Wall clock time and date at job start Thu Mar 4 2021 13:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34780 * 1 3 3 O 1.21279 * 120.00034 * 2 1 4 4 C 1.50703 * 119.99852 * 179.97438 * 2 1 3 5 5 H 1.08998 * 112.90483 * 48.75554 * 4 2 1 6 6 C 1.53779 * 113.61086 * 180.02562 * 4 2 1 7 7 C 1.53782 * 87.08025 * 89.12098 * 6 4 2 8 8 H 1.09002 * 113.61052 * 270.79948 * 7 6 4 9 9 N 1.46498 * 113.61542 * 139.97648 * 7 6 4 10 10 C 1.34777 * 119.99828 * 154.72141 * 9 7 6 11 11 O 1.21583 * 119.99943 * 0.28074 * 10 9 7 12 12 C 1.47659 * 120.00027 * 180.27877 * 10 9 7 13 13 C 1.40164 * 119.97079 * 0.02562 * 12 10 9 14 14 C 1.36356 * 120.66539 * 179.97438 * 13 12 10 15 15 C 1.39323 * 120.23794 * 0.02562 * 14 13 12 16 16 N 1.37402 * 133.25321 * 180.02562 * 15 14 13 17 17 C 1.36860 * 109.98253 * 179.97438 * 16 15 14 18 18 C 1.34192 * 109.96899 * 359.97438 * 17 16 15 19 19 C 1.50694 * 126.53654 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47250 * 104.97940 * 19 18 17 21 21 Si 1.86295 * 109.47691 * 344.97263 * 19 18 17 22 22 C 1.40913 * 119.64148 * 359.97438 * 15 14 13 23 23 C 1.39190 * 119.97171 * 179.72607 * 12 10 9 24 24 C 1.53777 * 113.61631 * 277.50065 * 4 2 1 25 25 H 0.96999 * 120.00249 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99617 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.61777 * 334.56922 * 6 4 2 28 28 H 1.08999 * 113.61498 * 203.66417 * 6 4 2 29 29 H 0.97001 * 120.00384 * 335.00588 * 9 7 6 30 30 H 1.07998 * 119.66728 * 359.95575 * 13 12 10 31 31 H 1.08001 * 119.87993 * 179.97438 * 14 13 12 32 32 H 0.97004 * 125.00465 * 359.97438 * 16 15 14 33 33 H 1.08002 * 125.01388 * 179.97438 * 17 16 15 34 34 H 1.09009 * 109.46947 * 224.97387 * 19 18 17 35 35 H 0.96704 * 114.00094 * 179.97438 * 20 19 18 36 36 H 1.48500 * 109.99838 * 60.00223 * 21 19 18 37 37 H 1.48495 * 110.00285 * 181.32321 * 21 19 18 38 38 H 1.08004 * 120.30398 * 0.02562 * 23 12 10 39 39 H 1.09001 * 113.61338 * 156.33215 * 24 4 2 40 40 H 1.09000 * 113.61355 * 25.43478 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 1 1.7401 -2.0038 -0.7540 6 6 3.6295 -1.1341 0.0011 7 6 3.5485 -1.1190 1.5367 8 1 3.4005 -0.1239 1.9564 9 7 4.6336 -1.8560 2.1890 10 6 5.0059 -1.5365 3.4443 11 8 4.4377 -0.6399 4.0372 12 6 6.1038 -2.2752 4.0994 13 6 6.7587 -3.3083 3.4151 14 6 7.7747 -3.9994 4.0063 15 6 8.1749 -3.6856 5.3034 16 7 9.1412 -4.1918 6.1390 17 6 9.1268 -3.5203 7.3314 18 6 8.1739 -2.5757 7.3140 19 6 7.8360 -1.6214 8.4303 20 8 8.3373 -0.3212 8.1136 21 14 8.6141 -2.2180 10.0143 22 6 7.5244 -2.6491 6.0020 23 6 6.4915 -1.9409 5.3937 24 6 2.2500 -1.9300 1.3978 25 1 -0.4850 -0.8400 -0.0004 26 1 -0.4849 0.8400 -0.0004 27 1 3.9633 -0.1893 -0.4278 28 1 4.1654 -1.9946 -0.3993 29 1 5.0870 -2.5713 1.7159 30 1 6.4555 -3.5597 2.4095 31 1 8.2703 -4.7934 3.4675 32 1 9.7445 -4.9180 5.9164 33 1 9.7853 -3.7210 8.1636 34 1 6.7539 -1.5737 8.5525 35 1 8.1553 0.3459 8.7896 36 1 10.0895 -2.2874 9.8608 37 1 8.2620 -1.3028 11.1294 38 1 5.9926 -1.1426 5.9231 39 1 2.4085 -3.0083 1.3792 40 1 1.4699 -1.6278 2.0965 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13287722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:54 Heat of formation + Delta-G solvation = -23.692315 kcal Electronic energy + Delta-G solvation = -25337.838717 eV Core-core repulsion = 21505.944094 eV Total energy + Delta-G solvation = -3831.894623 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.46117 -41.73779 -40.53816 -38.47398 -37.94850 -37.46345 -34.81928 -34.42544 -33.38000 -30.91724 -30.52202 -27.18296 -26.72891 -26.45260 -24.70820 -23.46652 -22.74863 -21.63636 -20.68829 -20.23787 -19.07162 -18.53797 -18.50057 -18.18331 -18.02988 -17.31974 -17.07984 -16.23667 -16.18017 -15.86884 -15.70735 -15.38184 -15.34448 -15.02403 -14.87811 -14.79628 -14.33621 -14.12876 -13.78309 -13.55863 -13.47814 -13.30645 -13.02384 -12.79353 -12.58902 -12.15779 -11.85527 -11.81946 -11.66166 -11.09411 -10.97832 -10.79478 -10.69826 -10.38444 -10.14651 -9.32992 -8.81677 -4.89007 -0.16294 0.20758 1.33089 1.48098 1.54304 1.63816 1.81619 1.96918 2.08864 2.13521 2.54873 2.87149 3.39135 3.44453 3.52388 3.63658 3.71582 3.77680 3.81078 3.89755 4.02621 4.13954 4.25493 4.28354 4.41969 4.52858 4.54981 4.61562 4.70515 4.77771 4.83329 4.87587 4.99872 5.01174 5.10517 5.27806 5.35053 5.45901 5.53318 5.56580 5.84589 5.98107 6.43699 6.51896 6.58409 6.62118 7.19059 7.31480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.521 3.479 3 O -0.596 6.596 4 C -0.129 4.129 5 H 0.151 0.849 6 C -0.119 4.119 7 C 0.107 3.893 8 H 0.072 0.928 9 N -0.697 5.697 10 C 0.558 3.442 11 O -0.594 6.594 12 C -0.179 4.179 13 C -0.064 4.064 14 C -0.123 4.123 15 C 0.112 3.888 16 N -0.570 5.570 17 C 0.080 3.920 18 C -0.183 4.183 19 C -0.068 4.068 20 O -0.565 6.565 21 Si 0.789 3.211 22 C -0.131 4.131 23 C -0.022 4.022 24 C -0.121 4.121 25 H 0.420 0.580 26 H 0.405 0.595 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.419 0.581 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.440 0.560 33 H 0.206 0.794 34 H 0.068 0.932 35 H 0.389 0.611 36 H -0.277 1.277 37 H -0.294 1.294 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -13.228 -1.903 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.306 3.694 3 O -0.476 6.476 4 C -0.151 4.151 5 H 0.169 0.831 6 C -0.157 4.157 7 C 0.002 3.998 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.348 3.652 11 O -0.476 6.476 12 C -0.183 4.183 13 C -0.084 4.084 14 C -0.143 4.143 15 C 0.002 3.998 16 N -0.174 5.174 17 C -0.047 4.047 18 C -0.190 4.190 19 C -0.175 4.175 20 O -0.374 6.374 21 Si 0.691 3.309 22 C -0.135 4.135 23 C -0.042 4.042 24 C -0.160 4.160 25 H 0.251 0.749 26 H 0.236 0.764 27 H 0.083 0.917 28 H 0.152 0.848 29 H 0.258 0.742 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.281 0.719 33 H 0.222 0.778 34 H 0.086 0.914 35 H 0.239 0.761 36 H -0.203 1.203 37 H -0.221 1.221 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.987 -12.296 -1.415 12.416 hybrid contribution -0.412 1.638 -0.133 1.694 sum 0.575 -10.658 -1.548 10.785 Atomic orbital electron populations 1.43748 1.06326 1.13830 1.76068 1.20738 0.83534 0.91069 0.74018 1.90762 1.69482 1.35605 1.51795 1.22223 0.96530 0.94693 1.01609 0.83135 1.23289 0.94581 1.04503 0.93375 1.22594 0.87685 0.95915 0.93595 0.91011 1.45682 1.36999 1.38057 1.14115 1.18606 0.82457 0.82086 0.82048 1.90764 1.57531 1.33575 1.65693 1.19576 1.00748 1.02062 0.95907 1.20912 0.94280 0.92866 1.00321 1.20091 0.99550 1.03149 0.91555 1.18663 0.91984 0.95585 0.93536 1.41716 1.31057 1.33050 1.11586 1.22076 0.98583 0.93923 0.90158 1.19823 1.02164 1.01832 0.95197 1.24600 1.02534 0.84232 1.06118 1.86589 1.81542 1.19802 1.49497 0.94109 0.77623 0.88269 0.70880 1.19200 0.99380 0.99307 0.95633 1.20573 0.93753 0.96344 0.93532 1.23405 0.96535 1.02095 0.93921 0.74878 0.76424 0.91743 0.84813 0.74164 0.81669 0.81692 0.71873 0.77754 0.91378 0.76118 1.20312 1.22075 0.87651 0.85155 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 3.04 8.87 -173.53 -1.54 1.50 16 2 C 0.52 2.01 7.36 87.66 0.64 2.66 16 3 O -0.60 -9.19 16.58 -3.03 -0.05 -9.24 16 4 C -0.13 0.50 4.35 -11.01 -0.05 0.45 16 5 H 0.15 -1.72 8.14 -2.39 -0.02 -1.74 16 6 C -0.12 0.19 7.20 31.12 0.22 0.41 16 7 C 0.11 0.42 3.89 45.50 0.18 0.59 16 8 H 0.07 1.03 7.39 -2.39 -0.02 1.02 16 9 N -0.70 -1.37 5.30 -443.17 -2.35 -3.72 16 10 C 0.56 6.12 7.76 86.73 0.67 6.79 16 11 O -0.59 -12.75 15.93 -3.98 -0.06 -12.82 16 12 C -0.18 -1.35 5.87 -20.09 -0.12 -1.47 16 13 C -0.06 0.09 9.46 22.30 0.21 0.30 16 14 C -0.12 0.33 10.00 22.09 0.22 0.55 16 15 C 0.11 0.20 7.27 39.19 0.28 0.49 16 16 N -0.57 2.14 6.05 -187.48 -1.13 1.00 16 17 C 0.08 -0.12 10.43 82.98 0.87 0.74 16 18 C -0.18 -0.96 5.61 -18.61 -0.10 -1.07 16 19 C -0.07 -0.27 3.05 71.23 0.22 -0.05 16 20 O -0.56 -4.61 12.86 -148.98 -1.92 -6.52 16 21 Si 0.79 -1.65 30.80 68.60 2.11 0.46 16 22 C -0.13 -1.09 6.34 -20.21 -0.13 -1.22 16 23 C -0.02 -0.26 9.64 22.74 0.22 -0.04 16 24 C -0.12 0.38 7.45 31.10 0.23 0.61 16 25 H 0.42 -4.55 8.83 -92.71 -0.82 -5.37 16 26 H 0.40 -1.44 8.93 -92.71 -0.83 -2.27 16 27 H 0.06 0.31 7.43 -2.39 -0.02 0.29 16 28 H 0.13 -1.26 8.12 -2.39 -0.02 -1.28 16 29 H 0.42 -2.79 6.73 -92.71 -0.62 -3.41 16 30 H 0.17 -1.63 6.36 -2.91 -0.02 -1.65 16 31 H 0.17 -1.67 8.06 -2.91 -0.02 -1.70 16 32 H 0.44 -5.00 8.96 -92.70 -0.83 -5.83 16 33 H 0.21 -1.68 6.30 -2.91 -0.02 -1.70 16 34 H 0.07 0.25 7.96 -2.38 -0.02 0.23 16 35 H 0.39 0.07 8.74 -74.05 -0.65 -0.57 16 36 H -0.28 -0.42 7.04 99.48 0.70 0.28 16 37 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 38 H 0.11 1.73 7.64 -2.91 -0.02 1.71 16 39 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 40 H 0.07 -0.02 8.09 -2.39 -0.02 -0.04 16 Total: 0.00 -39.16 342.08 -3.93 -43.09 By element: Atomic # 1 Polarization: -20.94 SS G_CDS: -2.56 Total: -23.50 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 3.57 Total: 9.74 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -5.03 Total: -1.22 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -2.03 Total: -28.58 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.11 Total: 0.46 kcal Total: -39.16 -3.93 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13287722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.397 kcal (2) G-P(sol) polarization free energy of solvation -39.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds