -2.7045 -6.0065 15 6 8.2083 -3.7323 -5.3249 16 6 9.2259 -4.4249 -5.9465 17 6 9.6026 -4.0978 -7.2375 18 6 10.7199 -4.8556 -7.9071 19 8 11.8175 -3.9725 -8.1470 20 14 11.2742 -6.2494 -6.8022 21 6 8.9583 -3.0785 -7.9169 22 6 7.9354 -2.3801 -7.3108 23 6 3.6295 -1.1342 0.0006 24 1 -0.4850 -0.8400 -0.0004 25 1 -0.4850 0.8401 -0.0004 26 1 2.4086 -3.0095 -1.3766 27 1 1.4692 -1.6306 -2.0947 28 1 5.0877 -2.5724 -1.7126 29 1 6.5934 -3.0751 -3.5671 30 1 5.9537 -1.1677 -5.8796 31 1 7.9185 -3.9857 -4.3160 32 1 9.7331 -5.2217 -5.4230 33 1 10.3665 -5.2617 -8.8548 34 1 12.5743 -4.3935 -8.5773 35 1 11.7585 -5.7088 -5.5067 36 1 10.1502 -7.1920 -6.5710 37 1 9.2576 -2.8293 -8.9241 38 1 7.4332 -1.5853 -7.8423 39 1 3.9631 -0.1891 0.4291 40 1 4.1651 -1.9945 0.4018 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:15 Heat of formation + Delta-G solvation = -41.500828 kcal Electronic energy + Delta-G solvation = -22962.181786 eV Core-core repulsion = 19323.166979 eV Total energy + Delta-G solvation = -3639.014807 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78962 -40.83025 -40.35967 -38.43615 -37.71394 -35.23927 -34.82257 -34.39528 -32.36853 -31.42655 -27.86521 -26.77863 -26.56914 -24.27919 -23.99289 -22.72135 -22.00770 -20.81427 -20.09144 -18.76981 -18.39231 -18.24859 -18.05934 -17.46821 -17.20141 -16.74218 -16.33046 -16.13755 -15.86614 -15.61718 -15.35829 -15.20528 -14.97449 -14.43333 -14.32235 -14.09658 -13.86277 -13.63604 -13.58135 -13.34815 -13.06973 -13.06108 -12.38604 -12.06131 -11.96597 -11.88475 -11.70245 -11.43441 -11.14624 -11.01331 -10.72347 -10.31097 -10.16900 -10.13270 -9.35373 -4.93453 -0.66936 0.22777 0.76890 1.29663 1.51318 1.64768 1.95850 2.10674 2.14591 2.51755 2.66418 3.34800 3.36996 3.40461 3.47003 3.62445 3.71936 3.73452 3.86217 3.89065 4.05754 4.09970 4.20062 4.24864 4.30309 4.47732 4.51845 4.65811 4.69829 4.76718 4.82713 4.84401 4.95156 4.97120 5.03442 5.07759 5.25616 5.34047 5.45927 5.48177 5.75315 5.82134 6.40843 6.48509 6.88725 7.15518 7.28607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.521 3.479 3 O -0.595 6.595 4 C -0.130 4.130 5 H 0.149 0.851 6 C -0.121 4.121 7 C 0.108 3.892 8 H 0.074 0.926 9 N -0.698 5.698 10 C 0.540 3.460 11 O -0.595 6.595 12 C -0.207 4.207 13 C -0.021 4.021 14 C -0.081 4.081 15 C -0.096 4.096 16 C -0.144 4.144 17 C -0.081 4.081 18 C -0.084 4.084 19 O -0.565 6.565 20 Si 0.774 3.226 21 C -0.103 4.103 22 C -0.099 4.099 23 C -0.120 4.120 24 H 0.420 0.580 25 H 0.405 0.595 26 H 0.128 0.872 27 H 0.067 0.933 28 H 0.421 0.579 29 H 0.163 0.837 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.404 0.596 35 H -0.295 1.295 36 H -0.286 1.286 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.064 0.936 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 -10.480 0.683 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.307 3.693 3 O -0.476 6.476 4 C -0.152 4.152 5 H 0.167 0.833 6 C -0.160 4.160 7 C 0.002 3.998 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.331 3.669 11 O -0.477 6.477 12 C -0.227 4.227 13 C -0.040 4.040 14 C -0.081 4.081 15 C -0.114 4.114 16 C -0.161 4.161 17 C -0.081 4.081 18 C -0.194 4.194 19 O -0.375 6.375 20 Si 0.680 3.320 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.158 4.158 24 H 0.251 0.749 25 H 0.236 0.764 26 H 0.146 0.854 27 H 0.085 0.915 28 H 0.260 0.740 29 H 0.180 0.820 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.255 0.745 35 H -0.223 1.223 36 H -0.213 1.213 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.083 0.917 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.207 -9.303 1.321 9.399 hybrid contribution -0.824 0.596 0.023 1.017 sum -0.617 -8.707 1.344 8.832 Atomic orbital electron populations 1.43746 1.06308 1.13855 1.76026 1.20701 0.83543 0.91008 0.74057 1.90761 1.69460 1.35552 1.51788 1.22227 0.96568 0.94756 1.01603 0.83349 1.23404 0.96667 1.01976 0.93961 1.22578 0.87686 0.95959 0.93534 0.90803 1.45722 1.36884 1.37993 1.14259 1.18807 0.83270 0.82670 0.82183 1.90820 1.57662 1.33659 1.65608 1.23015 0.99322 1.03470 0.96895 1.22360 0.91978 0.95425 0.94287 1.19107 0.96895 0.97214 0.94869 1.21572 0.94694 0.94322 1.00783 1.21023 0.99261 1.00980 0.94838 1.19936 0.96721 0.97264 0.94196 1.24907 0.88060 0.99720 1.06704 1.86446 1.27598 1.39411 1.84004 0.94280 0.84049 0.76135 0.77559 1.21177 0.95071 0.94698 1.01111 1.21724 0.96468 0.99374 0.94080 1.23275 0.94557 1.04403 0.93584 0.74889 0.76365 0.85415 0.91460 0.74044 0.81997 0.85620 0.82783 0.85910 0.88697 0.74483 1.22262 1.21326 0.84036 0.83670 0.91705 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 3.37 8.87 -173.54 -1.54 1.83 16 2 C 0.52 1.78 7.36 87.66 0.64 2.43 16 3 O -0.60 -8.80 16.58 -3.03 -0.05 -8.85 16 4 C -0.13 0.53 4.34 -11.01 -0.05 0.48 16 5 H 0.15 -1.67 8.14 -2.39 -0.02 -1.69 16 6 C -0.12 0.44 7.46 31.12 0.23 0.68 16 7 C 0.11 0.30 3.89 45.52 0.18 0.48 16 8 H 0.07 0.96 7.39 -2.39 -0.02 0.94 16 9 N -0.70 -0.11 5.35 -444.27 -2.38 -2.48 16 10 C 0.54 3.83 7.74 86.38 0.67 4.50 16 11 O -0.59 -10.38 15.83 -4.33 -0.07 -10.45 16 12 C -0.21 -0.32 9.41 23.62 0.22 -0.10 16 13 C -0.02 -0.08 9.46 23.84 0.23 0.14 16 14 C -0.08 -0.28 5.87 -20.15 -0.12 -0.40 16 15 C -0.10 -0.20 9.41 22.58 0.21 0.01 16 16 C -0.14 -0.57 8.65 22.23 0.19 -0.38 16 17 C -0.08 -0.33 5.39 -19.79 -0.11 -0.43 16 18 C -0.08 0.10 2.79 71.23 0.20 0.30 16 19 O -0.56 0.34 12.81 -148.98 -1.91 -1.57 16 20 Si 0.77 -2.39 29.83 68.60 2.05 -0.34 16 21 C -0.10 -0.36 9.66 22.23 0.21 -0.15 16 22 C -0.10 -0.32 9.80 22.57 0.22 -0.10 16 23 C -0.12 0.22 7.20 31.12 0.22 0.45 16 24 H 0.42 -4.67 8.83 -92.71 -0.82 -5.49 16 25 H 0.41 -1.63 8.93 -92.71 -0.83 -2.46 16 26 H 0.13 -1.17 8.14 -2.38 -0.02 -1.19 16 27 H 0.07 -0.07 8.09 -2.39 -0.02 -0.09 16 28 H 0.42 -3.35 8.71 -92.70 -0.81 -4.16 16 29 H 0.16 -0.95 6.07 -2.91 -0.02 -0.97 16 30 H 0.13 0.80 7.52 -2.91 -0.02 0.78 16 31 H 0.15 -0.60 6.17 -2.91 -0.02 -0.61 16 32 H 0.12 0.33 4.84 -2.91 -0.01 0.31 16 33 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 34 H 0.40 -4.51 8.74 -74.06 -0.65 -5.16 16 35 H -0.29 -1.23 7.04 99.48 0.70 -0.53 16 36 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 37 H 0.14 0.10 8.06 -2.91 -0.02 0.07 16 38 H 0.15 -0.01 8.06 -2.91 -0.02 -0.04 16 39 H 0.06 0.29 7.43 -2.39 -0.02 0.27 16 40 H 0.13 -1.19 8.12 -2.39 -0.02 -1.21 16 Total: 0.00 -32.85 343.07 -2.68 -35.53 By element: Atomic # 1 Polarization: -19.63 SS G_CDS: -1.94 Total: -21.58 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 3.16 Total: 7.91 kcal Atomic # 7 Polarization: 3.26 SS G_CDS: -3.92 Total: -0.65 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -2.03 Total: -20.87 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.05 Total: -0.34 kcal Total: -32.85 -2.68 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds