Wall clock time and date at job start Thu Mar 4 2021 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36551 * 126.64744 * 2 1 4 4 C 1.46660 * 125.98472 * 359.95864 * 3 2 1 5 5 O 1.21700 * 119.99926 * 359.71266 * 4 3 2 6 6 N 1.34774 * 119.99944 * 179.72232 * 4 3 2 7 7 C 1.46499 * 119.99884 * 180.02562 * 6 4 3 8 8 H 1.08998 * 112.85087 * 336.18504 * 7 6 4 9 9 C 1.53777 * 113.61486 * 107.49951 * 7 6 4 10 10 C 1.53785 * 87.08241 * 139.97730 * 9 7 6 11 11 H 1.09002 * 113.61570 * 220.01842 * 10 9 7 12 12 C 1.50701 * 113.69000 * 89.12299 * 10 9 7 13 13 N 1.34775 * 119.99783 * 80.93572 * 12 10 9 14 14 O 1.21281 * 120.00144 * 260.93299 * 12 10 9 15 15 C 1.53781 * 87.08241 * 334.56547 * 10 9 7 16 16 O 1.34907 * 108.02426 * 179.69534 * 3 2 1 17 17 C 1.33928 * 109.38595 * 0.26283 * 16 3 2 18 18 C 1.50699 * 125.61613 * 179.97438 * 17 16 3 19 19 O 1.42905 * 109.46838 * 270.02107 * 18 17 16 20 20 C 1.35899 * 116.99784 * 180.02562 * 19 18 17 21 21 C 1.38734 * 120.05909 * 359.72653 * 20 19 18 22 22 C 1.38145 * 119.94658 * 179.74510 * 21 20 19 23 23 C 1.38266 * 120.05197 * 0.50793 * 22 21 20 24 24 C 1.50702 * 119.94385 * 179.74680 * 23 22 21 25 25 O 1.42897 * 109.47262 * 245.02287 * 24 23 22 26 26 Si 1.86308 * 109.46949 * 5.02035 * 24 23 22 27 27 C 1.38258 * 120.11433 * 359.76711 * 23 22 21 28 28 C 1.38151 * 120.05813 * 359.97438 * 27 23 22 29 29 C 1.35132 * 108.76944 * 359.97438 * 17 16 3 30 30 H 1.08995 * 109.46896 * 90.00141 * 1 2 3 31 31 H 1.09000 * 109.47355 * 210.00582 * 1 2 3 32 32 H 1.09004 * 109.46963 * 330.00337 * 1 2 3 33 33 H 0.97004 * 120.00019 * 359.97438 * 6 4 3 34 34 H 1.08999 * 113.61947 * 25.43156 * 9 7 6 35 35 H 1.08997 * 113.61348 * 254.52371 * 9 7 6 36 36 H 0.97003 * 120.00033 * 0.02562 * 13 12 10 37 37 H 0.97009 * 119.99964 * 179.97438 * 13 12 10 38 38 H 1.09000 * 113.61578 * 139.97748 * 15 10 9 39 39 H 1.08997 * 113.61673 * 270.88717 * 15 10 9 40 40 H 1.08998 * 109.47217 * 30.01792 * 18 17 16 41 41 H 1.08999 * 109.47286 * 150.02484 * 18 17 16 42 42 H 1.08003 * 120.02687 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.97296 * 180.23068 * 22 21 20 44 44 H 1.08993 * 109.47527 * 125.01951 * 24 23 22 45 45 H 0.96702 * 113.99986 * 59.99503 * 25 24 23 46 46 H 1.48493 * 109.99688 * 58.68312 * 26 24 23 47 47 H 1.48501 * 109.99693 * 180.02562 * 26 24 23 48 48 H 1.08007 * 119.97619 * 179.97438 * 27 23 22 49 49 H 1.07996 * 120.03189 * 179.97438 * 28 27 23 50 50 H 1.07997 * 126.44373 * 179.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0956 0.0000 4 6 1.8843 2.4953 -0.0009 5 8 0.6967 2.7614 -0.0069 6 7 2.7971 3.4869 0.0049 7 6 2.3598 4.8851 0.0046 8 1 1.3584 5.0153 -0.4057 9 6 2.5737 5.5977 1.3504 10 6 3.0085 6.8298 0.5394 11 1 3.8576 7.3595 0.9714 12 6 1.8701 7.7475 0.1751 13 7 1.4037 8.6336 1.0772 14 8 1.3735 7.6888 -0.9299 15 6 3.3977 5.8550 -0.5845 16 8 3.6005 0.6648 0.0068 17 6 3.6183 -0.6744 0.0054 18 6 4.8550 -1.5356 0.0109 19 8 5.2532 -1.8058 -1.3347 20 6 6.3595 -2.5759 -1.5078 21 6 7.0509 -3.0568 -0.4054 22 6 8.1721 -3.8438 -0.5841 23 6 8.6114 -4.1436 -1.8603 24 6 9.8381 -4.9976 -2.0524 25 8 10.8661 -4.2223 -2.6723 26 14 10.4346 -5.6091 -0.3967 27 6 7.9275 -3.6608 -2.9607 28 6 6.8026 -2.8778 -2.7874 29 6 2.3448 -1.1262 -0.0019 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 3.7436 3.2747 0.0100 34 1 3.3741 5.1656 1.9510 35 1 1.6539 5.7492 1.9153 36 1 1.8011 8.6809 1.9608 37 1 0.6711 9.2247 0.8425 38 1 3.1431 6.2141 -1.5816 39 1 4.4234 5.4931 -0.5129 40 1 5.6589 -1.0136 0.5298 41 1 4.6417 -2.4743 0.5221 42 1 6.7107 -2.8192 0.5917 43 1 8.7085 -4.2216 0.2738 44 1 9.5925 -5.8490 -2.6871 45 1 11.1355 -3.4465 -2.1618 46 1 9.3633 -6.3902 0.2721 47 1 11.6444 -6.4521 -0.5724 48 1 8.2729 -3.8960 -3.9566 49 1 6.2689 -2.5006 -3.6471 50 1 2.0307 -2.1595 -0.0052 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:21:01 Heat of formation + Delta-G solvation = -74.415649 kcal Electronic energy + Delta-G solvation = -34173.694543 eV Core-core repulsion = 29328.360539 eV Total energy + Delta-G solvation = -4845.334003 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.161 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.95060 -41.75668 -41.27749 -40.40328 -39.20824 -38.41721 -37.16831 -35.47919 -34.76620 -34.40856 -33.14871 -32.04097 -31.50204 -29.00117 -28.58210 -26.79190 -26.72483 -26.14712 -24.17672 -23.30561 -22.72671 -22.31981 -22.21823 -21.00389 -20.29462 -19.45824 -19.21063 -18.32114 -18.25754 -18.04205 -17.54672 -17.38641 -17.23029 -16.89661 -16.62211 -16.30594 -16.02798 -15.99358 -15.74071 -15.53197 -15.47835 -15.24657 -14.74252 -14.60946 -14.37765 -14.31890 -14.22545 -14.14206 -13.82778 -13.70745 -13.59475 -13.49294 -13.43255 -13.34926 -13.09506 -12.80725 -12.24841 -12.05383 -12.02039 -11.89400 -11.73691 -11.71324 -11.32041 -11.00588 -10.82304 -10.69215 -10.39084 -10.32520 -10.02571 -9.72499 -9.22535 -4.98392 -0.28261 0.29008 0.32368 0.94965 1.33547 1.35029 1.54159 1.66063 1.91062 1.98878 2.00182 2.38108 2.53789 2.67173 3.28540 3.35579 3.39288 3.58264 3.61816 3.63933 3.71430 3.73357 3.83181 3.87190 3.96455 4.03992 4.09567 4.24885 4.28265 4.32699 4.43262 4.47055 4.49081 4.50950 4.59676 4.66353 4.68602 4.69724 4.77175 4.83543 4.92890 4.94792 4.99063 4.99999 5.07846 5.17208 5.27193 5.28525 5.39824 5.51916 5.66519 5.70891 5.85206 6.30315 6.31099 6.43867 6.81016 6.89937 7.31507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.097 4.097 3 C -0.093 4.093 4 C 0.601 3.399 5 O -0.550 6.550 6 N -0.694 5.694 7 C 0.108 3.892 8 H 0.084 0.916 9 C -0.120 4.120 10 C -0.128 4.128 11 H 0.149 0.851 12 C 0.523 3.477 13 N -0.836 5.836 14 O -0.594 6.594 15 C -0.122 4.122 16 O -0.157 6.157 17 C 0.013 3.987 18 C 0.136 3.864 19 O -0.328 6.328 20 C 0.125 3.875 21 C -0.200 4.200 22 C -0.075 4.075 23 C -0.161 4.161 24 C -0.072 4.072 25 O -0.559 6.559 26 Si 0.778 3.222 27 C -0.062 4.062 28 C -0.164 4.164 29 C -0.188 4.188 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.419 0.581 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.420 0.580 37 H 0.406 0.594 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.102 0.898 45 H 0.395 0.605 46 H -0.283 1.283 47 H -0.304 1.304 48 H 0.131 0.869 49 H 0.130 0.870 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 1.273 9.479 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.145 4.145 4 C 0.388 3.612 5 O -0.430 6.430 6 N -0.344 5.344 7 C 0.003 3.997 8 H 0.102 0.898 9 C -0.158 4.158 10 C -0.150 4.150 11 H 0.167 0.833 12 C 0.308 3.692 13 N -0.399 5.399 14 O -0.475 6.475 15 C -0.160 4.160 16 O -0.053 6.053 17 C -0.039 4.039 18 C 0.062 3.938 19 O -0.243 6.243 20 C 0.080 3.920 21 C -0.218 4.218 22 C -0.092 4.092 23 C -0.162 4.162 24 C -0.182 4.182 25 O -0.367 6.367 26 Si 0.685 3.315 27 C -0.081 4.081 28 C -0.182 4.182 29 C -0.207 4.207 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.180 0.820 43 H 0.170 0.830 44 H 0.120 0.880 45 H 0.245 0.755 46 H -0.210 1.210 47 H -0.233 1.233 48 H 0.149 0.851 49 H 0.148 0.852 50 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.404 0.485 8.662 10.221 hybrid contribution -0.577 0.036 -0.646 0.867 sum 4.827 0.521 8.015 9.371 Atomic orbital electron populations 1.20447 0.87672 1.03954 1.03109 1.20970 0.98354 0.91463 0.99173 1.21795 0.81819 0.94686 1.16171 1.16712 0.85686 0.82511 0.76315 1.90864 1.17195 1.82816 1.52135 1.45787 1.10061 1.05354 1.73224 1.22744 0.99559 0.78569 0.98781 0.89812 1.23404 1.03584 0.92982 0.95871 1.22208 0.97916 0.95089 0.99794 0.83309 1.20653 0.83839 0.80757 0.83959 1.43744 1.39388 1.39150 1.17617 1.90765 1.61146 1.71275 1.24282 1.23285 1.00246 0.93817 0.98665 1.83950 1.27805 1.22535 1.71016 1.22431 0.96945 0.80291 1.04230 1.21278 0.91661 0.98138 0.82730 1.86114 1.42295 1.66430 1.29415 1.19084 0.86486 0.91716 0.94669 1.21502 0.98391 1.02984 0.98951 1.21049 0.95748 0.96124 0.96306 1.20341 0.99280 1.02736 0.93849 1.25151 0.87156 0.96166 1.09730 1.86470 1.54814 1.43912 1.51478 0.93826 0.76789 0.84267 0.76641 1.20918 0.92914 0.94768 0.99453 1.20620 0.99068 1.03023 0.95532 1.21882 0.91009 1.01140 1.06689 0.90762 0.89126 0.91128 0.74360 0.85559 0.90794 0.74880 0.76334 0.91445 0.85458 0.87336 0.85300 0.81980 0.82983 0.88040 0.75516 1.21002 1.23275 0.85066 0.85249 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 9.81 71.24 0.70 0.27 16 2 C -0.10 -0.53 6.20 -19.74 -0.12 -0.65 16 3 C -0.09 -0.59 7.13 24.08 0.17 -0.42 16 4 C 0.60 4.97 7.79 86.44 0.67 5.64 16 5 O -0.55 -8.32 14.34 -4.35 -0.06 -8.39 16 6 N -0.69 -1.08 5.35 -444.00 -2.38 -3.46 16 7 C 0.11 0.22 3.91 45.52 0.18 0.40 16 8 H 0.08 0.89 7.46 -2.39 -0.02 0.87 16 9 C -0.12 0.57 7.46 31.12 0.23 0.81 16 10 C -0.13 0.63 4.34 -11.01 -0.05 0.58 16 11 H 0.15 -1.77 8.14 -2.39 -0.02 -1.79 16 12 C 0.52 1.16 7.35 87.66 0.64 1.81 16 13 N -0.84 4.32 8.87 -173.53 -1.54 2.78 16 14 O -0.59 -8.03 16.67 -3.03 -0.05 -8.08 16 15 C -0.12 0.25 7.21 31.12 0.22 0.48 16 16 O -0.16 -0.46 10.40 -4.93 -0.05 -0.51 16 17 C 0.01 0.00 6.94 24.97 0.17 0.17 16 18 C 0.14 -0.77 5.27 71.24 0.38 -0.39 16 19 O -0.33 -0.23 10.12 -92.41 -0.94 -1.16 16 20 C 0.13 -0.02 6.69 22.51 0.15 0.13 16 21 C -0.20 0.96 9.04 22.37 0.20 1.16 16 22 C -0.07 0.34 8.66 22.25 0.19 0.54 16 23 C -0.16 0.22 5.35 -19.85 -0.11 0.11 16 24 C -0.07 0.11 2.80 71.24 0.20 0.31 16 25 O -0.56 0.19 12.83 -148.98 -1.91 -1.72 16 26 Si 0.78 -2.99 29.80 68.60 2.04 -0.95 16 27 C -0.06 -0.05 9.68 22.25 0.22 0.16 16 28 C -0.16 -0.27 9.99 22.37 0.22 -0.05 16 29 C -0.19 -0.16 10.73 22.07 0.24 0.08 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 -0.02 8.14 -2.39 -0.02 -0.03 16 32 H 0.07 0.59 6.45 -2.38 -0.02 0.57 16 33 H 0.42 -1.63 8.48 -92.71 -0.79 -2.42 16 34 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 35 H 0.07 -0.23 8.10 -2.39 -0.02 -0.25 16 36 H 0.42 -5.13 8.83 -92.71 -0.82 -5.95 16 37 H 0.41 -2.08 8.93 -92.70 -0.83 -2.90 16 38 H 0.07 0.27 7.41 -2.39 -0.02 0.25 16 39 H 0.13 -1.06 8.12 -2.39 -0.02 -1.08 16 40 H 0.11 -1.08 7.65 -2.39 -0.02 -1.10 16 41 H 0.13 -1.44 7.67 -2.39 -0.02 -1.46 16 42 H 0.16 -1.82 6.30 -2.91 -0.02 -1.84 16 43 H 0.15 -1.47 4.90 -2.91 -0.01 -1.48 16 44 H 0.10 0.02 7.96 -2.39 -0.02 0.00 16 45 H 0.39 -3.40 8.70 -74.06 -0.64 -4.05 16 46 H -0.28 -0.11 7.11 99.48 0.71 0.59 16 47 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 48 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 49 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 50 H 0.18 -0.77 8.06 -2.91 -0.02 -0.80 16 Total: 0.00 -32.22 422.64 -2.36 -34.57 By element: Atomic # 1 Polarization: -22.24 SS G_CDS: -1.99 Total: -24.23 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 4.52 Total: 11.15 kcal Atomic # 7 Polarization: 3.24 SS G_CDS: -3.92 Total: -0.68 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -3.01 Total: -19.86 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.04 Total: -0.95 kcal Total: -32.22 -2.36 -34.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.842 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds