Wall clock time and date at job start Thu Mar 4 2021 13:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34776 * 1 3 3 O 1.21282 * 119.99788 * 2 1 4 4 C 1.50700 * 119.99904 * 179.97438 * 2 1 3 5 5 H 1.08993 * 112.91004 * 311.25189 * 4 2 1 6 6 C 1.53962 * 113.66521 * 82.55599 * 4 2 1 7 7 C 1.53782 * 87.11063 * 139.88647 * 6 4 2 8 8 H 1.09001 * 113.61250 * 220.08565 * 7 6 4 9 9 N 1.46501 * 113.61142 * 89.18830 * 7 6 4 10 10 C 1.34769 * 120.00014 * 107.50467 * 9 7 6 11 11 O 1.21519 * 120.00223 * 359.97438 * 10 9 7 12 12 C 1.48167 * 120.00110 * 179.97438 * 10 9 7 13 13 C 1.39271 * 119.72486 * 179.72617 * 12 10 9 14 14 C 1.38636 * 119.06229 * 179.72795 * 13 12 10 15 15 C 1.38589 * 118.48437 * 0.53271 * 14 13 12 16 16 C 1.50698 * 120.31834 * 179.74935 * 15 14 13 17 17 O 1.42905 * 109.47140 * 64.98213 * 16 15 14 18 18 Si 1.86304 * 109.46709 * 184.97495 * 16 15 14 19 19 C 1.38602 * 119.35062 * 359.72777 * 15 14 13 20 20 N 1.31495 * 120.90551 * 359.97438 * 19 15 14 21 21 C 1.53781 * 87.08260 * 334.63747 * 7 6 4 22 22 H 0.97004 * 119.99936 * 179.97438 * 1 2 3 23 23 H 0.96996 * 120.00241 * 0.02562 * 1 2 3 24 24 H 1.08997 * 113.53543 * 25.33321 * 6 4 2 25 25 H 1.08998 * 113.73879 * 254.46919 * 6 4 2 26 26 H 0.97001 * 119.99973 * 287.49325 * 9 7 6 27 27 H 1.08001 * 120.46957 * 359.97438 * 13 12 10 28 28 H 1.07993 * 120.75704 * 180.23489 * 14 13 12 29 29 H 1.08992 * 109.47512 * 304.97450 * 16 15 14 30 30 H 0.96699 * 114.00231 * 59.99428 * 17 16 15 31 31 H 1.48499 * 110.00093 * 179.97438 * 18 16 15 32 32 H 1.48501 * 110.00216 * 301.32484 * 18 16 15 33 33 H 1.08000 * 119.54491 * 179.97438 * 19 15 14 34 34 H 1.09002 * 113.61445 * 139.98212 * 21 7 6 35 35 H 1.09002 * 113.61408 * 270.79943 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1012 -1.3051 0.0006 5 1 1.7401 -2.0032 0.7557 6 6 2.2520 -1.9323 -1.3974 7 6 3.6850 -2.3111 -0.9875 8 1 4.4166 -2.1782 -1.7845 9 7 3.7825 -3.6198 -0.3364 10 6 4.3304 -4.6606 -0.9943 11 8 4.7431 -4.5137 -2.1278 12 6 4.4295 -5.9841 -0.3356 13 6 4.9915 -7.0572 -1.0228 14 6 5.0826 -8.2880 -0.3913 15 6 4.5980 -8.4049 0.9018 16 6 4.6709 -9.7249 1.6252 17 8 6.0396 -10.0770 1.8369 18 14 3.8055 -9.5809 3.2687 19 6 4.0460 -7.2957 1.5233 20 7 3.9775 -6.1383 0.9030 21 6 3.6296 -1.1340 0.0005 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.4850 0.8400 -0.0004 24 1 2.2075 -1.2048 -2.2079 25 1 1.6038 -2.7925 -1.5646 26 1 3.4529 -3.7372 0.5683 27 1 5.3549 -6.9313 -2.0320 28 1 5.5169 -9.1375 -0.8972 29 1 4.1861 -10.4951 1.0255 30 1 6.5340 -9.4348 2.3644 31 1 3.8698 -10.8763 3.9918 32 1 4.4370 -8.5119 4.0834 33 1 3.6670 -7.3834 2.5308 34 1 4.0931 -1.3498 0.9632 35 1 3.9631 -0.1886 -0.4274 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13287726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:57 Heat of formation + Delta-G solvation = -43.971051 kcal Electronic energy + Delta-G solvation = -20810.206438 eV Core-core repulsion = 17389.422363 eV Total energy + Delta-G solvation = -3420.784075 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03530 -41.37057 -40.17268 -38.55643 -37.97094 -34.76324 -34.49774 -33.49184 -32.92580 -28.31410 -26.96583 -26.77128 -25.03360 -24.01070 -22.35676 -21.97412 -20.30776 -19.40296 -18.71640 -18.34987 -17.77275 -17.72656 -16.81329 -16.64447 -16.52015 -16.25656 -16.09112 -15.94844 -15.41957 -15.22683 -14.68328 -14.46720 -14.36773 -14.22269 -13.62251 -13.47982 -13.35066 -12.94003 -12.62079 -12.13082 -11.78355 -11.64768 -11.45327 -11.06247 -10.94047 -10.67774 -10.66413 -10.65940 -10.39729 -10.10909 -4.91129 -0.59854 0.09154 1.25874 1.51009 1.59095 1.60811 1.86836 1.99035 2.62723 2.65935 2.92925 3.35065 3.35518 3.42574 3.51358 3.64843 3.73417 3.79365 3.91896 3.94268 4.13633 4.26982 4.49115 4.54059 4.61556 4.69530 4.73720 4.85009 4.89972 4.92737 5.00608 5.05326 5.38682 5.46770 5.88571 6.25550 6.43350 6.46746 6.61339 7.02529 7.34333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.522 3.478 3 O -0.595 6.595 4 C -0.129 4.129 5 H 0.145 0.855 6 C -0.123 4.123 7 C 0.115 3.885 8 H 0.093 0.907 9 N -0.679 5.679 10 C 0.573 3.427 11 O -0.565 6.565 12 C 0.065 3.935 13 C -0.115 4.115 14 C -0.053 4.053 15 C -0.139 4.139 16 C -0.079 4.079 17 O -0.545 6.545 18 Si 0.768 3.232 19 C 0.101 3.899 20 N -0.457 5.457 21 C -0.121 4.121 22 H 0.418 0.582 23 H 0.404 0.596 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.422 0.578 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.136 0.864 30 H 0.388 0.612 31 H -0.301 1.301 32 H -0.274 1.274 33 H 0.187 0.813 34 H 0.090 0.910 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.923 -4.591 3.250 8.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.308 3.692 3 O -0.476 6.476 4 C -0.150 4.150 5 H 0.162 0.838 6 C -0.162 4.162 7 C 0.010 3.990 8 H 0.111 0.889 9 N -0.330 5.330 10 C 0.359 3.641 11 O -0.443 6.443 12 C -0.073 4.073 13 C -0.136 4.136 14 C -0.078 4.078 15 C -0.141 4.141 16 C -0.188 4.188 17 O -0.353 6.353 18 Si 0.672 3.328 19 C -0.059 4.059 20 N -0.168 5.168 21 C -0.160 4.160 22 H 0.250 0.750 23 H 0.235 0.765 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.260 0.740 27 H 0.166 0.834 28 H 0.178 0.822 29 H 0.154 0.846 30 H 0.238 0.762 31 H -0.229 1.229 32 H -0.200 1.200 33 H 0.203 0.797 34 H 0.108 0.892 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.571 -3.706 3.348 7.482 hybrid contribution 1.090 -0.423 -0.132 1.177 sum -4.481 -4.129 3.215 6.890 Atomic orbital electron populations 1.43818 1.06485 1.13754 1.76025 1.20847 0.83373 0.91097 0.73920 1.90747 1.69462 1.35413 1.51987 1.22911 0.96213 0.94735 1.01174 0.83765 1.23312 0.96669 1.01098 0.95165 1.21849 0.98528 0.82015 0.96654 0.88886 1.45397 1.60262 1.08197 1.19182 1.18086 0.77193 0.83972 0.84882 1.90805 1.49891 1.84297 1.19276 1.21020 1.00101 0.94206 0.91926 1.22283 0.96913 0.92498 1.01914 1.21743 0.94808 0.97522 0.93764 1.21673 0.98839 0.97716 0.95903 1.25226 0.87903 0.95273 1.10436 1.86621 1.21594 1.51595 1.75464 0.94093 0.88242 0.77467 0.72965 1.23060 0.95637 0.86849 1.00374 1.67514 1.15042 1.26445 1.07807 1.23168 0.94184 0.97962 1.00637 0.75046 0.76464 0.88975 0.88799 0.73959 0.83403 0.82210 0.84588 0.76231 1.22945 1.19976 0.79714 0.89171 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 4.90 8.87 -173.53 -1.54 3.36 16 2 C 0.52 0.69 7.63 87.66 0.67 1.36 16 3 O -0.60 -7.16 16.74 -3.04 -0.05 -7.21 16 4 C -0.13 0.55 4.04 -10.95 -0.04 0.51 16 5 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 6 C -0.12 0.42 7.44 31.18 0.23 0.66 16 7 C 0.12 -0.04 4.32 45.52 0.20 0.16 16 8 H 0.09 0.37 7.47 -2.39 -0.02 0.35 16 9 N -0.68 0.47 5.25 -442.60 -2.33 -1.86 16 10 C 0.57 2.79 7.81 86.88 0.68 3.47 16 11 O -0.56 -6.71 15.92 -3.78 -0.06 -6.77 16 12 C 0.06 0.14 6.75 41.89 0.28 0.42 16 13 C -0.12 -0.08 9.63 22.61 0.22 0.14 16 14 C -0.05 0.16 9.83 22.45 0.22 0.38 16 15 C -0.14 0.67 5.37 -19.69 -0.11 0.57 16 16 C -0.08 0.50 2.82 71.24 0.20 0.71 16 17 O -0.54 1.39 12.84 -148.98 -1.91 -0.52 16 18 Si 0.77 -5.67 29.90 68.60 2.05 -3.62 16 19 C 0.10 -0.46 9.84 84.83 0.83 0.37 16 20 N -0.46 0.42 9.54 -184.91 -1.76 -1.35 16 21 C -0.12 0.13 7.15 31.12 0.22 0.35 16 22 H 0.42 -5.17 8.83 -92.71 -0.82 -5.99 16 23 H 0.40 -2.43 8.93 -92.71 -0.83 -3.26 16 24 H 0.09 -0.16 8.09 -2.39 -0.02 -0.18 16 25 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.42 -1.96 8.03 -92.71 -0.74 -2.71 16 27 H 0.15 0.16 7.64 -2.91 -0.02 0.14 16 28 H 0.16 -0.94 8.06 -2.91 -0.02 -0.96 16 29 H 0.14 -1.15 7.96 -2.39 -0.02 -1.17 16 30 H 0.39 -3.06 8.70 -74.06 -0.64 -3.70 16 31 H -0.30 -0.38 7.11 99.48 0.71 0.33 16 32 H -0.27 1.15 7.01 99.48 0.70 1.85 16 33 H 0.19 -1.77 4.86 -2.91 -0.01 -1.79 16 34 H 0.09 -0.26 8.14 -2.39 -0.02 -0.27 16 35 H 0.09 0.30 7.43 -2.39 -0.02 0.28 16 Total: 0.00 -24.13 306.24 -3.82 -27.95 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -1.82 Total: -19.09 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 3.61 Total: 9.10 kcal Atomic # 7 Polarization: 5.78 SS G_CDS: -5.63 Total: 0.16 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -2.02 Total: -14.50 kcal Atomic # 14 Polarization: -5.67 SS G_CDS: 2.05 Total: -3.62 kcal Total: -24.13 -3.82 -27.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13287726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.020 kcal (2) G-P(sol) polarization free energy of solvation -24.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds