Wall clock time and date at job start Thu Mar 4 2021 13:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21279 * 120.00012 * 2 1 4 4 C 1.50698 * 120.00073 * 180.02562 * 2 1 3 5 5 H 1.09004 * 112.84567 * 311.19583 * 4 2 1 6 6 C 1.53780 * 113.69220 * 82.46500 * 4 2 1 7 7 C 1.53778 * 87.07931 * 139.99378 * 6 4 2 8 8 H 1.09004 * 113.68736 * 220.00548 * 7 6 4 9 9 N 1.46499 * 113.61456 * 89.12162 * 7 6 4 10 10 C 1.34773 * 120.00478 * 107.49884 * 9 7 6 11 11 O 1.21595 * 119.99894 * 359.97438 * 10 9 7 12 12 C 1.47555 * 120.00144 * 179.97438 * 10 9 7 13 13 C 1.39840 * 120.00255 * 179.97438 * 12 10 9 14 14 C 1.36552 * 119.99857 * 180.02562 * 13 12 10 15 15 C 1.39818 * 120.00436 * 359.97438 * 14 13 12 16 16 C 1.47564 * 120.00122 * 179.97438 * 15 14 13 17 17 C 1.34986 * 125.27555 * 179.97438 * 16 15 14 18 18 C 1.37804 * 114.69861 * 180.02562 * 17 16 15 19 19 C 1.33744 * 115.07932 * 0.02562 * 18 17 16 20 20 C 1.50704 * 125.11383 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47296 * 300.00116 * 20 19 18 22 22 Si 1.86299 * 109.46714 * 180.02562 * 20 19 18 23 23 S 1.75853 * 109.76495 * 0.02562 * 19 18 17 24 24 C 1.39824 * 120.00136 * 0.27740 * 15 14 13 25 25 C 1.36564 * 120.00107 * 359.48038 * 24 15 14 26 26 C 1.53774 * 87.08339 * 334.56607 * 7 6 4 27 27 H 0.96998 * 120.00423 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99801 * 0.02562 * 1 2 3 29 29 H 1.08994 * 113.61268 * 25.44058 * 6 4 2 30 30 H 1.09004 * 113.61194 * 254.54245 * 6 4 2 31 31 H 0.97000 * 119.99291 * 287.49291 * 9 7 6 32 32 H 1.07997 * 119.99593 * 0.02562 * 13 12 10 33 33 H 1.08004 * 119.99780 * 180.02562 * 14 13 12 34 34 H 1.07998 * 122.65113 * 0.06194 * 17 16 15 35 35 H 1.07997 * 122.45661 * 180.27353 * 18 17 16 36 36 H 1.08999 * 109.47043 * 60.00156 * 20 19 18 37 37 H 0.96700 * 113.99904 * 300.00451 * 21 20 19 38 38 H 1.48497 * 110.00017 * 58.68413 * 22 20 19 39 39 H 1.48498 * 109.99912 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.99794 * 179.72428 * 24 15 14 41 41 H 1.07992 * 120.00235 * 180.25951 * 25 24 15 42 42 H 1.09004 * 113.61615 * 139.98388 * 26 7 6 43 43 H 1.08997 * 113.61729 * 270.88875 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3051 -0.0006 5 1 1.7399 -2.0027 0.7550 6 6 2.2503 -1.9319 -1.3969 7 6 3.6827 -2.3126 -0.9868 8 1 4.4154 -2.1827 -1.7833 9 7 3.7781 -3.6206 -0.3339 10 6 4.3240 -4.6634 -0.9904 11 8 4.7369 -4.5187 -2.1249 12 6 4.4206 -5.9806 -0.3325 13 6 4.9865 -7.0627 -1.0138 14 6 5.0754 -8.2818 -0.4051 15 6 4.6011 -8.4480 0.8996 16 6 4.6967 -9.7656 1.5572 17 6 4.2748 -10.0447 2.8087 18 6 4.4715 -11.3498 3.2050 19 6 5.0492 -12.1385 2.2923 20 6 5.3691 -13.5983 2.4861 21 8 6.2662 -13.7472 3.5884 22 14 6.1669 -14.2694 0.9421 23 16 5.3804 -11.2152 0.8327 24 6 4.0305 -7.3674 1.5791 25 6 3.9460 -6.1469 0.9723 26 6 3.6295 -1.1341 -0.0005 27 1 -0.4851 -0.8400 0.0004 28 1 -0.4850 0.8401 -0.0004 29 1 2.2069 -1.2056 -2.2084 30 1 1.6002 -2.7913 -1.5614 31 1 3.4485 -3.7360 0.5711 32 1 5.3532 -6.9342 -2.0215 33 1 5.5129 -9.1174 -0.9312 34 1 3.8186 -9.3039 3.4486 35 1 4.1770 -11.7102 4.1795 36 1 4.4500 -14.1479 2.6889 37 1 7.1072 -13.2831 3.4766 38 1 7.4045 -13.5074 0.6375 39 1 6.4868 -15.7085 1.1200 40 1 3.6601 -7.4970 2.5853 41 1 3.5091 -5.3112 1.4986 42 1 4.0930 -1.3492 0.9624 43 1 3.9632 -0.1896 -0.4303 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13308390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:20:12 Heat of formation + Delta-G solvation = -19.703480 kcal Electronic energy + Delta-G solvation = -27445.611892 eV Core-core repulsion = 23356.478495 eV Total energy + Delta-G solvation = -4089.133397 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.102 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84223 -40.93724 -39.89518 -39.11226 -38.42943 -37.45949 -34.76354 -34.48253 -33.28182 -32.17633 -30.47750 -27.81386 -26.81813 -26.76139 -24.74742 -23.95047 -23.44374 -22.27371 -21.82847 -20.32822 -20.26102 -19.22920 -18.78466 -18.28359 -17.73984 -17.68596 -17.08348 -16.63938 -16.36625 -16.28637 -16.15846 -16.13741 -15.80077 -15.58975 -15.29448 -15.06422 -14.70470 -14.45595 -14.38118 -14.23377 -13.79529 -13.66989 -13.61641 -13.39688 -13.21177 -13.09390 -12.90792 -12.53403 -12.41577 -12.07058 -11.75456 -11.62002 -11.50397 -11.15428 -10.92358 -10.86670 -10.65388 -10.63940 -10.17302 -10.15503 -9.53735 -9.01320 -5.08409 -0.87249 0.26705 0.36776 0.40727 0.77936 1.21103 1.52865 1.56317 1.60170 1.84938 1.96510 1.97755 2.64003 2.84672 3.31075 3.36374 3.42483 3.44682 3.65672 3.69482 3.76191 3.78223 3.86786 3.92951 4.22518 4.27552 4.33869 4.42838 4.53206 4.55884 4.58361 4.63925 4.71485 4.77598 4.86791 4.93282 4.95023 5.03411 5.05894 5.13149 5.24981 5.31160 5.34733 5.49810 5.50439 5.75848 5.89069 6.37503 6.44217 6.48022 7.12237 7.35265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.520 3.480 3 O -0.596 6.596 4 C -0.127 4.127 5 H 0.150 0.850 6 C -0.126 4.126 7 C 0.117 3.883 8 H 0.086 0.914 9 N -0.691 5.691 10 C 0.561 3.439 11 O -0.579 6.579 12 C -0.150 4.150 13 C -0.064 4.064 14 C -0.129 4.129 15 C 0.007 3.993 16 C -0.159 4.159 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.219 4.219 20 C -0.033 4.033 21 O -0.539 6.539 22 Si 0.708 3.292 23 S 0.121 5.879 24 C -0.109 4.109 25 C -0.065 4.065 26 C -0.121 4.121 27 H 0.418 0.582 28 H 0.404 0.596 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.388 0.612 38 H -0.267 1.267 39 H -0.273 1.273 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.095 0.905 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 -2.956 4.279 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.306 3.694 3 O -0.477 6.477 4 C -0.148 4.148 5 H 0.167 0.833 6 C -0.165 4.165 7 C 0.012 3.988 8 H 0.105 0.895 9 N -0.343 5.343 10 C 0.350 3.650 11 O -0.460 6.460 12 C -0.153 4.153 13 C -0.083 4.083 14 C -0.148 4.148 15 C 0.005 3.995 16 C -0.276 4.276 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.337 4.337 20 C -0.145 4.145 21 O -0.348 6.348 22 Si 0.611 3.389 23 S 0.388 5.612 24 C -0.128 4.128 25 C -0.084 4.084 26 C -0.160 4.160 27 H 0.250 0.750 28 H 0.235 0.765 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.257 0.743 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.185 0.815 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.237 0.763 38 H -0.193 1.193 39 H -0.198 1.198 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.113 0.887 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.830 -3.406 1.956 6.225 hybrid contribution -0.204 0.699 2.115 2.237 sum -5.034 -2.707 4.071 7.018 Atomic orbital electron populations 1.43829 1.06517 1.13740 1.76032 1.20906 0.83368 0.91215 0.73933 1.90751 1.69460 1.35498 1.51964 1.22899 0.96169 0.94686 1.01087 0.83256 1.23288 0.96938 1.01055 0.95250 1.21766 0.98175 0.82316 0.96588 0.89534 1.45392 1.61626 1.08320 1.18945 1.18480 0.76552 0.84816 0.85158 1.90799 1.49976 1.85019 1.20173 1.19977 1.05694 0.93106 0.96530 1.20941 0.95511 0.91720 1.00094 1.21022 1.01372 0.97831 0.94599 1.18468 0.96916 0.90962 0.93179 1.23188 1.08972 0.96641 0.98839 1.20641 1.01496 0.97558 0.94914 1.20196 0.99783 0.92951 1.01132 1.25089 1.09354 1.00977 0.98244 1.24448 0.98835 0.92195 0.99062 1.86600 1.30993 1.75904 1.41256 0.94479 0.84413 0.79398 0.80594 1.84238 1.59539 1.00894 1.16523 1.21208 0.98998 0.91166 1.01447 1.21275 0.96161 0.98640 0.92315 1.23173 0.94161 0.97846 1.00771 0.75042 0.76522 0.89453 0.88764 0.74328 0.85404 0.84969 0.81505 0.82834 0.84262 0.76289 1.19260 1.19814 0.82113 0.81665 0.88680 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.83 8.87 -173.53 -1.54 4.29 16 2 C 0.52 0.03 7.63 87.66 0.67 0.70 16 3 O -0.60 -6.60 16.74 -3.03 -0.05 -6.65 16 4 C -0.13 0.81 4.02 -11.01 -0.04 0.76 16 5 H 0.15 -2.02 8.14 -2.38 -0.02 -2.04 16 6 C -0.13 0.57 7.43 31.12 0.23 0.80 16 7 C 0.12 -0.21 4.32 45.51 0.20 -0.01 16 8 H 0.09 0.34 7.46 -2.39 -0.02 0.32 16 9 N -0.69 2.86 5.21 -443.19 -2.31 0.55 16 10 C 0.56 1.83 7.76 86.70 0.67 2.50 16 11 O -0.58 -7.38 15.93 -4.02 -0.06 -7.45 16 12 C -0.15 -0.01 5.88 -20.05 -0.12 -0.13 16 13 C -0.06 -0.16 9.53 22.26 0.21 0.05 16 14 C -0.13 -0.07 9.54 22.26 0.21 0.14 16 15 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 16 C -0.16 0.21 6.37 23.98 0.15 0.36 16 17 C -0.12 0.42 9.64 21.42 0.21 0.62 16 18 C -0.11 0.27 10.00 21.15 0.21 0.48 16 19 C -0.22 0.36 5.73 24.67 0.14 0.50 16 20 C -0.03 0.07 2.96 71.24 0.21 0.28 16 21 O -0.54 -0.26 12.86 -148.98 -1.92 -2.17 16 22 Si 0.71 -1.22 30.96 68.60 2.12 0.90 16 23 S 0.12 -0.13 19.46 -56.49 -1.10 -1.23 16 24 C -0.11 0.64 9.48 22.26 0.21 0.85 16 25 C -0.07 0.43 9.48 22.26 0.21 0.64 16 26 C -0.12 0.36 7.15 31.12 0.22 0.58 16 27 H 0.42 -5.69 8.83 -92.71 -0.82 -6.51 16 28 H 0.40 -2.76 8.93 -92.71 -0.83 -3.59 16 29 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 30 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 31 H 0.42 -4.82 6.71 -92.71 -0.62 -5.44 16 32 H 0.13 0.56 7.64 -2.91 -0.02 0.54 16 33 H 0.13 -0.12 7.26 -2.91 -0.02 -0.14 16 34 H 0.17 -1.47 6.88 -2.91 -0.02 -1.49 16 35 H 0.15 -0.66 8.06 -2.91 -0.02 -0.68 16 36 H 0.14 -0.64 7.96 -2.39 -0.02 -0.66 16 37 H 0.39 -1.79 8.70 -74.06 -0.64 -2.43 16 38 H -0.27 -0.68 7.11 99.48 0.71 0.03 16 39 H -0.27 -1.23 7.11 99.48 0.71 -0.52 16 40 H 0.16 -1.85 6.74 -2.91 -0.02 -1.87 16 41 H 0.17 -2.41 6.38 -2.91 -0.02 -2.43 16 42 H 0.09 -0.55 8.14 -2.38 -0.02 -0.57 16 43 H 0.09 0.20 7.43 -2.39 -0.02 0.18 16 Total: 0.00 -27.74 378.55 -3.13 -30.87 By element: Atomic # 1 Polarization: -26.39 SS G_CDS: -1.76 Total: -28.14 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 3.48 Total: 9.02 kcal Atomic # 7 Polarization: 8.69 SS G_CDS: -3.85 Total: 4.84 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -2.03 Total: -16.27 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.12 Total: 0.90 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.10 Total: -1.23 kcal Total: -27.74 -3.13 -30.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13308390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.166 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds