Wall clock time and date at job start Thu Mar 4 2021 13:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35888 * 116.99981 * 2 1 4 4 C 1.38824 * 119.93330 * 180.02562 * 3 2 1 5 5 C 1.37927 * 120.06071 * 180.02562 * 4 3 2 6 6 C 1.39354 * 119.93522 * 0.02562 * 5 4 3 7 7 C 1.48410 * 120.06256 * 179.97438 * 6 5 4 8 8 N 1.31632 * 126.03551 * 317.76805 * 7 6 5 9 9 N 1.40063 * 108.10708 * 180.12886 * 8 7 6 10 10 C 1.46504 * 125.92933 * 179.86211 * 9 8 7 11 11 C 1.50710 * 109.46667 * 304.68692 * 10 9 8 12 12 O 1.21281 * 119.99804 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99798 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99844 * 180.02562 * 13 11 10 15 15 H 1.08995 * 112.84719 * 25.32793 * 14 13 11 16 16 C 1.53780 * 113.60998 * 156.52948 * 14 13 11 17 17 C 1.53791 * 87.07930 * 140.06372 * 16 14 13 18 18 H 1.08998 * 113.61146 * 219.93036 * 17 16 14 19 19 C 1.50700 * 113.61196 * 89.11157 * 17 16 14 20 20 N 1.34777 * 119.99702 * 180.02562 * 19 17 16 21 21 O 1.21277 * 120.00351 * 0.02562 * 19 17 16 22 22 C 1.53782 * 113.68605 * 254.06377 * 14 13 11 23 23 C 1.35032 * 108.14433 * 359.59369 * 9 8 7 24 24 C 1.35097 * 107.97891 * 0.24082 * 23 9 8 25 25 C 1.50700 * 126.07449 * 180.02562 * 24 23 9 26 26 O 1.42902 * 109.47130 * 105.17585 * 25 24 23 27 27 Si 1.86292 * 109.47356 * 345.17305 * 25 24 23 28 28 C 1.39351 * 119.87498 * 0.24712 * 6 5 4 29 29 C 1.37925 * 119.93279 * 359.47025 * 28 6 5 30 30 H 1.08999 * 109.47249 * 59.99695 * 1 2 3 31 31 H 1.08996 * 109.47025 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46961 * 299.99986 * 1 2 3 33 33 H 1.07993 * 119.97125 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.03163 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46855 * 184.69316 * 10 9 8 36 36 H 1.08990 * 109.47196 * 64.68595 * 10 9 8 37 37 H 0.97001 * 119.99687 * 359.97438 * 13 11 10 38 38 H 1.08998 * 113.61228 * 254.60652 * 16 14 13 39 39 H 1.08991 * 113.62133 * 25.51767 * 16 14 13 40 40 H 0.97000 * 120.00490 * 359.97438 * 20 19 17 41 41 H 0.97001 * 120.00324 * 180.02562 * 20 19 17 42 42 H 1.08994 * 113.61689 * 334.55395 * 22 14 13 43 43 H 1.08999 * 113.61605 * 105.46368 * 22 14 13 44 44 H 1.08000 * 126.01581 * 180.27692 * 23 9 8 45 45 H 1.08999 * 109.46620 * 225.17067 * 25 24 23 46 46 H 0.96691 * 113.99929 * 179.97438 * 26 25 24 47 47 H 1.48501 * 110.00158 * 60.00327 * 27 25 24 48 48 H 1.48503 * 109.99805 * 181.31917 * 27 25 24 49 49 H 1.08002 * 120.03609 * 179.75456 * 28 6 5 50 50 H 1.07997 * 119.96996 * 180.25157 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4323 1.2818 -0.0005 5 6 4.0612 2.5094 0.0000 6 6 3.3035 3.6789 0.0016 7 6 3.9773 5.0013 0.0028 8 7 5.0314 5.3326 0.7181 9 7 5.3500 6.6662 0.4319 10 6 6.4551 7.4304 1.0158 11 6 6.3474 7.4006 2.5188 12 8 5.4374 6.7997 3.0497 13 7 7.2623 8.0416 3.2728 14 6 7.1579 8.0121 4.7338 15 1 6.6197 7.1388 5.1021 16 6 8.4949 8.2601 5.4519 17 6 7.7045 9.1074 6.4631 18 1 8.2238 10.0141 6.7733 19 6 7.1671 8.3138 7.6260 20 7 6.4536 8.9294 8.5896 21 8 7.3766 7.1212 7.6949 22 6 6.6735 9.3374 5.3454 23 6 4.4655 7.1234 -0.4802 24 6 3.6056 6.1214 -0.7660 25 6 2.4539 6.1898 -1.7355 26 8 2.7915 5.4774 -2.9273 27 14 2.1003 7.9701 -2.1551 28 6 1.9120 3.6045 0.0079 29 6 1.2886 2.3742 0.0015 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0190 0.3751 -0.0005 34 1 5.1398 2.5641 -0.0008 35 1 6.4066 8.4624 0.6685 36 1 7.4036 6.9885 0.7107 37 1 7.9902 8.5218 2.8481 38 1 8.9320 7.3599 5.8839 39 1 9.2072 8.8365 4.8618 40 1 6.2863 9.8833 8.5348 41 1 6.1079 8.4187 9.3384 42 1 6.8880 10.2083 4.7261 43 1 5.6404 9.3068 5.6913 44 1 4.4487 8.1154 -0.9068 45 1 1.5702 5.7409 -1.2820 46 1 2.0945 5.4793 -3.5974 47 1 3.2975 8.5934 -2.7742 48 1 0.9460 8.0529 -3.0857 49 1 1.3222 4.5092 0.0132 50 1 0.2102 2.3158 0.0022 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12622750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:28 Heat of formation + Delta-G solvation = -4.922676 kcal Electronic energy + Delta-G solvation = -35154.677913 eV Core-core repulsion = 30344.650103 eV Total energy + Delta-G solvation = -4810.027811 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.167 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.47925 -41.71524 -41.02515 -40.36577 -38.53584 -38.29508 -37.71996 -34.86630 -34.67778 -34.26685 -32.38916 -32.03302 -31.17459 -29.12615 -28.06316 -26.89250 -26.72604 -25.75668 -23.93964 -23.66467 -22.81255 -21.87754 -21.52338 -20.90360 -20.29584 -19.19690 -18.53277 -18.46980 -18.28703 -18.02806 -17.93379 -17.20389 -17.09084 -16.70672 -16.67437 -16.35010 -16.03759 -15.87299 -15.56006 -15.52082 -15.33984 -15.12425 -14.82450 -14.64296 -14.55317 -14.31491 -14.22458 -13.83957 -13.71450 -13.59108 -13.37829 -13.23308 -13.04100 -12.99486 -12.79653 -12.64385 -12.27089 -12.11049 -11.85874 -11.82899 -11.67164 -11.51630 -11.17559 -11.00383 -10.71441 -10.48055 -10.23042 -10.10419 -10.05344 -9.65687 -8.97153 -4.83841 0.08266 0.30216 0.82113 1.28476 1.41331 1.48302 1.54160 1.64735 1.67630 2.00904 2.13775 2.31359 2.54112 2.74864 3.31406 3.39252 3.43738 3.60648 3.63914 3.74116 3.74347 3.81345 3.86612 3.89378 3.95617 4.13039 4.14920 4.22232 4.27426 4.28916 4.37554 4.37723 4.50018 4.54726 4.56644 4.70192 4.70734 4.74747 4.81728 4.87000 4.89576 4.99755 5.00709 5.04521 5.10567 5.23047 5.48755 5.49958 5.52801 5.66049 5.83048 5.92449 6.37045 6.42762 6.50258 6.61102 6.72903 7.20703 7.30435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.122 3.878 4 C -0.164 4.164 5 C -0.067 4.067 6 C -0.060 4.060 7 C 0.115 3.885 8 N -0.297 5.297 9 N -0.360 5.360 10 C 0.111 3.889 11 C 0.495 3.505 12 O -0.567 6.567 13 N -0.698 5.698 14 C 0.113 3.887 15 H 0.065 0.935 16 C -0.120 4.120 17 C -0.132 4.132 18 H 0.149 0.851 19 C 0.520 3.480 20 N -0.837 5.837 21 O -0.597 6.597 22 C -0.117 4.117 23 C 0.075 3.925 24 C -0.227 4.227 25 C -0.054 4.054 26 O -0.558 6.558 27 Si 0.770 3.230 28 C -0.058 4.058 29 C -0.204 4.204 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.183 0.817 36 H 0.138 0.862 37 H 0.424 0.576 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.420 0.580 41 H 0.404 0.596 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.217 0.783 45 H 0.077 0.923 46 H 0.388 0.612 47 H -0.275 1.275 48 H -0.286 1.286 49 H 0.147 0.853 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 13.516 -0.743 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.076 3.924 4 C -0.183 4.183 5 C -0.086 4.086 6 C -0.062 4.062 7 C -0.050 4.050 8 N -0.119 5.119 9 N -0.142 5.142 10 C -0.013 4.013 11 C 0.280 3.720 12 O -0.444 6.444 13 N -0.352 5.352 14 C 0.007 3.993 15 H 0.083 0.917 16 C -0.158 4.158 17 C -0.153 4.153 18 H 0.167 0.833 19 C 0.305 3.695 20 N -0.400 5.400 21 O -0.478 6.478 22 C -0.156 4.156 23 C -0.070 4.070 24 C -0.238 4.238 25 C -0.163 4.163 26 O -0.367 6.367 27 Si 0.672 3.328 28 C -0.077 4.077 29 C -0.222 4.222 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.200 0.800 36 H 0.156 0.844 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.153 0.847 40 H 0.251 0.749 41 H 0.235 0.765 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.233 0.767 45 H 0.095 0.905 46 H 0.238 0.762 47 H -0.201 1.201 48 H -0.213 1.213 49 H 0.164 0.836 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.778 12.389 0.155 12.415 hybrid contribution -0.818 -0.767 -0.938 1.462 sum -0.041 11.623 -0.782 11.649 Atomic orbital electron populations 1.23374 0.76268 1.05641 1.02481 1.86057 1.23646 1.26775 1.88426 1.19267 0.92397 0.84946 0.95745 1.20486 0.92123 0.98534 1.07134 1.21017 0.99863 0.91020 0.96681 1.17863 0.93296 0.89282 1.05806 1.20749 0.94288 0.94346 0.95610 1.77714 1.17362 0.94208 1.22597 1.48091 1.24782 1.08556 1.32733 1.22014 0.89662 1.00130 0.89496 1.21158 0.82145 0.78290 0.90409 1.90827 1.35338 1.43423 1.74805 1.45701 1.29701 1.53854 1.05978 1.22477 0.98831 0.98564 0.79434 0.91653 1.23283 0.96019 1.00488 0.96012 1.22245 0.99977 1.00982 0.92136 0.83286 1.20793 0.77212 0.87221 0.84260 1.43761 1.55779 1.14614 1.25857 1.90767 1.60208 1.17942 1.78900 1.23397 0.98214 0.98589 0.95417 1.22771 0.90054 1.01134 0.93078 1.19604 1.04314 0.93806 1.06056 1.24495 0.96260 1.09861 0.85638 1.86608 1.46450 1.75542 1.28104 0.94266 0.77480 0.74596 0.86426 1.21128 0.92599 0.98255 0.95699 1.21401 1.01375 0.91193 1.08251 0.91320 0.86519 0.91568 0.84395 0.85807 0.79961 0.84394 0.73674 0.92163 0.84661 0.74859 0.76481 0.84779 0.91762 0.76697 0.90507 0.76211 1.20073 1.21302 0.83569 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.34 -2.77 10.49 -92.29 -0.97 -3.74 16 3 C 0.12 1.19 6.69 22.55 0.15 1.34 16 4 C -0.16 -1.87 9.97 22.34 0.22 -1.65 16 5 C -0.07 -0.87 9.77 22.46 0.22 -0.65 16 6 C -0.06 -0.77 5.74 -20.03 -0.12 -0.89 16 7 C 0.12 1.52 6.66 42.52 0.28 1.81 16 8 N -0.30 -4.40 11.69 -48.16 -0.56 -4.96 16 9 N -0.36 -1.93 3.39 -351.90 -1.19 -3.13 16 10 C 0.11 -0.53 6.99 85.64 0.60 0.07 16 11 C 0.49 1.32 7.86 87.66 0.69 2.01 16 12 O -0.57 -9.15 15.33 -3.03 -0.05 -9.19 16 13 N -0.70 3.21 5.36 -440.03 -2.36 0.85 16 14 C 0.11 0.04 3.87 45.52 0.18 0.22 16 15 H 0.07 0.80 7.42 -2.39 -0.02 0.78 16 16 C -0.12 0.45 7.20 31.12 0.22 0.68 16 17 C -0.13 0.74 4.34 -11.01 -0.05 0.69 16 18 H 0.15 -1.92 8.14 -2.39 -0.02 -1.94 16 19 C 0.52 1.48 7.36 87.66 0.64 2.12 16 20 N -0.84 3.75 8.87 -173.54 -1.54 2.21 16 21 O -0.60 -8.82 16.58 -3.02 -0.05 -8.87 16 22 C -0.12 0.73 7.46 31.12 0.23 0.96 16 23 C 0.07 0.16 9.96 83.48 0.83 0.99 16 24 C -0.23 -1.59 5.39 -19.95 -0.11 -1.70 16 25 C -0.05 -0.12 2.50 71.24 0.18 0.05 16 26 O -0.56 -2.99 12.86 -148.98 -1.92 -4.91 16 27 Si 0.77 -2.46 30.77 68.60 2.11 -0.35 16 28 C -0.06 -0.47 8.88 22.46 0.20 -0.27 16 29 C -0.20 -1.29 9.02 22.33 0.20 -1.08 16 30 H 0.07 -0.21 7.66 -2.39 -0.02 -0.22 16 31 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 -0.16 7.65 -2.39 -0.02 -0.18 16 33 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.12 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.18 -2.97 8.07 -2.39 -0.02 -2.99 16 36 H 0.14 -1.21 8.14 -2.39 -0.02 -1.23 16 37 H 0.42 -5.93 8.71 -92.71 -0.81 -6.74 16 38 H 0.06 0.21 7.43 -2.39 -0.02 0.19 16 39 H 0.14 -1.60 8.11 -2.39 -0.02 -1.62 16 40 H 0.42 -4.97 8.83 -92.71 -0.82 -5.79 16 41 H 0.40 -1.68 8.93 -92.71 -0.83 -2.51 16 42 H 0.13 -1.73 8.14 -2.39 -0.02 -1.75 16 43 H 0.06 -0.18 8.09 -2.39 -0.02 -0.20 16 44 H 0.22 -1.54 6.35 -2.91 -0.02 -1.56 16 45 H 0.08 0.01 5.56 -2.39 -0.01 -0.01 16 46 H 0.39 -1.12 8.74 -74.06 -0.65 -1.77 16 47 H -0.27 -0.07 7.04 99.48 0.70 0.64 16 48 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 49 H 0.15 0.50 6.20 -2.91 -0.02 0.48 16 50 H 0.16 0.01 6.28 -2.91 -0.02 -0.01 16 Total: 0.00 -47.18 421.70 -2.85 -50.03 By element: Atomic # 1 Polarization: -21.72 SS G_CDS: -2.02 Total: -23.74 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.69 Total: 5.80 kcal Atomic # 7 Polarization: 0.62 SS G_CDS: -5.66 Total: -5.03 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -2.98 Total: -26.70 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.11 Total: -0.35 kcal Total: -47.18 -2.85 -50.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12622750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.106 kcal (2) G-P(sol) polarization free energy of solvation -47.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds