Wall clock time and date at job start Thu Mar 4 2021 13:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39286 * 121.03486 * 2 1 4 4 C 1.46500 * 134.19337 * 0.04795 * 3 2 1 5 5 C 1.50707 * 126.59836 * 359.97438 * 4 3 2 6 6 O 1.42892 * 109.47265 * 74.71162 * 5 4 3 7 7 Si 1.86296 * 109.47024 * 194.71375 * 5 4 3 8 8 C 1.34177 * 106.80408 * 179.71444 * 4 3 2 9 9 N 1.36949 * 109.94956 * 0.26496 * 8 4 3 10 10 C 1.37162 * 110.11565 * 359.97438 * 9 8 4 11 11 N 1.32818 * 132.97016 * 180.02562 * 10 9 8 12 12 C 1.31320 * 121.88738 * 179.19058 * 11 10 9 13 13 C 1.39756 * 121.03245 * 180.02562 * 2 1 3 14 14 C 1.47661 * 120.45153 * 359.97438 * 13 2 1 15 15 O 1.21573 * 120.00231 * 6.01187 * 14 13 2 16 16 N 1.34775 * 119.99767 * 186.00582 * 14 13 2 17 17 C 1.46507 * 119.99760 * 180.02562 * 16 14 13 18 18 H 1.08994 * 112.85234 * 23.80776 * 17 16 14 19 19 C 1.53779 * 113.61064 * 155.00226 * 17 16 14 20 20 C 1.53779 * 87.08177 * 139.98148 * 19 17 16 21 21 H 1.09005 * 113.61249 * 220.02109 * 20 19 17 22 22 C 1.50695 * 113.61641 * 89.19677 * 20 19 17 23 23 N 1.34778 * 119.99793 * 180.02562 * 22 20 19 24 24 O 1.21275 * 120.00430 * 0.02562 * 22 20 19 25 25 C 1.53779 * 87.07826 * 334.56205 * 20 19 17 26 26 H 1.08993 * 109.47286 * 96.28743 * 1 2 3 27 27 H 1.09001 * 109.46963 * 216.28744 * 1 2 3 28 28 H 1.09003 * 109.47126 * 336.28422 * 1 2 3 29 29 H 1.09002 * 109.46918 * 314.71136 * 5 4 3 30 30 H 0.96700 * 114.00265 * 59.99754 * 6 5 4 31 31 H 1.48502 * 110.00085 * 179.97438 * 7 5 4 32 32 H 1.48502 * 109.99896 * 301.31415 * 7 5 4 33 33 H 1.07994 * 125.02672 * 180.24243 * 8 4 3 34 34 H 0.97000 * 124.94336 * 180.02562 * 9 8 4 35 35 H 1.07996 * 119.30739 * 180.24822 * 12 11 10 36 36 H 0.96995 * 120.00547 * 0.02562 * 16 14 13 37 37 H 1.09004 * 113.61547 * 254.52565 * 19 17 16 38 38 H 1.09004 * 113.61992 * 25.34820 * 19 17 16 39 39 H 0.97002 * 120.00502 * 359.97438 * 23 22 20 40 40 H 0.97005 * 119.99819 * 180.02562 * 23 22 20 41 41 H 1.08998 * 113.61950 * 270.88364 * 25 20 19 42 42 H 1.09007 * 113.61372 * 139.98239 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1935 0.0000 4 6 1.8515 2.6101 0.0009 5 6 0.4525 3.1704 0.0016 6 8 -0.1214 3.0170 1.3012 7 14 0.5076 4.9785 -0.4436 8 6 2.9946 3.3126 0.0068 9 7 4.0668 2.4606 0.0038 10 6 3.6348 1.1588 -0.0037 11 7 4.2721 -0.0065 -0.0086 12 6 3.6266 -1.1501 0.0001 13 6 2.2274 -1.1975 -0.0005 14 6 1.5225 -2.4950 -0.0005 15 8 0.3122 -2.5293 -0.1104 16 7 2.2208 -3.6413 0.1211 17 6 1.5215 -4.9286 0.1205 18 1 0.5536 -4.8844 -0.3789 19 6 2.3982 -6.1057 -0.3386 20 6 1.7301 -6.9340 0.7715 21 1 2.4189 -7.5951 1.2975 22 6 0.4711 -7.6335 0.3281 23 7 -0.2193 -8.3951 1.1998 24 8 0.0790 -7.5110 -0.8129 25 6 1.4743 -5.6046 1.5009 26 1 -0.3633 -0.1125 -1.0214 27 1 -0.3633 -0.8284 0.6082 28 1 -0.3633 0.9409 0.4133 29 1 -0.1538 2.6347 -0.7289 30 1 0.3673 3.4688 2.0028 31 1 -0.8661 5.5429 -0.4470 32 1 1.3572 5.7148 0.5267 33 1 3.0596 4.3906 0.0126 34 1 4.9965 2.7374 0.0072 35 1 4.1870 -2.0734 -0.0002 36 1 3.1864 -3.6140 0.2090 37 1 2.1666 -6.4563 -1.3444 38 1 3.4646 -5.9430 -0.1821 39 1 0.0944 -8.4934 2.1124 40 1 -1.0295 -8.8457 0.9143 41 1 2.2879 -5.3055 2.1617 42 1 0.4968 -5.5506 1.9803 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_12890568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:36 Heat of formation + Delta-G solvation = -9.440259 kcal Electronic energy + Delta-G solvation = -28007.740040 eV Core-core repulsion = 23955.499902 eV Total energy + Delta-G solvation = -4052.240137 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.86258 -41.74288 -40.65695 -38.90510 -38.29285 -37.82392 -35.20629 -34.75336 -34.43720 -31.94697 -31.05022 -28.96093 -27.17103 -26.71452 -26.32828 -24.68714 -24.01224 -22.73519 -21.89205 -20.70004 -20.32300 -19.35516 -18.79430 -18.16049 -18.02423 -17.72697 -17.46983 -17.10500 -16.74232 -16.47761 -16.10252 -15.96560 -15.72739 -15.45408 -15.44034 -15.17300 -14.70898 -14.33017 -14.10488 -14.06829 -13.74371 -13.63150 -13.50592 -13.32776 -13.25842 -13.18359 -12.87753 -12.45880 -11.82464 -11.79506 -11.63972 -11.21700 -11.16124 -10.98808 -10.69200 -10.59874 -10.27943 -10.12942 -9.62328 -9.13514 -4.83566 -0.35742 -0.08182 1.35340 1.41968 1.55609 1.62512 1.68204 1.77808 2.04971 2.08356 2.55927 2.74959 3.30248 3.41723 3.44204 3.46652 3.53551 3.63396 3.70250 3.72912 3.78770 3.91309 4.13524 4.24960 4.28669 4.32723 4.49504 4.56849 4.60366 4.67168 4.71955 4.77221 4.82788 4.88150 4.99788 5.02423 5.09157 5.20232 5.26589 5.38893 5.53307 5.73143 5.85563 6.22033 6.44445 6.48833 6.59784 6.82802 7.17584 7.32306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.062 3.938 3 C -0.167 4.167 4 C -0.197 4.197 5 C -0.060 4.060 6 O -0.550 6.550 7 Si 0.781 3.219 8 C 0.092 3.908 9 N -0.559 5.559 10 C 0.290 3.710 11 N -0.514 5.514 12 C 0.182 3.818 13 C -0.241 4.241 14 C 0.567 3.433 15 O -0.571 6.571 16 N -0.699 5.699 17 C 0.112 3.888 18 H 0.078 0.922 19 C -0.120 4.120 20 C -0.130 4.130 21 H 0.148 0.852 22 C 0.522 3.478 23 N -0.837 5.837 24 O -0.594 6.594 25 C -0.122 4.122 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.385 0.615 31 H -0.309 1.309 32 H -0.256 1.256 33 H 0.221 0.779 34 H 0.439 0.561 35 H 0.197 0.803 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.419 0.581 40 H 0.405 0.595 41 H 0.127 0.873 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 1.583 4.052 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 C -0.174 4.174 4 C -0.204 4.204 5 C -0.168 4.168 6 O -0.358 6.358 7 Si 0.683 3.317 8 C -0.035 4.035 9 N -0.166 5.166 10 C 0.056 3.944 11 N -0.228 5.228 12 C 0.014 3.986 13 C -0.248 4.248 14 C 0.356 3.644 15 O -0.451 6.451 16 N -0.351 5.351 17 C 0.007 3.993 18 H 0.096 0.904 19 C -0.158 4.158 20 C -0.152 4.152 21 H 0.166 0.834 22 C 0.307 3.693 23 N -0.401 5.401 24 O -0.475 6.475 25 C -0.161 4.161 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.235 0.765 31 H -0.237 1.237 32 H -0.182 1.182 33 H 0.237 0.763 34 H 0.280 0.720 35 H 0.214 0.786 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.251 0.749 40 H 0.236 0.764 41 H 0.145 0.855 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.657 2.354 3.159 8.611 hybrid contribution -0.743 -0.747 1.322 1.691 sum 6.913 1.606 4.482 8.394 Atomic orbital electron populations 1.21081 0.89729 1.03960 1.03013 1.20049 0.96892 0.90308 0.87394 1.19752 0.93335 0.94350 1.09943 1.20708 0.96117 0.90237 1.13362 1.24757 0.90583 1.13925 0.87558 1.86583 1.55148 1.76742 1.17368 0.94046 0.79276 0.69992 0.88337 1.22327 0.83954 0.97217 1.00032 1.41599 1.10610 1.01684 1.62693 1.18764 0.89422 0.86887 0.99296 1.66533 1.40740 0.96427 1.19074 1.22990 0.89477 0.95418 0.90726 1.20507 0.95590 0.93153 1.15575 1.18131 0.86499 0.84303 0.75463 1.90750 1.15477 1.87574 1.51318 1.45706 1.11212 1.04452 1.73739 1.22587 0.97078 0.81416 0.98199 0.90389 1.23286 1.00942 0.92745 0.98846 1.22219 0.95199 0.97513 1.00266 0.83441 1.20703 0.85655 0.78210 0.84687 1.43761 1.29661 1.50980 1.15650 1.90759 1.70796 1.64219 1.21691 1.23417 1.04189 0.92089 0.96444 0.90764 0.90387 0.89838 0.87486 0.76535 1.23726 1.18167 0.76251 0.71985 0.78606 0.74452 0.91560 0.85008 0.74945 0.76417 0.85499 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.46 71.23 0.60 -0.66 16 2 C 0.06 0.55 5.98 -19.25 -0.12 0.44 16 3 C -0.17 -1.01 6.16 -20.19 -0.12 -1.14 16 4 C -0.20 -0.06 5.57 -18.63 -0.10 -0.17 16 5 C -0.06 0.01 1.88 71.24 0.13 0.14 16 6 O -0.55 -1.67 11.64 -148.98 -1.73 -3.41 16 7 Si 0.78 -3.80 30.83 68.60 2.11 -1.69 16 8 C 0.09 -0.51 10.44 82.97 0.87 0.36 16 9 N -0.56 1.87 6.04 -192.25 -1.16 0.71 16 10 C 0.29 1.20 8.42 134.02 1.13 2.33 16 11 N -0.51 -2.34 10.37 -191.75 -1.99 -4.33 16 12 C 0.18 0.32 10.67 85.20 0.91 1.23 16 13 C -0.24 -1.54 5.89 -19.99 -0.12 -1.66 16 14 C 0.57 4.56 7.72 86.73 0.67 5.23 16 15 O -0.57 -9.31 13.09 -3.95 -0.05 -9.36 16 16 N -0.70 -0.11 5.31 -443.08 -2.35 -2.47 16 17 C 0.11 0.23 3.89 45.52 0.18 0.41 16 18 H 0.08 0.91 7.40 -2.39 -0.02 0.89 16 19 C -0.12 0.31 7.20 31.12 0.22 0.54 16 20 C -0.13 0.58 4.34 -11.02 -0.05 0.53 16 21 H 0.15 -1.69 8.14 -2.38 -0.02 -1.71 16 22 C 0.52 1.59 7.36 87.66 0.65 2.23 16 23 N -0.84 3.46 8.87 -173.54 -1.54 1.92 16 24 O -0.59 -8.46 16.59 -3.01 -0.05 -8.51 16 25 C -0.12 0.49 7.46 31.12 0.23 0.72 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.10 5.96 -2.39 -0.01 1.09 16 28 H 0.08 0.78 4.77 -2.39 -0.01 0.77 16 29 H 0.11 0.15 7.15 -2.39 -0.02 0.13 16 30 H 0.39 -1.36 8.70 -74.06 -0.64 -2.01 16 31 H -0.31 -1.38 7.11 99.48 0.71 -0.67 16 32 H -0.26 1.27 7.00 99.48 0.70 1.96 16 33 H 0.22 -3.00 6.28 -2.91 -0.02 -3.01 16 34 H 0.44 -3.93 8.96 -92.71 -0.83 -4.76 16 35 H 0.20 -1.39 6.43 -2.91 -0.02 -1.41 16 36 H 0.42 -3.15 6.80 -92.71 -0.63 -3.78 16 37 H 0.07 0.23 7.43 -2.38 -0.02 0.22 16 38 H 0.13 -1.30 8.12 -2.38 -0.02 -1.32 16 39 H 0.42 -4.65 8.83 -92.71 -0.82 -5.47 16 40 H 0.40 -1.65 8.93 -92.70 -0.83 -2.48 16 41 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.07 -0.08 8.10 -2.38 -0.02 -0.10 16 Total: 0.00 -34.44 346.58 -4.24 -38.68 By element: Atomic # 1 Polarization: -19.52 SS G_CDS: -2.56 Total: -22.08 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 5.08 Total: 10.53 kcal Atomic # 7 Polarization: 2.87 SS G_CDS: -7.04 Total: -4.17 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.84 Total: -21.28 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.11 Total: -1.69 kcal Total: -34.44 -4.24 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_12890568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.238 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds