Wall clock time and date at job start Thu Mar 4 2021 13:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34664 * 124.84980 * 2 1 4 4 C 1.36774 * 108.39265 * 179.82889 * 3 2 1 5 5 C 1.47260 * 126.93799 * 180.19569 * 4 3 2 6 6 O 1.21638 * 119.99878 * 180.26590 * 5 4 3 7 7 N 1.34772 * 120.00366 * 0.25821 * 5 4 3 8 8 C 1.46501 * 120.00380 * 180.02562 * 7 5 4 9 9 H 1.09008 * 112.84443 * 336.19740 * 8 7 5 10 10 C 1.53777 * 113.61661 * 107.50433 * 8 7 5 11 11 C 1.53786 * 87.07894 * 89.11554 * 10 8 7 12 12 H 1.08989 * 113.61583 * 270.88394 * 11 10 8 13 13 C 1.50707 * 113.68456 * 139.99111 * 11 10 8 14 14 N 1.34772 * 119.99772 * 82.47192 * 13 11 10 15 15 O 1.21277 * 120.00203 * 262.46199 * 13 11 10 16 16 C 1.53779 * 113.61515 * 205.00523 * 8 7 5 17 17 C 1.46686 * 106.11767 * 0.41460 * 4 3 2 18 18 C 1.34489 * 106.33410 * 359.74157 * 17 4 3 19 19 C 1.50697 * 125.57203 * 179.97438 * 18 17 4 20 20 O 1.42900 * 109.46836 * 210.04418 * 19 18 17 21 21 Si 1.86305 * 109.47214 * 330.04219 * 19 18 17 22 22 H 1.09002 * 109.47391 * 269.69950 * 1 2 3 23 23 H 1.09001 * 109.46813 * 149.70006 * 1 2 3 24 24 H 1.09004 * 109.47041 * 29.70134 * 1 2 3 25 25 H 1.07994 * 125.79933 * 359.97438 * 3 2 1 26 26 H 0.96998 * 119.99870 * 0.02562 * 7 5 4 27 27 H 1.08995 * 113.61531 * 203.66516 * 10 8 7 28 28 H 1.09005 * 113.61132 * 334.57497 * 10 8 7 29 29 H 0.97004 * 120.00187 * 359.97438 * 14 13 11 30 30 H 0.96994 * 120.00031 * 179.97438 * 14 13 11 31 31 H 1.08995 * 113.61896 * 25.43192 * 16 8 7 32 32 H 1.09000 * 113.61618 * 156.33349 * 16 8 7 33 33 H 1.07996 * 126.83412 * 179.77045 * 17 4 3 34 34 H 1.08996 * 109.47456 * 90.04421 * 19 18 17 35 35 H 0.96696 * 114.00109 * 60.00240 * 20 19 18 36 36 H 1.48500 * 109.99586 * 58.68132 * 21 19 18 37 37 H 1.48496 * 109.99888 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 0.0039 5 6 4.7283 1.5958 0.0093 6 8 5.8447 1.1128 0.0075 7 7 4.5734 2.9345 0.0161 8 6 5.7494 3.8081 0.0209 9 1 6.6371 3.3205 0.4241 10 6 5.9917 4.5226 -1.3191 11 6 5.0867 5.6488 -0.7922 12 1 4.0306 5.5021 -1.0181 13 6 5.5739 7.0311 -1.1433 14 7 5.2990 7.5551 -2.3542 15 8 6.2130 7.6720 -0.3362 16 6 5.4823 5.1974 0.6236 17 6 3.5375 -0.7492 -0.0038 18 6 2.2447 -1.1198 -0.0058 19 6 1.7398 -2.5396 -0.0138 20 8 0.4813 -2.5937 -0.6885 21 14 2.9654 -3.6296 -0.8973 22 1 -0.3634 -0.0054 1.0276 23 1 -0.3633 -0.8873 -0.5185 24 1 -0.3633 0.8927 -0.5092 25 1 1.8767 2.1241 -0.0004 26 1 3.6832 3.3197 0.0178 27 1 7.0268 4.8286 -1.4698 28 1 5.5761 3.9939 -2.1770 29 1 4.7879 7.0424 -2.9999 30 1 5.6122 8.4448 -2.5801 31 1 4.6558 5.2138 1.3340 32 1 6.3783 5.6880 1.0039 33 1 4.3981 -1.4017 -0.0068 34 1 1.6174 -2.8876 1.0119 35 1 0.5151 -2.2978 -1.6084 36 1 4.2870 -3.5573 -0.2240 37 1 2.4788 -5.0325 -0.9126 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13287730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:19:59 Heat of formation + Delta-G solvation = -30.607056 kcal Electronic energy + Delta-G solvation = -21558.612233 eV Core-core repulsion = 18111.096186 eV Total energy + Delta-G solvation = -3447.516047 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46880 -41.54047 -40.10074 -38.40488 -37.77644 -34.67116 -34.27897 -33.60708 -31.32739 -27.95636 -27.05501 -26.73460 -26.13063 -23.87749 -22.15776 -21.11355 -20.68821 -20.21082 -19.02385 -18.39236 -17.76452 -17.30433 -16.97730 -16.80711 -16.68283 -16.02037 -15.90071 -15.56961 -15.39887 -15.26865 -15.07022 -14.74372 -14.40588 -14.05338 -13.62857 -13.44873 -13.31220 -13.23261 -13.01028 -12.84434 -12.13683 -12.07547 -11.72113 -11.59056 -11.05703 -10.90664 -10.68149 -10.65046 -10.12302 -9.56019 -9.20672 -4.99039 0.74658 1.03580 1.39699 1.60143 1.64393 1.90397 2.05282 2.22762 2.53175 2.65188 3.30943 3.39660 3.47670 3.55985 3.78547 3.89941 3.95091 3.99953 4.28327 4.35543 4.41232 4.44810 4.54077 4.60846 4.73448 4.78144 4.87264 4.91548 4.95245 4.97603 5.02104 5.13123 5.57209 5.65134 5.89595 5.97636 6.26496 6.48471 6.60762 6.65158 7.34721 7.35941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.421 5.421 3 C 0.079 3.921 4 C -0.261 4.261 5 C 0.591 3.409 6 O -0.597 6.597 7 N -0.694 5.694 8 C 0.119 3.881 9 H 0.080 0.920 10 C -0.126 4.126 11 C -0.125 4.125 12 H 0.151 0.849 13 C 0.520 3.480 14 N -0.838 5.838 15 O -0.597 6.597 16 C -0.121 4.121 17 C -0.168 4.168 18 C -0.015 4.015 19 C -0.033 4.033 20 O -0.544 6.544 21 Si 0.787 3.213 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.110 0.890 25 H 0.214 0.786 26 H 0.416 0.584 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.419 0.581 30 H 0.404 0.596 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.398 0.602 36 H -0.300 1.300 37 H -0.286 1.286 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 1.693 -6.427 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.094 5.094 3 C -0.058 4.058 4 C -0.271 4.271 5 C 0.381 3.619 6 O -0.478 6.478 7 N -0.345 5.345 8 C 0.013 3.987 9 H 0.099 0.901 10 C -0.165 4.165 11 C -0.146 4.146 12 H 0.168 0.832 13 C 0.306 3.694 14 N -0.401 5.401 15 O -0.478 6.478 16 C -0.160 4.160 17 C -0.192 4.192 18 C -0.125 4.125 19 C -0.144 4.144 20 O -0.352 6.352 21 Si 0.692 3.308 22 H 0.091 0.909 23 H 0.136 0.864 24 H 0.128 0.872 25 H 0.230 0.770 26 H 0.254 0.746 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.250 0.750 30 H 0.235 0.765 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.249 0.751 36 H -0.228 1.228 37 H -0.213 1.213 Dipole moment (debyes) X Y Z Total from point charges -9.254 0.673 -5.195 10.634 hybrid contribution -0.025 0.606 0.430 0.743 sum -9.279 1.279 -4.765 10.509 Atomic orbital electron populations 1.22805 0.74183 1.07704 1.04782 1.43736 1.08164 1.04328 1.53190 1.22461 0.88680 0.93414 1.01290 1.20225 0.92355 0.93454 1.21071 1.17710 0.87791 0.82116 0.74233 1.90768 1.28022 1.76206 1.52851 1.45250 1.09638 1.04383 1.75250 1.21704 0.89559 0.90075 0.97391 0.90139 1.23282 1.00144 0.94762 0.98309 1.22876 1.03145 0.89981 0.98573 0.83160 1.20920 0.78166 0.88610 0.81704 1.43822 1.58303 1.21749 1.16229 1.90748 1.42423 1.63659 1.50947 1.23166 1.03631 0.93270 0.95906 1.21726 0.95443 0.93952 1.08082 1.20720 0.90049 0.90023 1.11706 1.24654 0.93661 0.94138 1.01990 1.86429 1.28991 1.88973 1.30823 0.93259 0.73459 0.75389 0.88656 0.90888 0.86417 0.87160 0.76958 0.74616 0.89671 0.88717 0.75013 0.76537 0.88793 0.89409 0.85239 0.86909 0.75092 1.22792 1.21251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.50 10.71 127.77 1.37 0.87 16 2 N -0.42 2.13 3.09 -533.23 -1.65 0.48 16 3 C 0.08 -0.44 10.83 83.92 0.91 0.47 16 4 C -0.26 -0.81 6.29 -19.04 -0.12 -0.93 16 5 C 0.59 4.05 7.81 86.62 0.68 4.73 16 6 O -0.60 -10.49 16.57 -4.15 -0.07 -10.56 16 7 N -0.69 1.34 5.25 -443.45 -2.33 -0.98 16 8 C 0.12 0.04 4.32 45.52 0.20 0.24 16 9 H 0.08 0.55 7.46 -2.38 -0.02 0.53 16 10 C -0.13 0.39 7.43 31.12 0.23 0.62 16 11 C -0.12 0.67 4.02 -11.01 -0.04 0.62 16 12 H 0.15 -1.93 8.14 -2.39 -0.02 -1.95 16 13 C 0.52 0.43 7.63 87.66 0.67 1.10 16 14 N -0.84 5.39 8.87 -173.53 -1.54 3.85 16 15 O -0.60 -7.13 16.74 -3.02 -0.05 -7.18 16 16 C -0.12 0.18 7.15 31.12 0.22 0.40 16 17 C -0.17 -0.89 9.49 23.62 0.22 -0.67 16 18 C -0.02 0.01 6.14 40.98 0.25 0.26 16 19 C -0.03 0.09 2.98 71.24 0.21 0.31 16 20 O -0.54 3.43 9.95 -148.98 -1.48 1.95 16 21 Si 0.79 -1.19 31.29 68.60 2.15 0.96 16 22 H 0.07 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.12 -1.36 4.94 -2.39 -0.01 -1.37 16 24 H 0.11 -1.79 8.13 -2.38 -0.02 -1.81 16 25 H 0.21 -3.23 7.45 -2.91 -0.02 -3.25 16 26 H 0.42 -4.20 7.64 -92.71 -0.71 -4.91 16 27 H 0.08 -0.04 8.10 -2.39 -0.02 -0.06 16 28 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 29 H 0.42 -5.53 8.83 -92.71 -0.82 -6.35 16 30 H 0.40 -2.58 8.93 -92.71 -0.83 -3.40 16 31 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.09 0.33 7.43 -2.39 -0.02 0.32 16 33 H 0.13 1.15 6.67 -2.91 -0.02 1.13 16 34 H 0.11 -0.17 7.96 -2.39 -0.02 -0.19 16 35 H 0.40 -5.57 8.38 -74.06 -0.62 -6.19 16 36 H -0.30 -2.00 6.77 99.48 0.67 -1.33 16 37 H -0.29 -1.14 7.11 99.48 0.71 -0.44 16 Total: 0.00 -32.46 314.95 -1.99 -34.45 By element: Atomic # 1 Polarization: -29.15 SS G_CDS: -1.82 Total: -30.97 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 4.80 Total: 8.01 kcal Atomic # 7 Polarization: 8.87 SS G_CDS: -5.51 Total: 3.35 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.60 Total: -15.79 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.15 Total: 0.96 kcal Total: -32.46 -1.99 -34.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13287730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.841 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds