Wall clock time and date at job start Thu Mar 4 2021 13:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35654 * 117.00303 * 2 1 4 4 C 1.40137 * 120.15140 * 179.97438 * 3 2 1 5 5 C 1.47531 * 120.19158 * 0.03822 * 4 3 2 6 6 O 1.21595 * 119.99987 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00323 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00276 * 180.02562 * 7 5 4 9 9 H 1.08996 * 112.85112 * 25.34271 * 8 7 5 10 10 C 1.53782 * 113.61316 * 156.53276 * 8 7 5 11 11 C 1.53772 * 87.08168 * 139.98455 * 10 8 7 12 12 H 1.09002 * 113.61946 * 219.93550 * 11 10 8 13 13 C 1.50698 * 113.61595 * 89.11719 * 11 10 8 14 14 N 1.34784 * 120.00118 * 180.02562 * 13 11 10 15 15 O 1.21284 * 119.99978 * 359.97438 * 13 11 10 16 16 C 1.53774 * 113.61783 * 254.14244 * 8 7 5 17 17 C 1.39708 * 119.61715 * 179.77338 * 4 3 2 18 18 C 1.37787 * 119.90633 * 0.52553 * 17 4 3 19 19 C 1.50698 * 119.84984 * 179.75385 * 18 17 4 20 20 O 1.42895 * 109.47614 * 64.72009 * 19 18 17 21 21 Si 1.86300 * 109.47338 * 184.72009 * 19 18 17 22 22 C 1.38548 * 120.30326 * 359.46563 * 18 17 4 23 23 C 1.38065 * 120.38604 * 0.26527 * 22 18 17 24 24 H 1.08996 * 109.47532 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47158 * 300.00153 * 1 2 3 26 26 H 1.09001 * 109.46791 * 59.99948 * 1 2 3 27 27 H 0.96996 * 119.99729 * 0.02562 * 7 5 4 28 28 H 1.09005 * 113.61516 * 254.53396 * 10 8 7 29 29 H 1.09000 * 113.61659 * 25.34884 * 10 8 7 30 30 H 0.97002 * 119.99586 * 0.02562 * 14 13 11 31 31 H 0.96992 * 119.99675 * 179.97438 * 14 13 11 32 32 H 1.09002 * 113.61437 * 334.56647 * 16 8 7 33 33 H 1.08994 * 113.62129 * 105.47132 * 16 8 7 34 34 H 1.08001 * 120.04954 * 180.24858 * 17 4 3 35 35 H 1.09001 * 109.47122 * 304.72084 * 19 18 17 36 36 H 0.96698 * 114.00355 * 180.02562 * 20 19 18 37 37 H 1.48506 * 110.00048 * 300.00058 * 21 19 18 38 38 H 1.48502 * 109.99996 * 61.31383 * 21 19 18 39 39 H 1.07994 * 119.81068 * 180.27620 * 22 18 17 40 40 H 1.08002 * 119.95246 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4442 1.2856 0.0005 5 6 4.2550 0.0531 0.0003 6 8 3.7094 -1.0336 -0.0009 7 7 5.6005 0.1316 0.0003 8 6 6.4056 -1.0923 -0.0006 9 1 5.8799 -1.9446 -0.4310 10 6 7.8240 -0.8962 -0.5616 11 6 8.3116 -1.8286 0.5597 12 1 9.2520 -1.5134 1.0119 13 6 8.3058 -3.2864 0.1779 14 7 8.7086 -4.2172 1.0656 15 8 7.9377 -3.6222 -0.9279 16 6 7.0659 -1.3963 1.3545 17 6 4.0669 2.5362 -0.0043 18 6 3.3039 3.6836 0.0015 19 6 3.9769 5.0319 0.0019 20 8 4.6996 5.2041 -1.2188 21 14 2.6887 6.3691 0.1547 22 6 1.9207 3.6034 0.0008 23 6 1.2925 2.3739 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 6.0357 0.9984 0.0008 28 1 7.9588 -1.3083 -1.5617 29 1 8.1915 0.1260 -0.4720 30 1 9.0019 -3.9487 1.9504 31 1 8.7045 -5.1555 0.8199 32 1 7.2264 -0.5114 1.9703 33 1 6.5898 -2.2115 1.8992 34 1 5.1448 2.6037 -0.0079 35 1 4.6663 5.0936 0.8439 36 1 5.1593 6.0520 -1.2876 37 1 1.7425 6.2957 -0.9876 38 1 1.9515 6.2201 1.4351 39 1 1.3305 4.5077 0.0008 40 1 0.2139 2.3195 -0.0001 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12496546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:20 Heat of formation + Delta-G solvation = -87.289651 kcal Electronic energy + Delta-G solvation = -25228.864048 eV Core-core repulsion = 21397.407637 eV Total energy + Delta-G solvation = -3831.456411 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03167 -41.46179 -40.06618 -39.18829 -38.29852 -37.17115 -34.85910 -34.51854 -32.64385 -32.01721 -28.69878 -27.27553 -26.75426 -26.14369 -25.16139 -23.17690 -22.29062 -21.56064 -20.37426 -19.54261 -18.47875 -18.27269 -18.18721 -18.02596 -17.62718 -17.02211 -16.95652 -16.32542 -16.16028 -16.03793 -15.69684 -15.53990 -15.44385 -14.94130 -14.62804 -14.30012 -14.17182 -13.93182 -13.71067 -13.48133 -13.29780 -13.05392 -12.99761 -12.53090 -12.37205 -12.17513 -11.92677 -11.86274 -11.67174 -11.05894 -10.97258 -10.70782 -10.41460 -10.25387 -10.08030 -9.41102 -4.91236 -0.43433 0.07943 1.33734 1.52967 1.62383 1.69097 1.98902 2.04197 2.14203 2.52574 2.54580 3.31319 3.37437 3.41589 3.42900 3.54558 3.71794 3.78502 3.87613 3.92497 4.05872 4.16441 4.22240 4.25271 4.27055 4.46075 4.52481 4.56954 4.60829 4.68527 4.77512 4.81334 4.85636 4.91401 4.99481 5.08769 5.13788 5.40558 5.48016 5.83682 6.16181 6.42492 6.46987 6.97936 7.15767 7.30387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.170 3.830 4 C -0.192 4.192 5 C 0.557 3.443 6 O -0.567 6.567 7 N -0.700 5.700 8 C 0.109 3.891 9 H 0.073 0.927 10 C -0.119 4.119 11 C -0.128 4.128 12 H 0.151 0.849 13 C 0.521 3.479 14 N -0.837 5.837 15 O -0.595 6.595 16 C -0.121 4.121 17 C -0.009 4.009 18 C -0.134 4.134 19 C -0.067 4.067 20 O -0.563 6.563 21 Si 0.765 3.235 22 C -0.065 4.065 23 C -0.214 4.214 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.416 0.584 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.420 0.580 31 H 0.405 0.595 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.405 0.595 37 H -0.299 1.299 38 H -0.288 1.288 39 H 0.131 0.869 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 8.982 6.378 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.222 6.222 3 C 0.122 3.878 4 C -0.196 4.196 5 C 0.345 3.655 6 O -0.446 6.446 7 N -0.353 5.353 8 C 0.004 3.996 9 H 0.091 0.909 10 C -0.157 4.157 11 C -0.149 4.149 12 H 0.169 0.831 13 C 0.307 3.693 14 N -0.400 5.400 15 O -0.476 6.476 16 C -0.160 4.160 17 C -0.027 4.027 18 C -0.134 4.134 19 C -0.178 4.178 20 O -0.373 6.373 21 Si 0.672 3.328 22 C -0.082 4.082 23 C -0.233 4.233 24 H 0.130 0.870 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.255 0.745 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.251 0.749 31 H 0.236 0.764 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.123 0.877 36 H 0.256 0.744 37 H -0.227 1.227 38 H -0.215 1.215 39 H 0.148 0.852 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.649 7.561 5.624 10.105 hybrid contribution -0.379 -0.875 0.099 0.959 sum 3.270 6.686 5.723 9.389 Atomic orbital electron populations 1.23456 0.76551 1.05656 1.02669 1.86345 1.23198 1.26109 1.86563 1.19371 0.91580 0.85261 0.91632 1.19508 0.90975 0.94353 1.14797 1.18288 0.83041 0.88329 0.75829 1.90817 1.72642 1.30445 1.50739 1.45715 1.04699 1.10225 1.74656 1.22602 0.90886 0.87597 0.98482 0.90923 1.23273 0.92500 1.01391 0.98534 1.22247 1.02668 0.90086 0.99936 0.83095 1.20722 0.75117 0.89504 0.83975 1.43745 1.67984 1.10242 1.17991 1.90762 1.49358 1.83333 1.24153 1.23440 0.93273 1.03176 0.96102 1.21207 1.01256 0.88534 0.91727 1.19544 0.92827 0.95586 1.05473 1.24641 1.03805 0.98360 0.90957 1.86448 1.69611 1.44292 1.36976 0.94353 0.77596 0.84783 0.76094 1.21123 0.94614 0.97259 0.95252 1.21363 1.01612 0.90979 1.09299 0.87007 0.90860 0.91223 0.74507 0.91619 0.84931 0.74887 0.76400 0.85339 0.91536 0.81637 0.87676 0.74358 1.22683 1.21524 0.85201 0.82492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.14 16 2 O -0.31 -3.96 8.57 -68.78 -0.59 -4.55 16 3 C 0.17 1.72 6.70 22.84 0.15 1.87 16 4 C -0.19 -1.67 5.89 -20.01 -0.12 -1.79 16 5 C 0.56 6.63 7.76 86.69 0.67 7.31 16 6 O -0.57 -12.29 14.78 16.91 0.25 -12.04 16 7 N -0.70 -2.24 5.31 -443.21 -2.35 -4.60 16 8 C 0.11 0.49 3.86 45.52 0.18 0.67 16 9 H 0.07 1.07 7.42 -2.39 -0.02 1.05 16 10 C -0.12 0.13 7.20 31.12 0.22 0.35 16 11 C -0.13 0.45 4.35 -10.96 -0.05 0.40 16 12 H 0.15 -1.68 8.14 -2.39 -0.02 -1.70 16 13 C 0.52 2.10 7.35 87.66 0.64 2.74 16 14 N -0.84 2.92 8.87 -173.52 -1.54 1.38 16 15 O -0.60 -9.23 16.58 -3.04 -0.05 -9.28 16 16 C -0.12 0.31 7.47 31.18 0.23 0.54 16 17 C -0.01 -0.02 9.16 22.52 0.21 0.19 16 18 C -0.13 -0.27 5.38 -19.90 -0.11 -0.38 16 19 C -0.07 0.31 2.79 71.24 0.20 0.51 16 20 O -0.56 2.53 12.80 -148.98 -1.91 0.62 16 21 Si 0.76 -3.65 29.84 68.60 2.05 -1.61 16 22 C -0.06 -0.26 8.65 22.30 0.19 -0.06 16 23 C -0.21 -1.10 9.03 22.34 0.20 -0.90 16 24 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.07 -0.07 7.66 -2.39 -0.02 -0.09 16 26 H 0.07 -0.01 7.66 -2.39 -0.02 -0.03 16 27 H 0.42 -1.92 6.74 -92.71 -0.63 -2.55 16 28 H 0.07 0.34 7.43 -2.38 -0.02 0.32 16 29 H 0.13 -1.13 8.11 -2.39 -0.02 -1.15 16 30 H 0.42 -4.48 8.83 -92.71 -0.82 -5.30 16 31 H 0.41 -1.41 8.93 -92.71 -0.83 -2.24 16 32 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.07 0.02 8.09 -2.39 -0.02 0.00 16 34 H 0.17 -0.85 6.40 -2.91 -0.02 -0.86 16 35 H 0.11 -1.07 7.96 -2.39 -0.02 -1.09 16 36 H 0.40 -6.00 8.74 -74.06 -0.65 -6.64 16 37 H -0.30 -0.96 7.04 99.48 0.70 -0.26 16 38 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 39 H 0.13 0.27 4.84 -2.91 -0.01 0.26 16 40 H 0.16 0.04 6.30 -2.91 -0.02 0.03 16 Total: 0.00 -36.12 335.87 -2.15 -38.27 By element: Atomic # 1 Polarization: -19.03 SS G_CDS: -1.75 Total: -20.78 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 3.74 Total: 12.59 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -3.89 Total: -3.22 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -2.30 Total: -25.26 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.05 Total: -1.61 kcal Total: -36.12 -2.15 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12496546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.019 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds