Wall clock time and date at job start Thu Mar 4 2021 13:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37783 * 119.85172 * 2 1 4 4 C 1.39701 * 119.90855 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.19532 * 179.97438 * 4 3 2 6 6 O 1.21589 * 120.00071 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99870 * 0.02562 * 5 4 3 8 8 C 1.46497 * 120.00126 * 180.02562 * 7 5 4 9 9 H 1.09002 * 112.84935 * 25.32833 * 8 7 5 10 10 C 1.53786 * 113.61643 * 156.52505 * 8 7 5 11 11 C 1.53783 * 87.08050 * 140.06125 * 10 8 7 12 12 H 1.09000 * 113.61254 * 219.93295 * 11 10 8 13 13 C 1.50702 * 113.61044 * 89.12049 * 11 10 8 14 14 N 1.34775 * 120.00040 * 180.02562 * 13 11 10 15 15 O 1.21285 * 120.00081 * 359.97438 * 13 11 10 16 16 C 1.53781 * 113.61305 * 254.13352 * 8 7 5 17 17 C 1.40142 * 119.61646 * 0.24940 * 4 3 2 18 18 O 1.35653 * 120.14966 * 179.72635 * 17 4 3 19 19 C 1.38712 * 119.69906 * 359.49499 * 17 4 3 20 20 C 1.50693 * 119.96058 * 180.27452 * 19 17 4 21 21 O 1.42900 * 109.47287 * 285.23575 * 20 19 17 22 22 Si 1.86301 * 109.47258 * 165.23442 * 20 19 17 23 23 C 1.38050 * 120.08050 * 0.50932 * 19 17 4 24 24 H 1.08998 * 109.47327 * 90.00160 * 1 2 3 25 25 H 1.08997 * 109.47110 * 210.00338 * 1 2 3 26 26 H 1.09001 * 109.46880 * 330.00206 * 1 2 3 27 27 H 1.08001 * 120.04299 * 359.97438 * 3 2 1 28 28 H 0.97006 * 119.99816 * 359.97438 * 7 5 4 29 29 H 1.08992 * 113.61675 * 254.61383 * 10 8 7 30 30 H 1.09005 * 113.61030 * 25.43033 * 10 8 7 31 31 H 0.97000 * 119.99731 * 359.97438 * 14 13 11 32 32 H 0.97000 * 120.00347 * 179.97438 * 14 13 11 33 33 H 1.08999 * 113.61567 * 334.48111 * 16 8 7 34 34 H 1.08998 * 113.61196 * 105.38466 * 16 8 7 35 35 H 0.96698 * 114.00287 * 90.00475 * 18 17 4 36 36 H 1.09004 * 109.47290 * 45.23284 * 20 19 17 37 37 H 0.96702 * 114.00146 * 299.99729 * 21 20 19 38 38 H 1.48499 * 109.99779 * 58.68340 * 22 20 19 39 39 H 1.48504 * 109.99753 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.80301 * 179.76694 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5899 1.1964 0.0005 5 6 4.3306 2.4723 0.0000 6 8 5.5465 2.4694 0.0000 7 7 3.6596 3.6411 -0.0005 8 6 4.3951 4.9081 -0.0017 9 1 5.3926 4.8180 -0.4317 10 6 3.5864 6.0894 -0.5635 11 6 4.2042 6.9430 0.5566 12 1 3.5028 7.6444 1.0084 13 6 5.5113 7.5877 0.1730 14 7 6.1653 8.3644 1.0593 15 8 5.9751 7.4069 -0.9330 16 6 4.3717 5.6351 1.3532 17 6 4.2837 -0.0212 -0.0042 18 8 5.6401 -0.0325 -0.0094 19 6 3.5770 -1.2148 0.0012 20 6 4.3171 -2.5275 0.0024 21 8 4.8553 -2.7721 -1.2986 22 14 3.1440 -3.9014 0.4574 23 6 2.1966 -1.2017 0.0006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6511 2.1293 -0.0004 28 1 2.6895 3.6434 -0.0009 29 1 3.8943 6.3927 -1.5640 30 1 2.5076 5.9623 -0.4728 31 1 5.7945 8.5087 1.9439 32 1 7.0067 8.7791 0.8125 33 1 3.5072 5.3848 1.9682 34 1 5.3131 5.5720 1.8989 35 1 6.0368 -0.0374 0.8725 36 1 5.1283 -2.4867 0.7293 37 1 4.1886 -2.8211 -1.9973 38 1 2.0166 -3.9472 -0.5080 39 1 3.8617 -5.2015 0.4615 40 1 1.6509 -2.1337 0.0010 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_13422088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:20:18 Heat of formation + Delta-G solvation = -101.762650 kcal Electronic energy + Delta-G solvation = -25239.371601 eV Core-core repulsion = 21407.287594 eV Total energy + Delta-G solvation = -3832.084007 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97413 -41.37023 -39.99212 -38.38240 -38.01828 -37.73851 -34.86294 -34.52948 -33.05552 -32.57107 -27.59820 -27.28473 -26.78294 -26.74171 -24.91546 -22.81283 -21.97259 -21.55826 -20.35300 -19.65899 -18.49258 -18.35191 -18.04111 -17.83304 -17.38686 -16.87644 -16.76694 -16.14471 -16.07736 -15.90184 -15.62132 -15.53037 -15.06389 -14.88155 -14.43123 -14.36242 -14.16234 -13.59023 -13.54651 -13.39179 -13.27588 -13.06212 -12.85760 -12.52287 -12.25075 -11.87519 -11.83127 -11.71939 -11.67008 -11.05896 -10.98309 -10.71338 -10.53391 -10.27340 -10.01032 -9.50055 -4.95281 -0.35099 0.08077 1.24944 1.52772 1.55250 1.69418 1.93743 2.06768 2.53040 2.56047 3.16649 3.33157 3.37350 3.41983 3.52881 3.60527 3.73664 3.79001 3.88075 4.12215 4.19359 4.25997 4.38227 4.50050 4.55604 4.63579 4.68181 4.78605 4.83286 4.86554 4.91459 4.97771 4.99495 5.07707 5.19641 5.26825 5.43619 5.47382 5.69459 5.83213 6.42409 6.45535 6.46608 6.73107 7.15903 7.30175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.058 4.058 4 C -0.181 4.181 5 C 0.553 3.447 6 O -0.570 6.570 7 N -0.699 5.699 8 C 0.110 3.890 9 H 0.070 0.930 10 C -0.120 4.120 11 C -0.129 4.129 12 H 0.151 0.849 13 C 0.521 3.479 14 N -0.837 5.837 15 O -0.596 6.596 16 C -0.119 4.119 17 C 0.162 3.838 18 O -0.494 6.494 19 C -0.154 4.154 20 C -0.087 4.087 21 O -0.548 6.548 22 Si 0.789 3.211 23 C -0.080 4.080 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.163 0.837 28 H 0.417 0.583 29 H 0.063 0.937 30 H 0.134 0.866 31 H 0.420 0.580 32 H 0.405 0.595 33 H 0.130 0.870 34 H 0.066 0.934 35 H 0.401 0.599 36 H 0.113 0.887 37 H 0.383 0.617 38 H -0.267 1.267 39 H -0.306 1.306 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 2.691 8.774 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.077 4.077 4 C -0.184 4.184 5 C 0.341 3.659 6 O -0.449 6.449 7 N -0.352 5.352 8 C 0.004 3.996 9 H 0.089 0.911 10 C -0.158 4.158 11 C -0.151 4.151 12 H 0.168 0.832 13 C 0.306 3.694 14 N -0.400 5.400 15 O -0.477 6.477 16 C -0.158 4.158 17 C 0.115 3.885 18 O -0.306 6.306 19 C -0.155 4.155 20 C -0.194 4.194 21 O -0.356 6.356 22 Si 0.692 3.308 23 C -0.097 4.097 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.181 0.819 28 H 0.256 0.744 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.251 0.749 32 H 0.236 0.764 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.232 0.768 38 H -0.193 1.193 39 H -0.234 1.234 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.718 1.783 7.538 13.223 hybrid contribution 1.029 0.528 -0.774 1.392 sum -9.689 2.311 6.764 12.040 Atomic orbital electron populations 1.20928 0.87868 1.04962 1.03608 1.20126 0.98162 0.91668 0.99366 1.21442 0.90730 1.00040 0.95451 1.20417 0.95210 0.92313 1.10507 1.18468 0.86938 0.84693 0.75781 1.90816 1.15394 1.88004 1.50734 1.45728 1.10746 1.04237 1.74450 1.22580 0.96533 0.81977 0.98477 0.91127 1.23280 1.01599 0.92454 0.98469 1.22271 0.94674 0.98122 1.00011 0.83151 1.20745 0.86743 0.77923 0.83966 1.43752 1.26953 1.51208 1.18052 1.90766 1.69658 1.63132 1.24158 1.23451 1.04574 0.91753 0.96011 1.18601 0.83473 0.90965 0.95429 1.84772 1.15551 1.96082 1.34172 1.20643 0.94672 0.94933 1.05226 1.25360 1.06028 1.00266 0.87794 1.86642 1.38042 1.93496 1.17422 0.94068 0.75410 0.72930 0.88353 1.21422 0.92133 0.99847 0.96331 0.90283 0.89852 0.89336 0.81938 0.74381 0.91815 0.84831 0.74869 0.76423 0.85155 0.91488 0.73951 0.86919 0.76826 1.19269 1.23426 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.26 10.00 71.24 0.71 1.97 16 2 C -0.09 0.49 5.87 -19.90 -0.12 0.37 16 3 C -0.06 0.23 9.18 22.52 0.21 0.44 16 4 C -0.18 -0.76 5.89 -20.01 -0.12 -0.87 16 5 C 0.55 4.61 7.76 86.70 0.67 5.29 16 6 O -0.57 -10.50 14.78 16.92 0.25 -10.25 16 7 N -0.70 -0.09 5.31 -443.20 -2.35 -2.45 16 8 C 0.11 0.27 3.86 45.52 0.18 0.44 16 9 H 0.07 0.93 7.42 -2.39 -0.02 0.91 16 10 C -0.12 0.31 7.20 31.12 0.22 0.54 16 11 C -0.13 0.62 4.35 -10.92 -0.05 0.57 16 12 H 0.15 -1.85 8.14 -2.39 -0.02 -1.87 16 13 C 0.52 1.62 7.36 87.66 0.65 2.27 16 14 N -0.84 3.58 8.87 -173.53 -1.54 2.04 16 15 O -0.60 -8.84 16.58 -3.05 -0.05 -8.89 16 16 C -0.12 0.54 7.48 31.21 0.23 0.77 16 17 C 0.16 1.12 6.69 22.85 0.15 1.27 16 18 O -0.49 -5.65 10.91 -68.77 -0.75 -6.40 16 19 C -0.15 -0.28 5.27 -19.80 -0.10 -0.38 16 20 C -0.09 -0.17 2.37 71.23 0.17 0.00 16 21 O -0.55 -4.02 12.88 -148.98 -1.92 -5.94 16 22 Si 0.79 -2.29 30.24 68.60 2.07 -0.21 16 23 C -0.08 0.25 8.30 22.30 0.19 0.44 16 24 H 0.08 -0.85 8.14 -2.39 -0.02 -0.86 16 25 H 0.08 -1.01 8.08 -2.39 -0.02 -1.03 16 26 H 0.09 -1.19 8.08 -2.39 -0.02 -1.21 16 27 H 0.16 -1.85 6.40 -2.91 -0.02 -1.86 16 28 H 0.42 -3.40 6.74 -92.70 -0.63 -4.03 16 29 H 0.06 0.26 7.43 -2.39 -0.02 0.24 16 30 H 0.13 -1.39 8.11 -2.38 -0.02 -1.41 16 31 H 0.42 -4.84 8.83 -92.71 -0.82 -5.66 16 32 H 0.40 -1.66 8.93 -92.71 -0.83 -2.49 16 33 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.07 -0.11 8.10 -2.39 -0.02 -0.13 16 35 H 0.40 1.77 9.06 -74.06 -0.67 1.10 16 36 H 0.11 0.17 7.83 -2.38 -0.02 0.15 16 37 H 0.38 0.36 8.70 -74.06 -0.64 -0.29 16 38 H -0.27 0.44 6.68 99.48 0.66 1.10 16 39 H -0.31 -1.71 7.11 99.48 0.71 -1.00 16 40 H 0.15 -1.10 4.83 -2.91 -0.01 -1.12 16 Total: 0.00 -36.10 337.94 -3.74 -39.84 By element: Atomic # 1 Polarization: -18.41 SS G_CDS: -2.44 Total: -20.85 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 2.99 Total: 13.11 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -3.89 Total: -0.40 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -2.47 Total: -31.48 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.07 Total: -0.21 kcal Total: -36.10 -3.74 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_13422088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.926 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds