Wall clock time and date at job start Thu Mar 4 2021 13:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34770 * 1 3 3 O 1.21275 * 120.00279 * 2 1 4 4 C 1.50706 * 119.99739 * 179.97438 * 2 1 3 5 5 H 1.08996 * 112.90332 * 48.75158 * 4 2 1 6 6 C 1.53782 * 113.61167 * 180.02562 * 4 2 1 7 7 C 1.53776 * 87.08186 * 89.11709 * 6 4 2 8 8 H 1.08998 * 113.61427 * 270.79776 * 7 6 4 9 9 N 1.46504 * 113.61383 * 139.98156 * 7 6 4 10 10 C 1.34778 * 119.99731 * 155.00300 * 9 7 6 11 11 O 1.21641 * 120.00160 * 359.97438 * 10 9 7 12 12 C 1.47065 * 119.99388 * 179.97438 * 10 9 7 13 13 C 1.35864 * 125.42354 * 179.97438 * 12 10 9 14 14 C 1.41584 * 107.72968 * 180.02562 * 13 12 10 15 15 C 1.40069 * 133.38604 * 179.97438 * 14 13 12 16 16 C 1.36475 * 119.83020 * 179.76053 * 15 14 13 17 17 C 1.38900 * 120.61354 * 0.51643 * 16 15 14 18 18 C 1.50694 * 119.67092 * 179.73604 * 17 16 15 19 19 O 1.42901 * 109.47118 * 244.72516 * 18 17 16 20 20 Si 1.86298 * 109.47775 * 4.72761 * 18 17 16 21 21 C 1.37705 * 120.64898 * 359.45788 * 17 16 15 22 22 C 1.39192 * 119.80995 * 0.28031 * 21 17 16 23 23 N 1.37487 * 133.18267 * 179.97438 * 22 21 17 24 24 C 1.53774 * 113.61532 * 277.49955 * 4 2 1 25 25 H 0.97002 * 120.00475 * 180.02562 * 1 2 3 26 26 H 0.97007 * 120.00280 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.61167 * 334.56721 * 6 4 2 28 28 H 1.09003 * 113.68788 * 203.68097 * 6 4 2 29 29 H 0.97003 * 119.99895 * 334.99531 * 9 7 6 30 30 H 1.08006 * 126.13502 * 0.02562 * 13 12 10 31 31 H 1.08003 * 120.08084 * 0.02562 * 15 14 13 32 32 H 1.08001 * 119.69244 * 180.25407 * 16 15 14 33 33 H 1.09004 * 109.47407 * 124.72873 * 18 17 16 34 34 H 0.96708 * 114.00246 * 180.02562 * 19 18 17 35 35 H 1.48506 * 109.99834 * 300.00486 * 20 18 17 36 36 H 1.48502 * 110.00011 * 61.31751 * 20 18 17 37 37 H 1.08002 * 120.09677 * 180.29511 * 21 17 16 38 38 H 0.96999 * 125.60353 * 0.02562 * 23 22 21 39 39 H 1.08998 * 113.61544 * 156.34163 * 24 4 2 40 40 H 1.08998 * 113.61815 * 25.43299 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9541 1.0502 0.0000 4 6 2.1012 -1.3052 0.0006 5 1 1.7399 -2.0039 -0.7540 6 6 3.6294 -1.1341 0.0011 7 6 3.5484 -1.1190 1.5367 8 1 3.4006 -0.1240 1.9563 9 7 4.6337 -1.8559 2.1889 10 6 5.0022 -1.5400 3.4463 11 8 4.4340 -0.6428 4.0393 12 6 6.0913 -2.2802 4.1011 13 6 6.5510 -2.0550 5.3596 14 6 7.5983 -2.9751 5.6072 15 6 8.4312 -3.2114 6.7083 16 6 9.3711 -4.1990 6.6489 17 6 9.5182 -4.9675 5.5012 18 6 10.5670 -6.0486 5.4567 19 8 11.5488 -5.7195 4.4719 20 14 11.3841 -6.1905 7.1249 21 6 8.7112 -4.7548 4.4059 22 6 7.7416 -3.7569 4.4440 23 7 6.8095 -3.3155 3.5348 24 6 2.2499 -1.9300 1.3978 25 1 -0.4851 -0.8400 0.0004 26 1 -0.4851 0.8401 -0.0004 27 1 3.9632 -0.1893 -0.4278 28 1 4.1665 -1.9940 -0.3994 29 1 5.0870 -2.5713 1.7159 30 1 6.1835 -1.3080 6.0478 31 1 8.3268 -2.6163 7.6035 32 1 10.0094 -4.3820 7.5007 33 1 10.0988 -6.9987 5.1995 34 1 12.2565 -6.3733 4.3881 35 1 12.0263 -4.9014 7.4872 36 1 10.3792 -6.5637 8.1526 37 1 8.8301 -5.3607 3.5198 38 1 6.6781 -3.6721 2.6424 39 1 2.4085 -3.0082 1.3793 40 1 1.4699 -1.6278 2.0966 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13158378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:42 Heat of formation + Delta-G solvation = -21.879083 kcal Electronic energy + Delta-G solvation = -25078.634291 eV Core-core repulsion = 21246.818296 eV Total energy + Delta-G solvation = -3831.815995 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.84405 -41.74746 -40.46564 -38.96122 -38.37521 -37.00721 -34.92626 -34.53735 -33.43590 -31.31245 -30.57429 -27.85610 -26.80316 -26.37519 -24.49018 -23.37432 -22.69114 -22.04751 -21.37515 -20.46581 -19.54387 -18.44899 -18.31000 -18.08606 -17.94731 -17.38474 -17.12353 -16.60612 -16.53692 -15.92520 -15.78177 -15.46382 -15.27604 -15.13877 -14.85922 -14.79564 -14.46441 -14.34773 -14.05602 -13.63760 -13.49455 -13.37821 -13.14318 -12.79634 -12.30163 -12.28232 -11.93877 -11.88296 -11.76290 -11.45392 -11.07571 -11.03016 -10.71725 -10.34347 -10.25269 -9.47524 -8.95555 -4.89883 -0.50039 0.33863 0.82299 1.33104 1.51641 1.63884 1.69196 1.89343 2.03736 2.06163 2.51608 2.59412 3.30907 3.36391 3.41205 3.48106 3.55558 3.67360 3.82203 3.84496 3.86984 4.11270 4.19114 4.23307 4.30250 4.34572 4.48478 4.56421 4.63006 4.73239 4.75655 4.80423 4.84429 4.91649 4.98813 5.14296 5.22985 5.34301 5.38410 5.43083 5.81568 5.82585 6.17806 6.36132 6.41437 6.87724 6.94975 7.29003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.521 3.479 3 O -0.594 6.594 4 C -0.129 4.129 5 H 0.150 0.850 6 C -0.120 4.120 7 C 0.109 3.891 8 H 0.081 0.919 9 N -0.696 5.696 10 C 0.585 3.415 11 O -0.563 6.563 12 C 0.017 3.983 13 C -0.120 4.120 14 C -0.137 4.137 15 C -0.061 4.061 16 C -0.167 4.167 17 C -0.062 4.062 18 C -0.073 4.073 19 O -0.563 6.563 20 Si 0.772 3.228 21 C -0.099 4.099 22 C 0.112 3.888 23 N -0.556 5.556 24 C -0.121 4.121 25 H 0.420 0.580 26 H 0.405 0.595 27 H 0.066 0.934 28 H 0.132 0.868 29 H 0.416 0.584 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.404 0.596 35 H -0.300 1.300 36 H -0.290 1.290 37 H 0.151 0.849 38 H 0.436 0.564 39 H 0.128 0.872 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -11.670 -5.011 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.307 3.693 3 O -0.475 6.475 4 C -0.151 4.151 5 H 0.168 0.832 6 C -0.158 4.158 7 C 0.004 3.996 8 H 0.099 0.901 9 N -0.347 5.347 10 C 0.372 3.628 11 O -0.441 6.441 12 C -0.093 4.093 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.080 4.080 16 C -0.185 4.185 17 C -0.064 4.064 18 C -0.183 4.183 19 O -0.373 6.373 20 Si 0.679 3.321 21 C -0.120 4.120 22 C 0.001 3.999 23 N -0.163 5.163 24 C -0.160 4.160 25 H 0.251 0.749 26 H 0.236 0.764 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.253 0.747 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.256 0.744 35 H -0.228 1.228 36 H -0.218 1.218 37 H 0.169 0.831 38 H 0.277 0.723 39 H 0.147 0.853 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.929 -9.690 -4.057 10.546 hybrid contribution -0.871 0.410 -0.494 1.082 sum -1.800 -9.280 -4.551 10.492 Atomic orbital electron populations 1.43756 1.06344 1.13866 1.75990 1.20695 0.83534 0.91006 0.74106 1.90766 1.69439 1.35529 1.51763 1.22213 0.96477 0.94795 1.01582 0.83245 1.23289 0.94658 1.04622 0.93244 1.22700 0.87180 0.96128 0.93601 0.90116 1.45699 1.37291 1.38039 1.13705 1.17335 0.81290 0.82070 0.82077 1.90869 1.55747 1.32108 1.65393 1.19944 0.98689 0.95352 0.95299 1.21072 0.97236 1.00833 0.95619 1.18368 1.00288 0.99826 0.95644 1.20524 0.93294 0.96606 0.97530 1.20534 1.01050 0.98557 0.98370 1.19418 0.96450 0.97038 0.93461 1.24749 0.91627 0.97501 1.04452 1.86451 1.39148 1.52605 1.59107 0.94579 0.82414 0.82291 0.72840 1.20067 0.94332 0.97784 0.99791 1.18416 0.93653 0.97879 0.89946 1.41709 1.29214 1.29527 1.15834 1.23408 0.96522 1.01984 0.94093 0.74894 0.76367 0.91476 0.85010 0.74659 0.82881 0.84105 0.86342 0.88129 0.74444 1.22844 1.21757 0.83139 0.72270 0.85337 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 4.38 8.87 -173.54 -1.54 2.84 16 2 C 0.52 0.98 7.36 87.66 0.64 1.63 16 3 O -0.59 -7.88 16.58 -3.01 -0.05 -7.93 16 4 C -0.13 0.76 4.35 -11.01 -0.05 0.71 16 5 H 0.15 -1.94 8.14 -2.39 -0.02 -1.96 16 6 C -0.12 0.47 7.20 31.12 0.22 0.70 16 7 C 0.11 0.07 3.89 45.50 0.18 0.25 16 8 H 0.08 0.83 7.39 -2.39 -0.02 0.81 16 9 N -0.70 1.07 5.35 -443.73 -2.37 -1.30 16 10 C 0.59 3.95 7.80 86.56 0.68 4.62 16 11 O -0.56 -9.15 16.44 -4.16 -0.07 -9.22 16 12 C 0.02 0.09 6.97 39.91 0.28 0.36 16 13 C -0.12 -0.97 10.53 22.54 0.24 -0.74 16 14 C -0.14 -1.04 6.16 -21.36 -0.13 -1.17 16 15 C -0.06 -0.41 10.06 22.30 0.22 -0.19 16 16 C -0.17 -1.08 8.59 22.02 0.19 -0.90 16 17 C -0.06 -0.26 5.39 -19.83 -0.11 -0.37 16 18 C -0.07 0.14 2.78 71.23 0.20 0.34 16 19 O -0.56 1.05 12.80 -148.98 -1.91 -0.85 16 20 Si 0.77 -1.72 29.81 68.60 2.05 0.33 16 21 C -0.10 -0.25 9.69 22.37 0.22 -0.03 16 22 C 0.11 0.46 7.25 39.13 0.28 0.74 16 23 N -0.56 0.43 6.07 -177.18 -1.08 -0.64 16 24 C -0.12 0.69 7.45 31.10 0.23 0.92 16 25 H 0.42 -5.16 8.83 -92.71 -0.82 -5.98 16 26 H 0.41 -2.05 8.93 -92.70 -0.83 -2.87 16 27 H 0.07 0.16 7.43 -2.39 -0.02 0.14 16 28 H 0.13 -1.50 8.12 -2.39 -0.02 -1.52 16 29 H 0.42 -4.00 7.78 -92.71 -0.72 -4.72 16 30 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.14 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.12 0.68 4.81 -2.91 -0.01 0.67 16 33 H 0.10 -0.69 7.96 -2.38 -0.02 -0.71 16 34 H 0.40 -5.03 8.74 -74.05 -0.65 -5.68 16 35 H -0.30 -1.80 7.05 99.48 0.70 -1.10 16 36 H -0.29 -1.03 7.11 99.48 0.71 -0.33 16 37 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 38 H 0.44 -3.92 8.12 -92.71 -0.75 -4.67 16 39 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 40 H 0.07 -0.21 8.09 -2.39 -0.02 -0.23 16 Total: 0.00 -34.01 342.21 -4.25 -38.27 By element: Atomic # 1 Polarization: -25.79 SS G_CDS: -2.58 Total: -28.37 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 3.29 Total: 6.88 kcal Atomic # 7 Polarization: 5.89 SS G_CDS: -4.99 Total: 0.90 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -2.03 Total: -18.00 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.05 Total: 0.33 kcal Total: -34.01 -4.25 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13158378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.388 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds