Wall clock time and date at job start Thu Mar 4 2021 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21280 * 120.00096 * 2 1 4 4 C 1.50700 * 119.99729 * 179.97438 * 2 1 3 5 5 H 1.08996 * 112.90801 * 48.75364 * 4 2 1 6 6 C 1.53788 * 113.61361 * 180.02562 * 4 2 1 7 7 C 1.53787 * 87.07866 * 89.11909 * 6 4 2 8 8 H 1.09007 * 113.60991 * 270.79844 * 7 6 4 9 9 N 1.46497 * 113.61173 * 139.98114 * 7 6 4 10 10 C 1.34777 * 119.99525 * 154.99569 * 9 7 6 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72583 * 10 9 7 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 O 1.42902 * 109.47178 * 179.97438 * 13 12 10 15 15 C 1.35899 * 116.99732 * 180.02562 * 14 13 12 16 16 C 1.38729 * 120.05745 * 359.72465 * 15 14 13 17 17 C 1.38149 * 119.94520 * 179.74444 * 16 15 14 18 18 C 1.38261 * 120.05264 * 0.51283 * 17 16 15 19 19 C 1.50702 * 119.94759 * 179.74696 * 18 17 16 20 20 O 1.42903 * 109.47024 * 245.02153 * 19 18 17 21 21 Si 1.86303 * 109.46775 * 5.01427 * 19 18 17 22 22 C 1.38271 * 120.11308 * 359.76113 * 18 17 16 23 23 C 1.38145 * 120.05403 * 359.97438 * 22 18 17 24 24 C 1.53777 * 87.08211 * 25.43018 * 7 6 4 25 25 H 0.97001 * 120.00358 * 179.97438 * 1 2 3 26 26 H 0.97007 * 120.00020 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.61101 * 334.56871 * 6 4 2 28 28 H 1.08998 * 113.68985 * 203.68022 * 6 4 2 29 29 H 0.97000 * 120.00580 * 335.00315 * 9 7 6 30 30 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 31 31 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 32 32 H 1.09000 * 109.46887 * 300.00372 * 13 12 10 33 33 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 34 34 H 1.08000 * 120.03011 * 359.97438 * 16 15 14 35 35 H 1.07996 * 119.97441 * 180.23011 * 17 16 15 36 36 H 1.08996 * 109.47645 * 125.01898 * 19 18 17 37 37 H 0.96696 * 113.99795 * 59.99201 * 20 19 18 38 38 H 1.48504 * 110.00112 * 180.02562 * 21 19 18 39 39 H 1.48494 * 110.00419 * 301.32402 * 21 19 18 40 40 H 1.08002 * 119.96895 * 179.97438 * 22 18 17 41 41 H 1.07999 * 120.02545 * 179.97438 * 23 22 18 42 42 H 1.09004 * 113.61536 * 89.11640 * 24 7 6 43 43 H 1.08994 * 113.61762 * 220.01581 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1012 -1.3051 0.0006 5 1 1.7401 -2.0039 -0.7540 6 6 3.6295 -1.1341 0.0011 7 6 3.5484 -1.1190 1.5368 8 1 3.4006 -0.1239 1.9564 9 7 4.6336 -1.8560 2.1890 10 6 5.0022 -1.5401 3.4463 11 8 4.4351 -0.6460 4.0380 12 6 6.1143 -2.3023 4.1195 13 6 6.3270 -1.7532 5.5317 14 8 7.3812 -2.4764 6.1702 15 6 7.6986 -2.1114 7.4402 16 6 7.0134 -1.0747 8.0570 17 6 7.3344 -0.7090 9.3500 18 6 8.3447 -1.3683 10.0255 19 6 8.6967 -0.9637 11.4338 20 8 10.0242 -0.4353 11.4599 21 14 7.4994 0.3358 12.0241 22 6 9.0329 -2.3982 9.4109 23 6 8.7120 -2.7712 8.1200 24 6 2.2494 -1.9302 1.3978 25 1 -0.4851 -0.8400 -0.0004 26 1 -0.4850 0.8401 -0.0004 27 1 3.9633 -0.1893 -0.4278 28 1 4.1666 -1.9940 -0.3993 29 1 5.0870 -2.5713 1.7159 30 1 5.8488 -3.3580 4.1763 31 1 7.0328 -2.1892 3.5436 32 1 6.5924 -0.6976 5.4749 33 1 5.4085 -1.8663 6.1075 34 1 6.2272 -0.5564 7.5282 35 1 6.7988 0.0955 9.8319 36 1 8.6394 -1.8343 12.0871 37 1 10.1487 0.3430 10.8997 38 1 7.8361 0.7439 13.4117 39 1 7.5450 1.5154 11.1232 40 1 9.8220 -2.9113 9.9405 41 1 9.2502 -3.5753 7.6403 42 1 2.4079 -3.0085 1.3791 43 1 1.4692 -1.6282 2.0963 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_4549602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:20:48 Heat of formation + Delta-G solvation = -99.069614 kcal Electronic energy + Delta-G solvation = -25667.379479 eV Core-core repulsion = 21679.874632 eV Total energy + Delta-G solvation = -3987.504847 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79099 -41.32029 -40.50834 -39.22154 -38.36759 -37.30212 -34.81307 -34.44762 -33.24682 -32.03470 -31.43286 -27.51334 -26.73785 -26.38932 -25.37607 -23.61966 -22.71670 -22.20817 -21.51398 -20.29549 -19.51550 -18.47398 -18.22629 -18.05668 -17.74635 -17.49170 -17.23373 -16.97175 -16.43656 -16.15357 -16.06102 -15.84557 -15.64462 -15.53850 -14.87938 -14.75117 -14.45189 -14.38834 -14.29044 -14.05313 -13.53541 -13.48357 -13.30519 -13.08442 -12.87583 -12.78451 -12.29121 -12.07716 -11.84913 -11.79459 -11.66603 -11.59737 -11.07568 -10.97138 -10.70165 -10.60229 -10.11118 -10.04882 -9.23837 -4.94431 0.26841 0.29603 1.30691 1.49161 1.54557 1.57140 1.71073 1.92614 2.50557 2.54545 2.63832 3.39286 3.43312 3.43769 3.55054 3.70196 3.73541 3.81688 3.88025 3.89309 3.90706 4.01746 4.24726 4.28092 4.33446 4.43588 4.54439 4.57617 4.66966 4.68541 4.70107 4.78008 4.81206 4.86938 4.96725 5.00590 5.11168 5.17105 5.27906 5.48233 5.49925 5.71092 5.83985 6.30598 6.43084 6.47770 6.47922 7.17485 7.30704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.521 3.479 3 O -0.595 6.595 4 C -0.132 4.132 5 H 0.147 0.853 6 C -0.121 4.121 7 C 0.109 3.891 8 H 0.075 0.925 9 N -0.701 5.701 10 C 0.517 3.483 11 O -0.589 6.589 12 C -0.131 4.131 13 C 0.072 3.928 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.211 4.211 17 C -0.082 4.082 18 C -0.158 4.158 19 C -0.073 4.073 20 O -0.548 6.548 21 Si 0.759 3.241 22 C -0.058 4.058 23 C -0.157 4.157 24 C -0.121 4.121 25 H 0.419 0.581 26 H 0.405 0.595 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.423 0.577 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.385 0.615 38 H -0.301 1.301 39 H -0.287 1.287 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.129 0.871 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -8.606 -4.956 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.307 3.693 3 O -0.476 6.476 4 C -0.154 4.154 5 H 0.165 0.835 6 C -0.159 4.159 7 C 0.004 3.996 8 H 0.093 0.907 9 N -0.353 5.353 10 C 0.304 3.696 11 O -0.469 6.469 12 C -0.170 4.170 13 C -0.004 4.004 14 O -0.233 6.233 15 C 0.078 3.922 16 C -0.230 4.230 17 C -0.099 4.099 18 C -0.159 4.159 19 C -0.183 4.183 20 O -0.356 6.356 21 Si 0.665 3.335 22 C -0.076 4.076 23 C -0.176 4.176 24 C -0.160 4.160 25 H 0.251 0.749 26 H 0.236 0.764 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.261 0.739 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.234 0.766 38 H -0.230 1.230 39 H -0.214 1.214 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.147 0.853 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.220 -7.265 -3.992 9.302 hybrid contribution 0.483 0.879 -0.666 1.204 sum -3.738 -6.387 -4.658 8.744 Atomic orbital electron populations 1.43762 1.06366 1.13838 1.76031 1.20723 0.83513 0.91054 0.74031 1.90760 1.69460 1.35569 1.51823 1.22235 0.96658 0.94691 1.01774 0.83529 1.23275 0.94439 1.04368 0.93820 1.22552 0.87691 0.95967 0.93383 0.90725 1.45798 1.36943 1.38165 1.14418 1.20791 0.83724 0.82877 0.82176 1.90746 1.57245 1.33534 1.65381 1.21440 0.98863 1.02611 0.94081 1.22453 0.89127 0.95515 0.93258 1.85955 1.53397 1.58840 1.25133 1.19194 0.94892 0.94004 0.84099 1.21401 1.03970 1.00342 0.97289 1.21015 0.96224 0.98872 0.93836 1.20241 0.98936 0.99177 0.97513 1.25084 0.90312 1.06943 0.95937 1.86564 1.28584 1.49490 1.70993 0.94123 0.86292 0.77444 0.75639 1.21008 0.98025 0.95154 0.93393 1.20685 0.98672 1.02931 0.95277 1.23402 0.96735 1.02036 0.93779 0.74901 0.76409 0.91836 0.85081 0.73888 0.84893 0.85559 0.92165 0.91440 0.84554 0.84219 0.85464 0.76592 1.22957 1.21444 0.83983 0.83840 0.85298 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 4.50 8.87 -173.53 -1.54 2.96 16 2 C 0.52 0.93 7.36 87.66 0.64 1.58 16 3 O -0.60 -7.82 16.58 -3.03 -0.05 -7.87 16 4 C -0.13 0.78 4.34 -11.01 -0.05 0.74 16 5 H 0.15 -1.87 8.14 -2.39 -0.02 -1.89 16 6 C -0.12 0.51 7.21 31.12 0.22 0.73 16 7 C 0.11 -0.05 3.89 45.52 0.18 0.13 16 8 H 0.07 0.72 7.39 -2.38 -0.02 0.70 16 9 N -0.70 3.02 5.35 -440.03 -2.36 0.66 16 10 C 0.52 0.69 7.83 87.66 0.69 1.38 16 11 O -0.59 -6.95 15.58 -3.04 -0.05 -6.99 16 12 C -0.13 0.59 6.07 29.85 0.18 0.77 16 13 C 0.07 0.09 4.03 71.98 0.29 0.38 16 14 O -0.32 -1.07 10.14 -92.41 -0.94 -2.01 16 15 C 0.12 0.56 6.69 22.50 0.15 0.71 16 16 C -0.21 -0.79 9.04 22.37 0.20 -0.59 16 17 C -0.08 -0.17 8.66 22.25 0.19 0.02 16 18 C -0.16 -0.31 5.35 -19.85 -0.11 -0.41 16 19 C -0.07 -0.05 2.80 71.24 0.20 0.15 16 20 O -0.55 -2.07 12.83 -148.98 -1.91 -3.98 16 21 Si 0.76 0.01 29.88 68.60 2.05 2.06 16 22 C -0.06 -0.12 9.68 22.26 0.22 0.09 16 23 C -0.16 -0.46 9.99 22.37 0.22 -0.24 16 24 C -0.12 0.76 7.46 31.12 0.23 0.99 16 25 H 0.42 -5.21 8.83 -92.71 -0.82 -6.03 16 26 H 0.41 -2.12 8.93 -92.70 -0.83 -2.95 16 27 H 0.06 0.15 7.43 -2.39 -0.02 0.13 16 28 H 0.13 -1.48 8.12 -2.39 -0.02 -1.50 16 29 H 0.42 -5.14 8.73 -92.71 -0.81 -5.94 16 30 H 0.13 -1.24 8.14 -2.38 -0.02 -1.26 16 31 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H 0.06 0.21 7.61 -2.39 -0.02 0.19 16 33 H 0.07 0.15 7.63 -2.39 -0.02 0.14 16 34 H 0.14 0.35 6.30 -2.91 -0.02 0.33 16 35 H 0.14 -0.14 4.83 -2.91 -0.01 -0.15 16 36 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 37 H 0.38 -0.51 8.70 -74.06 -0.64 -1.15 16 38 H -0.30 -2.23 7.11 99.48 0.71 -1.53 16 39 H -0.29 -1.24 7.00 99.48 0.70 -0.54 16 40 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 41 H 0.14 0.02 8.06 -2.91 -0.02 -0.01 16 42 H 0.13 -1.53 8.14 -2.38 -0.02 -1.55 16 43 H 0.07 -0.24 8.09 -2.39 -0.02 -0.26 16 Total: 0.00 -29.98 362.98 -3.31 -33.29 By element: Atomic # 1 Polarization: -22.56 SS G_CDS: -1.98 Total: -24.54 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 3.47 Total: 6.42 kcal Atomic # 7 Polarization: 7.52 SS G_CDS: -3.90 Total: 3.63 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -2.95 Total: -20.86 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.05 Total: 2.06 kcal Total: -29.98 -3.31 -33.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_4549602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.779 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds