Wall clock time and date at job start Thu Mar 4 2021 13:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38982 * 119.95736 * 2 1 4 4 O 1.35711 * 119.90975 * 0.02562 * 3 2 1 5 5 C 1.39013 * 120.17719 * 179.97438 * 3 2 1 6 6 C 1.50701 * 119.95654 * 180.02562 * 5 3 2 7 7 O 1.42903 * 109.46874 * 285.00237 * 6 5 3 8 8 Si 1.86298 * 109.47547 * 165.00173 * 6 5 3 9 9 C 1.37685 * 120.09239 * 359.79000 * 5 3 2 10 10 C 1.39756 * 119.90414 * 0.44019 * 9 5 3 11 11 C 1.47606 * 120.08326 * 179.80747 * 10 9 5 12 12 O 1.21587 * 119.99916 * 359.73112 * 11 10 9 13 13 N 1.34778 * 119.99930 * 179.72522 * 11 10 9 14 14 C 1.46499 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.91032 * 23.75105 * 14 13 11 16 16 C 1.53784 * 113.61434 * 155.00095 * 14 13 11 17 17 C 1.53787 * 87.07923 * 89.11404 * 16 14 13 18 18 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 19 19 C 1.50702 * 113.60869 * 139.98154 * 17 16 14 20 20 N 1.34782 * 119.99630 * 179.97438 * 19 17 16 21 21 O 1.21277 * 120.00402 * 0.02562 * 19 17 16 22 22 C 1.53779 * 113.61357 * 252.49697 * 14 13 11 23 23 C 1.37727 * 119.95949 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47321 * 270.02039 * 1 2 3 25 25 H 1.09002 * 109.46692 * 30.02320 * 1 2 3 26 26 H 1.09001 * 109.46739 * 150.01774 * 1 2 3 27 27 H 0.96697 * 113.99944 * 89.99594 * 4 3 2 28 28 H 1.09005 * 109.47170 * 44.99408 * 6 5 3 29 29 H 0.96693 * 113.99913 * 299.99580 * 7 6 5 30 30 H 1.48493 * 110.00154 * 180.02562 * 8 6 5 31 31 H 1.48504 * 109.99841 * 301.31737 * 8 6 5 32 32 H 1.07998 * 120.04921 * 180.23202 * 9 5 3 33 33 H 0.97000 * 119.99785 * 0.02562 * 13 11 10 34 34 H 1.09004 * 113.61451 * 334.56890 * 16 14 13 35 35 H 1.08994 * 113.61477 * 203.66192 * 16 14 13 36 36 H 0.97004 * 119.99697 * 359.97438 * 20 19 17 37 37 H 0.96996 * 119.99727 * 179.97438 * 20 19 17 38 38 H 1.09006 * 113.61307 * 156.33848 * 22 14 13 39 39 H 1.08999 * 113.69146 * 25.44334 * 22 14 13 40 40 H 1.07997 * 120.03781 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3779 0.0005 5 6 3.5911 1.2095 0.0005 6 6 4.3386 2.5180 0.0011 7 8 4.2725 3.1049 -1.3002 8 14 6.1197 2.2157 0.4563 9 6 4.2860 0.0209 0.0054 10 6 3.5918 -1.1921 0.0006 11 6 4.3329 -2.4687 0.0015 12 8 5.5487 -2.4658 0.0016 13 7 3.6617 -3.6374 0.0024 14 6 4.3972 -4.9044 0.0039 15 1 5.4049 -4.8097 0.4086 16 6 3.6017 -6.0778 0.6002 17 6 3.0631 -6.3306 -0.8179 18 1 2.1512 -5.7778 -1.0436 19 6 2.9673 -7.7915 -1.1755 20 7 2.5103 -8.1596 -2.3888 21 8 3.3006 -8.6358 -0.3713 22 6 4.3404 -5.6512 -1.3392 23 6 2.1948 -1.1932 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 1.3226 2.7178 0.8841 28 1 3.8875 3.1939 0.7277 29 1 4.6565 2.5573 -1.9985 30 1 6.8675 3.4986 0.4610 31 1 6.2005 1.5764 1.7942 32 1 5.3660 0.0258 0.0096 33 1 2.6917 -3.6397 0.0021 34 1 2.8343 -5.7690 1.3101 35 1 4.2303 -6.8838 0.9787 36 1 2.2426 -7.4842 -3.0317 37 1 2.4490 -9.0998 -2.6192 38 1 5.1709 -6.3407 -1.4908 39 1 4.1696 -4.9993 -2.1959 40 1 1.6547 -2.1285 0.0014 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13287732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:20:01 Heat of formation + Delta-G solvation = -103.867946 kcal Electronic energy + Delta-G solvation = -25029.196569 eV Core-core repulsion = 21197.021269 eV Total energy + Delta-G solvation = -3832.175299 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92885 -41.29244 -40.23582 -38.56297 -37.83398 -37.44697 -34.71763 -34.40209 -33.91044 -31.66365 -27.98037 -27.54888 -26.78909 -26.73394 -24.80047 -22.36252 -21.94483 -21.63779 -20.29637 -19.53682 -18.93851 -18.35431 -18.02273 -17.71718 -17.23029 -16.84778 -16.48127 -16.21899 -16.08293 -15.89844 -15.56943 -15.37246 -15.20751 -14.71759 -14.52479 -14.27519 -14.18610 -13.88057 -13.63524 -13.34919 -13.26333 -12.94226 -12.85999 -12.77182 -12.33532 -12.19915 -11.73846 -11.62839 -11.57130 -11.12644 -10.91468 -10.65170 -10.45600 -10.20606 -9.95016 -9.63831 -5.04684 -0.38616 0.09411 1.21958 1.54367 1.59226 1.64030 1.86145 1.96454 2.57393 2.64964 3.12972 3.37561 3.39270 3.45967 3.55489 3.59198 3.75464 3.78034 3.93533 4.05316 4.18483 4.28528 4.34584 4.44416 4.58791 4.63832 4.72543 4.74204 4.80388 4.82550 4.89024 4.95422 5.05274 5.06876 5.11703 5.22611 5.34605 5.50784 5.61635 5.89255 6.43996 6.48395 6.70807 6.72510 7.12197 7.35648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C 0.153 3.847 4 O -0.497 6.497 5 C -0.159 4.159 6 C -0.051 4.051 7 O -0.548 6.548 8 Si 0.743 3.257 9 C -0.056 4.056 10 C -0.149 4.149 11 C 0.564 3.436 12 O -0.571 6.571 13 N -0.691 5.691 14 C 0.119 3.881 15 H 0.090 0.910 16 C -0.122 4.122 17 C -0.129 4.129 18 H 0.149 0.851 19 C 0.520 3.480 20 N -0.839 5.839 21 O -0.597 6.597 22 C -0.126 4.126 23 C -0.053 4.053 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.409 0.591 28 H 0.112 0.888 29 H 0.392 0.608 30 H -0.289 1.289 31 H -0.291 1.291 32 H 0.141 0.859 33 H 0.417 0.583 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.418 0.582 37 H 0.404 0.596 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 -0.656 -3.336 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C 0.107 3.893 4 O -0.310 6.310 5 C -0.160 4.160 6 C -0.163 4.163 7 O -0.356 6.356 8 Si 0.649 3.351 9 C -0.074 4.074 10 C -0.152 4.152 11 C 0.352 3.648 12 O -0.451 6.451 13 N -0.344 5.344 14 C 0.013 3.987 15 H 0.108 0.892 16 C -0.160 4.160 17 C -0.150 4.150 18 H 0.167 0.833 19 C 0.306 3.694 20 N -0.402 5.402 21 O -0.477 6.477 22 C -0.165 4.165 23 C -0.072 4.072 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.269 0.731 28 H 0.129 0.871 29 H 0.242 0.758 30 H -0.216 1.216 31 H -0.217 1.217 32 H 0.158 0.842 33 H 0.256 0.744 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.250 0.750 37 H 0.234 0.766 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.330 -0.461 -2.431 5.876 hybrid contribution -0.811 0.082 0.401 0.908 sum -6.141 -0.379 -2.030 6.479 Atomic orbital electron populations 1.20768 0.88344 1.04197 1.03571 1.20446 0.98288 0.91756 1.01663 1.18512 0.88801 0.85938 0.96021 1.84736 1.75527 1.35831 1.34907 1.20617 0.94247 0.95682 1.05472 1.24810 1.09002 0.93042 0.89399 1.86510 1.84826 1.47653 1.16564 0.93811 0.76192 0.80743 0.84305 1.21003 1.00030 0.90664 0.95704 1.19771 0.94297 0.92504 1.08622 1.18328 0.86796 0.84337 0.75316 1.90806 1.15109 1.87979 1.51197 1.45391 1.10788 1.03901 1.74282 1.21765 0.96967 0.82509 0.97440 0.89192 1.23180 1.00277 0.96782 0.95792 1.22917 1.01766 0.91529 0.98780 0.83322 1.20930 0.75013 0.91797 0.81679 1.43842 1.67131 1.13007 1.16204 1.90751 1.51077 1.54745 1.51175 1.23292 0.96278 0.98664 0.98262 1.21383 0.91653 0.99022 0.95095 0.89834 0.91392 0.89353 0.73068 0.87066 0.75830 1.21648 1.21728 0.84166 0.74445 0.88763 0.89196 0.75044 0.76559 0.89410 0.88622 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.90 9.78 71.24 0.70 1.59 16 2 C -0.12 0.52 5.89 -19.81 -0.12 0.40 16 3 C 0.15 -0.12 6.66 22.63 0.15 0.04 16 4 O -0.50 0.56 11.84 -90.32 -1.07 -0.51 16 5 C -0.16 -0.05 5.27 -19.81 -0.10 -0.15 16 6 C -0.05 -0.04 2.37 71.24 0.17 0.13 16 7 O -0.55 -1.24 12.88 -148.98 -1.92 -3.16 16 8 Si 0.74 1.01 29.91 68.60 2.05 3.06 16 9 C -0.06 -0.05 8.20 22.51 0.18 0.14 16 10 C -0.15 0.16 5.87 -20.08 -0.12 0.04 16 11 C 0.56 0.82 7.76 86.72 0.67 1.50 16 12 O -0.57 -5.69 15.94 -3.99 -0.06 -5.75 16 13 N -0.69 3.74 5.21 -443.12 -2.31 1.43 16 14 C 0.12 -0.37 4.32 45.52 0.20 -0.17 16 15 H 0.09 0.19 7.47 -2.39 -0.02 0.18 16 16 C -0.12 0.46 7.15 31.12 0.22 0.69 16 17 C -0.13 0.90 4.03 -11.01 -0.04 0.86 16 18 H 0.15 -2.09 8.14 -2.39 -0.02 -2.11 16 19 C 0.52 -0.19 7.63 87.66 0.67 0.48 16 20 N -0.84 6.05 8.87 -173.53 -1.54 4.51 16 21 O -0.60 -6.40 16.74 -3.02 -0.05 -6.45 16 22 C -0.13 0.71 7.43 31.12 0.23 0.94 16 23 C -0.05 0.33 9.18 22.50 0.21 0.54 16 24 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H 0.07 -0.36 7.52 -2.39 -0.02 -0.37 16 26 H 0.09 -0.98 8.08 -2.39 -0.02 -1.00 16 27 H 0.41 -3.83 9.06 -74.06 -0.67 -4.50 16 28 H 0.11 0.04 7.82 -2.38 -0.02 0.02 16 29 H 0.39 -2.02 8.70 -74.06 -0.64 -2.66 16 30 H -0.29 -2.24 7.11 99.48 0.71 -1.53 16 31 H -0.29 -2.09 7.11 99.48 0.71 -1.38 16 32 H 0.14 0.15 4.69 -2.91 -0.01 0.14 16 33 H 0.42 -5.15 6.72 -92.71 -0.62 -5.77 16 34 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.09 0.13 7.43 -2.39 -0.02 0.11 16 36 H 0.42 -5.80 8.83 -92.71 -0.82 -6.62 16 37 H 0.40 -2.83 8.93 -92.71 -0.83 -3.66 16 38 H 0.09 -0.27 8.09 -2.38 -0.02 -0.29 16 39 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.17 -2.31 6.39 -2.91 -0.02 -2.33 16 Total: 0.00 -29.59 339.47 -4.28 -33.87 By element: Atomic # 1 Polarization: -31.63 SS G_CDS: -2.39 Total: -34.02 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 3.02 Total: 7.01 kcal Atomic # 7 Polarization: 9.80 SS G_CDS: -3.85 Total: 5.95 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -3.10 Total: -15.87 kcal Atomic # 14 Polarization: 1.01 SS G_CDS: 2.05 Total: 3.06 kcal Total: -29.59 -4.28 -33.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13287732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.998 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds